Strain Fitness in Sphingobium sp. HT1-2 around GFF4262

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,276,219	+				-0.8
4,276,281	+				-0.1
4,276,281	+				-1.3
4,276,290	+				-0.7
4,276,350	-				-2.1
4,276,353	+				+0.5
4,276,353	+				-1.6
4,276,353	+				+2.1
4,276,361	-				-1.6
4,276,361	-				+0.9
4,276,361	-				-1.0
4,276,368	+				-0.0
4,276,368	+				-0.7
4,276,387	+				+0.6
4,276,489	-				+0.2
4,276,503	-				+0.4
4,276,538	-		GFF4261	0.15	+0.4
4,276,539	-		GFF4261	0.16	+1.2
4,276,561	+		GFF4261	0.19	+0.3
4,276,569	-		GFF4261	0.21	+0.4
4,276,627	+		GFF4261	0.31	-0.1
4,276,775	+		GFF4261	0.57	-0.2
4,276,844	-		GFF4261	0.69	-0.1
4,276,862	-		GFF4261	0.72	+1.1
4,276,880	+		GFF4261	0.75	-0.5
4,276,936	+		GFF4261	0.85	+0.1
4,276,981	+				-0.3
4,276,993	+				-0.4
4,276,999	+				+0.2
4,277,034	-				+0.5
4,277,146	+				+1.6
4,277,146	+				+1.1
4,277,166	+				-0.0
4,277,187	-				+0.2
4,277,215	+				+0.9
4,277,294	+				+0.1
4,277,295	-				+1.0
4,277,329	+		GFF4262	0.11	+0.1
4,277,334	+		GFF4262	0.12	-0.1
4,277,334	+		GFF4262	0.12	+1.5
4,277,342	-		GFF4262	0.13	-0.5
4,277,342	-		GFF4262	0.13	+0.3
4,277,353	+		GFF4262	0.14	+0.5
4,277,368	-		GFF4262	0.15	+0.6
4,277,375	+		GFF4262	0.16	+1.2
4,277,383	-		GFF4262	0.17	+0.5
4,277,419	+		GFF4262	0.20	+0.2
4,277,420	+		GFF4262	0.20	-1.2
4,277,420	+		GFF4262	0.20	-1.1
4,277,428	+		GFF4262	0.21	+0.3
4,277,452	-		GFF4262	0.24	+1.2
4,277,454	+		GFF4262	0.24	+0.6
4,277,497	-		GFF4262	0.28	-0.2
4,277,498	-		GFF4262	0.28	+2.0
4,277,518	+		GFF4262	0.30	-1.1
4,277,544	+		GFF4262	0.33	-0.6
4,277,556	+		GFF4262	0.34	+0.9
4,277,564	+		GFF4262	0.35	+0.1
4,277,580	+		GFF4262	0.37	+0.2
4,277,580	+		GFF4262	0.37	-0.5
4,277,580	+		GFF4262	0.37	-0.1
4,277,580	+		GFF4262	0.37	-0.3
4,277,580	+		GFF4262	0.37	+1.0
4,277,580	+		GFF4262	0.37	-0.8
4,277,580	+		GFF4262	0.37	+0.9
4,277,580	+		GFF4262	0.37	-0.1
4,277,580	+		GFF4262	0.37	-1.4
4,277,588	-		GFF4262	0.37	-1.6
4,277,588	-		GFF4262	0.37	-0.4
4,277,588	-		GFF4262	0.37	+0.8
4,277,588	-		GFF4262	0.37	-2.4
4,277,588	-		GFF4262	0.37	-0.4
4,277,618	+		GFF4262	0.40	-0.8
4,277,624	+		GFF4262	0.41	-0.5
4,277,626	+		GFF4262	0.41	+0.7
4,277,626	+		GFF4262	0.41	-0.9
4,277,632	-		GFF4262	0.42	-0.6
4,277,634	-		GFF4262	0.42	-1.5
4,277,634	-		GFF4262	0.42	-0.5
4,277,640	-		GFF4262	0.43	+0.8
4,277,669	-		GFF4262	0.46	+0.7
4,277,677	+		GFF4262	0.46	-0.3
4,277,685	+		GFF4262	0.47	+0.9
4,277,693	-		GFF4262	0.48	+0.6
4,277,703	+		GFF4262	0.49	-0.7
4,277,703	+		GFF4262	0.49	-0.4
4,277,703	+		GFF4262	0.49	-0.0
4,277,703	-		GFF4262	0.49	+1.2
4,277,711	-		GFF4262	0.50	-0.7
4,277,711	-		GFF4262	0.50	+1.0
4,277,711	-		GFF4262	0.50	+0.3
4,277,711	-		GFF4262	0.50	-0.5
4,277,721	-		GFF4262	0.51	+0.7
4,277,723	+		GFF4262	0.51	-0.7
4,277,732	+		GFF4262	0.52	+0.7
4,277,732	+		GFF4262	0.52	-0.7
4,277,732	+		GFF4262	0.52	+0.4
4,277,732	+		GFF4262	0.52	-0.0
4,277,740	-		GFF4262	0.53	-1.3
4,277,740	-		GFF4262	0.53	+0.6
4,277,740	-		GFF4262	0.53	-1.2
4,277,740	-		GFF4262	0.53	-0.2
4,277,740	-		GFF4262	0.53	-0.6
4,277,742	-		GFF4262	0.53	+0.8
4,277,747	-		GFF4262	0.53	-0.6
4,277,757	+		GFF4262	0.54	-0.2
4,277,769	+		GFF4262	0.56	-0.4
4,277,800	+		GFF4262	0.59	+1.5
4,277,811	-		GFF4262	0.60	-0.9
4,277,816	-		GFF4262	0.60	+0.8
4,277,832	-		GFF4262	0.62	+1.5
4,277,851	-		GFF4262	0.64	+0.3
4,277,853	+		GFF4262	0.64	-1.7
4,277,858	+		GFF4262	0.65	-1.0
4,277,858	+		GFF4262	0.65	-0.1
4,277,866	-		GFF4262	0.65	+1.5
4,277,866	-		GFF4262	0.65	-0.2
4,277,876	-		GFF4262	0.66	-0.5
4,277,887	-		GFF4262	0.68	-0.4
4,277,887	-		GFF4262	0.68	+2.5
4,277,887	-		GFF4262	0.68	-0.6
4,277,896	-		GFF4262	0.68	-0.8
4,277,904	+		GFF4262	0.69	+0.3
4,277,934	+		GFF4262	0.72	+0.1
4,277,942	-		GFF4262	0.73	-1.3
4,277,945	-		GFF4262	0.73	-0.5
4,277,981	+		GFF4262	0.77	+0.7
4,277,989	-		GFF4262	0.78	-0.4
4,277,992	+		GFF4262	0.78	-0.1
4,278,005	-		GFF4262	0.79	-0.1
4,278,018	+		GFF4262	0.81	-1.0
4,278,028	-		GFF4262	0.82	+0.5
4,278,035	-		GFF4262	0.83	+1.0
4,278,053	+		GFF4262	0.84	-1.3
4,278,053	+		GFF4262	0.84	-0.9
4,278,053	+		GFF4262	0.84	+0.1
4,278,061	-		GFF4262	0.85	-1.6
4,278,061	-		GFF4262	0.85	+2.0
4,278,071	-		GFF4262	0.86	+0.0
4,278,076	+		GFF4262	0.87	+0.4
4,278,077	-		GFF4262	0.87	+0.2
4,278,079	+		GFF4262	0.87	+1.0
4,278,099	-		GFF4262	0.89	+0.1
4,278,099	-		GFF4262	0.89	+1.6
4,278,105	+		GFF4262	0.90	+0.5
4,278,109	+				+0.0
4,278,139	-				-0.4
4,278,139	-				-0.8
4,278,177	+				-0.3
4,278,185	-				+0.2
4,278,213	-				+1.7
4,278,223	-				-1.9
4,278,223	-				+0.3
4,278,232	-				-1.4
4,278,243	-				-1.9
4,278,301	+				+0.9
4,278,301	+				+0.7
4,278,306	+				+2.2
4,278,306	+				+2.2
4,278,306	+				-1.1
4,278,306	+				-0.8
4,278,314	-				-0.3
4,278,374	-				+0.7
4,278,383	+		GFF4263	0.10	+1.1
4,278,402	+		GFF4263	0.13	+0.4
4,278,407	+		GFF4263	0.14	-0.2
4,278,410	-		GFF4263	0.15	-0.4
4,278,411	+		GFF4263	0.15	-0.9
4,278,432	-		GFF4263	0.19	-1.3
4,278,432	-		GFF4263	0.19	+0.0
4,278,468	-		GFF4263	0.25	+0.6
4,278,495	+		GFF4263	0.30	+0.2
4,278,596	+		GFF4263	0.47	+0.1
4,278,607	+		GFF4263	0.49	+0.3
4,278,703	+		GFF4263	0.65	-0.2
4,278,711	-		GFF4263	0.67	+1.1
4,278,797	-		GFF4263	0.82	-0.4
4,278,803	-		GFF4263	0.83	-0.2
4,278,818	-		GFF4263	0.85	-0.9
4,278,818	-		GFF4263	0.85	+0.2
4,278,875	+				-0.1
4,278,888	+				+0.3
4,278,922	-				-0.9
4,279,033	-				+0.8
4,279,056	+				-0.7
4,279,061	+				+0.6
4,279,061	+				+1.2
4,279,061	+				-0.5
4,279,064	-				-0.5
4,279,069	-				+0.5
4,279,069	-				-1.4
4,279,069	-				-1.0
4,279,069	-				+0.5
4,279,070	+				-1.5
4,279,070	+				+0.8
4,279,070	+				+2.6
4,279,077	+				-1.1
4,279,077	+				-0.5
4,279,092	-				-0.4
4,279,109	+				-1.3
4,279,123	+				+0.2
4,279,124	-				+0.4
4,279,143	+				-0.9
4,279,143	+				+1.3
4,279,143	+				+0.2
4,279,145	+				+0.2
4,279,151	-				+0.9
4,279,151	-				-0.1
4,279,151	-				+0.3
4,279,151	-				+0.1
4,279,153	-				+0.2
4,279,153	-				-0.4
4,279,187	+		GFF4264	0.12	+0.3
4,279,190	-		GFF4264	0.12	-0.3
4,279,201	+		GFF4264	0.14	+0.8