Strain Fitness in Sphingobium sp. HT1-2 around GFF43

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
32,502	+				+0.3
32,524	-		GFF41	0.19	+1.3
32,563	+		GFF41	0.37	-0.3
32,636	-		GFF41	0.70	+1.4
32,641	+		GFF41	0.72	+1.1
32,649	-		GFF41	0.76	+1.1
32,649	-		GFF41	0.76	+1.2
32,679	+		GFF41	0.89	+0.2
32,687	-				+0.2
32,687	-				+0.7
32,692	-				+0.9
32,718	+				+1.2
32,718	+				+0.4
32,727	+				-1.4
32,727	+				+2.0
32,737	+				+0.6
32,772	-				-0.4
32,778	+				-0.2
32,782	-				-0.5
32,786	-				+0.7
32,788	+				-1.0
32,788	+				-2.0
32,808	+				+0.2
32,816	-				-0.5
32,820	+				-1.3
32,820	+				+0.6
32,820	+				+0.4
32,820	+				-0.4
32,847	-		GFF42	0.11	+0.2
32,919	+		GFF42	0.22	-1.2
32,919	+		GFF42	0.22	+0.7
32,924	+		GFF42	0.23	+0.3
32,927	-		GFF42	0.23	-0.7
32,946	+		GFF42	0.26	-0.2
32,954	-		GFF42	0.27	+0.4
32,985	-		GFF42	0.32	+0.1
33,026	-		GFF42	0.38	-0.3
33,070	-		GFF42	0.45	-0.7
33,100	+		GFF42	0.50	+0.5
33,100	+		GFF42	0.50	-0.9
33,100	+		GFF42	0.50	-0.3
33,100	+		GFF42	0.50	+0.8
33,100	+		GFF42	0.50	-1.8
33,100	+		GFF42	0.50	+1.5
33,100	+		GFF42	0.50	+0.0
33,105	+		GFF42	0.50	+0.8
33,105	+		GFF42	0.50	-0.6
33,108	-		GFF42	0.51	+0.3
33,118	-		GFF42	0.52	+0.1
33,118	-		GFF42	0.52	-0.0
33,129	-		GFF42	0.54	+0.3
33,144	-		GFF42	0.56	-0.2
33,195	+		GFF42	0.64	-1.0
33,195	+		GFF42	0.64	+1.5
33,195	+		GFF42	0.64	+2.2
33,195	+		GFF42	0.64	+0.4
33,195	+		GFF42	0.64	+0.4
33,195	+		GFF42	0.64	+0.9
33,195	+		GFF42	0.64	+2.0
33,195	+		GFF42	0.64	-0.9
33,195	+		GFF42	0.64	-0.0
33,195	+		GFF42	0.64	+0.9
33,195	+		GFF42	0.64	+0.0
33,195	+		GFF42	0.64	-0.3
33,195	+		GFF42	0.64	+0.5
33,203	-		GFF42	0.65	-0.6
33,203	-		GFF42	0.65	-0.2
33,203	-		GFF42	0.65	-1.2
33,203	-		GFF42	0.65	+0.8
33,203	-		GFF42	0.65	-0.5
33,203	-		GFF42	0.65	-0.4
33,203	-		GFF42	0.65	+0.5
33,203	-		GFF42	0.65	-1.8
33,203	-		GFF42	0.65	+0.2
33,203	-		GFF42	0.65	-0.8
33,203	-		GFF42	0.65	+0.3
33,203	-		GFF42	0.65	-0.8
33,203	-		GFF42	0.65	+0.2
33,241	+		GFF42	0.71	+1.0
33,241	+		GFF42	0.71	-0.2
33,242	-		GFF42	0.71	+0.6
33,249	-		GFF42	0.72	+0.8
33,249	-		GFF42	0.72	+0.4
33,250	-		GFF42	0.72	+1.0
33,271	+		GFF42	0.76	+0.1
33,272	-		GFF42	0.76	-0.2
33,272	-		GFF42	0.76	-0.6
33,277	+		GFF42	0.77	-0.7
33,277	-		GFF42	0.77	+0.4
33,290	-		GFF42	0.79	+0.5
33,290	-		GFF42	0.79	-0.8
33,290	-		GFF42	0.79	+0.2
33,290	-		GFF42	0.79	-0.1
33,294	-		GFF42	0.79	-0.4
33,324	+		GFF42	0.84	+0.2
33,369	+				-0.3
33,377	-				-0.3
33,377	-				-0.4
33,387	+				-0.2
33,388	+				-1.5
33,395	-				-2.7
33,406	-				+0.0
33,414	-				+0.1
33,471	+				-0.3
33,476	+				+1.3
33,476	+				-1.4
33,476	+				+0.6
33,479	-				+0.8
33,484	-				+0.2
33,484	-				-0.1
33,484	-				-0.7
33,484	-				+0.3
33,484	-				+0.4
33,484	-				+0.2
33,484	-				+0.2
33,484	-				+0.5
33,484	-				-0.4
33,484	-				-0.3
33,486	+				-0.8
33,500	+				+0.9
33,500	+				-1.1
33,508	-		GFF43	0.10	-1.3
33,560	+		GFF43	0.19	-0.4
33,599	-		GFF43	0.25	+0.5
33,625	+		GFF43	0.29	-2.5
33,626	+		GFF43	0.29	+0.1
33,626	+		GFF43	0.29	-1.4
33,626	+		GFF43	0.29	-0.2
33,631	+		GFF43	0.30	+0.4
33,631	+		GFF43	0.30	+0.6
33,631	+		GFF43	0.30	-0.2
33,631	+		GFF43	0.30	+0.3
33,631	+		GFF43	0.30	-0.3
33,631	+		GFF43	0.30	+0.7
33,631	+		GFF43	0.30	-1.8
33,634	-		GFF43	0.30	+0.6
33,634	-		GFF43	0.30	+0.6
33,639	-		GFF43	0.31	-0.2
33,639	-		GFF43	0.31	+1.3
33,639	-		GFF43	0.31	-0.1
33,639	-		GFF43	0.31	+0.7
33,691	+		GFF43	0.40	+1.1
33,691	+		GFF43	0.40	+0.2
33,691	+		GFF43	0.40	-0.2
33,696	+		GFF43	0.40	+0.1
33,699	-		GFF43	0.41	+1.5
33,699	-		GFF43	0.41	+1.2
33,708	+		GFF43	0.42	-1.9
33,718	+		GFF43	0.44	-0.6
33,718	+		GFF43	0.44	-1.0
33,739	-		GFF43	0.47	-0.9
33,769	+		GFF43	0.52	+1.1
33,782	-		GFF43	0.54	+1.1
33,852	-		GFF43	0.65	+0.6
33,852	-		GFF43	0.65	+0.8
33,852	-		GFF43	0.65	+0.2
33,855	-		GFF43	0.66	+0.8
33,867	+		GFF43	0.68	-1.5
33,867	+		GFF43	0.68	-0.6
33,875	-		GFF43	0.69	+1.6
33,930	+		GFF43	0.78	-1.8
33,969	-		GFF43	0.84	-0.2
33,990	-		GFF43	0.87	+1.3
34,013	+				+0.8
34,015	+				+0.7
34,030	+				-1.7
34,030	+				+0.2
34,034	-				-1.0
34,059	+				-0.2
34,059	+				-0.8
34,059	+				-0.2
34,067	-				-0.1
34,072	-				+0.4
34,072	-				+0.6
34,072	-				+0.5
34,072	-				-0.1
34,072	-				+1.0
34,072	-				-0.6
34,072	-				-1.3
34,077	-				+0.6
34,079	-				+0.6
34,089	-				+2.0
34,096	-				+1.2
34,129	+				+1.4
34,129	+				+0.0
34,137	-				+1.2
34,138	+				+3.2
34,145	-				+1.4
34,166	-				-0.4
34,166	-				-0.5
34,171	-				-0.1
34,171	-				-0.3
34,176	-				-0.1
34,206	+				-1.0
34,210	-				-0.2
34,214	+				+0.3
34,217	-		GFF44	0.10	+1.0
34,217	-		GFF44	0.10	+1.2
34,217	-		GFF44	0.10	-0.7
34,227	-		GFF44	0.12	+1.3
34,263	+		GFF44	0.20	-0.7
34,271	-		GFF44	0.22	-0.2
34,312	+		GFF44	0.31	+0.4
34,323	+		GFF44	0.33	-0.2
34,364	-		GFF44	0.42	-0.6
34,366	-		GFF44	0.42	+1.5
34,366	-		GFF44	0.42	+0.2
34,377	-		GFF44	0.45	+1.3
34,384	-		GFF44	0.46	+0.1
34,442	+		GFF44	0.58	-0.3
34,442	+		GFF44	0.58	-0.0
34,442	+		GFF44	0.58	+0.2
34,442	+		GFF44	0.58	-0.3
34,442	+		GFF44	0.58	+1.3
34,450	-		GFF44	0.60	+0.3
34,450	-		GFF44	0.60	+0.8
34,450	-		GFF44	0.60	+0.4
34,455	-		GFF44	0.61	+1.0
34,464	+		GFF44	0.63	-0.9
34,464	+		GFF44	0.63	+0.8
34,511	+		GFF44	0.73	-1.3
34,511	+		GFF44	0.73	+0.4
34,519	-		GFF44	0.75	-0.0
34,525	+		GFF44	0.76	+0.2
34,546	-		GFF44	0.81	+1.5
34,670	-				+0.2
34,708	+				-0.6
34,708	+				+1.6
34,708	+				-2.6
34,708	+				-0.6
34,716	-				-1.0
34,716	-				+0.7
34,730	+				-0.2
34,738	-				-0.6
34,739	-				-0.5
34,775	-				-0.9
34,800	+				-1.5
34,800	+				-0.2
34,800	+				+0.8
34,808	-				+0.1
34,826	+				-0.0
34,834	-				-2.4
34,834	-				-1.0
34,834	-				+0.3
34,834	-				-1.0
34,846	-				-0.2
34,879	+		GFF45	0.12	-1.4
34,879	-		GFF45	0.12	+0.1
34,903	+		GFF45	0.13	+0.5
35,009	+		GFF45	0.20	-1.0
35,009	+		GFF45	0.20	-0.3
35,009	+		GFF45	0.20	+1.2
35,017	-		GFF45	0.21	-0.9
35,034	+		GFF45	0.22	+0.2
35,042	-		GFF45	0.22	+0.8
35,060	+		GFF45	0.24	+2.2
35,060	+		GFF45	0.24	-0.4
35,068	+		GFF45	0.24	+0.3
35,068	-		GFF45	0.24	-0.2
35,068	-		GFF45	0.24	-0.2
35,068	-		GFF45	0.24	-0.0
35,068	-		GFF45	0.24	+0.5