Strain Fitness in Sphingobium sp. HT1-2 around GFF4234

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,250,316	-				-0.0
4,250,376	-		GFF4233	0.15	-1.0
4,250,399	-		GFF4233	0.17	-0.1
4,250,399	-		GFF4233	0.17	-0.7
4,250,443	+		GFF4233	0.21	-2.1
4,250,446	-		GFF4233	0.21	+1.0
4,250,448	+		GFF4233	0.21	-0.3
4,250,474	-		GFF4233	0.24	+2.1
4,250,492	-		GFF4233	0.25	-1.2
4,250,494	-		GFF4233	0.25	+1.5
4,250,494	-		GFF4233	0.25	+1.0
4,250,507	-		GFF4233	0.27	-1.7
4,250,517	-		GFF4233	0.28	-0.5
4,250,517	-		GFF4233	0.28	+0.4
4,250,519	+		GFF4233	0.28	-1.5
4,250,519	+		GFF4233	0.28	-1.3
4,250,519	+		GFF4233	0.28	+0.0
4,250,519	+		GFF4233	0.28	+0.4
4,250,519	+		GFF4233	0.28	+0.1
4,250,519	+		GFF4233	0.28	-1.0
4,250,527	-		GFF4233	0.28	+0.8
4,250,590	-		GFF4233	0.34	-0.4
4,250,632	+		GFF4233	0.38	-0.7
4,250,633	-		GFF4233	0.38	-1.0
4,250,675	+		GFF4233	0.42	+0.2
4,250,678	-		GFF4233	0.42	-0.3
4,250,697	-		GFF4233	0.44	-0.6
4,250,701	-		GFF4233	0.44	+0.4
4,250,721	-		GFF4233	0.46	-0.6
4,250,751	-		GFF4233	0.49	+0.8
4,250,771	-		GFF4233	0.50	+1.2
4,250,797	-		GFF4233	0.53	-0.5
4,250,809	+		GFF4233	0.54	-1.5
4,250,814	+		GFF4233	0.54	-1.7
4,250,822	+		GFF4233	0.55	-0.1
4,250,822	-		GFF4233	0.55	+0.8
4,250,822	-		GFF4233	0.55	+0.3
4,250,833	-		GFF4233	0.56	-1.6
4,250,843	+		GFF4233	0.57	-1.8
4,250,843	+		GFF4233	0.57	+2.0
4,250,851	-		GFF4233	0.58	-0.8
4,250,855	+		GFF4233	0.58	+0.4
4,250,871	+		GFF4233	0.59	-0.3
4,250,871	+		GFF4233	0.59	-1.7
4,250,871	+		GFF4233	0.59	+0.2
4,250,871	+		GFF4233	0.59	+0.0
4,250,879	-		GFF4233	0.60	-1.0
4,250,879	-		GFF4233	0.60	+0.5
4,250,879	-		GFF4233	0.60	-0.0
4,250,927	-		GFF4233	0.65	-2.0
4,250,929	+		GFF4233	0.65	+0.3
4,250,932	-		GFF4233	0.65	+0.2
4,250,934	+		GFF4233	0.65	-0.4
4,250,934	+		GFF4233	0.65	-0.2
4,250,937	-		GFF4233	0.65	-0.1
4,250,937	-		GFF4233	0.65	-1.8
4,250,937	-		GFF4233	0.65	-0.5
4,250,939	+		GFF4233	0.66	-0.8
4,250,939	+		GFF4233	0.66	-0.8
4,250,942	-		GFF4233	0.66	-1.9
4,250,942	-		GFF4233	0.66	-0.8
4,250,942	-		GFF4233	0.66	+0.3
4,250,942	-		GFF4233	0.66	-0.2
4,250,947	-		GFF4233	0.66	-0.9
4,250,947	-		GFF4233	0.66	-0.1
4,250,952	-		GFF4233	0.67	+1.0
4,250,974	+		GFF4233	0.69	-0.4
4,250,994	+		GFF4233	0.71	-0.3
4,250,994	+		GFF4233	0.71	+1.2
4,250,994	+		GFF4233	0.71	-0.3
4,250,994	+		GFF4233	0.71	-0.4
4,250,994	+		GFF4233	0.71	-0.1
4,250,994	+		GFF4233	0.71	-0.6
4,250,994	+		GFF4233	0.71	-1.1
4,250,994	+		GFF4233	0.71	-0.1
4,250,994	+		GFF4233	0.71	-1.2
4,250,994	+		GFF4233	0.71	+0.8
4,250,994	+		GFF4233	0.71	-0.6
4,251,002	-		GFF4233	0.71	+0.4
4,251,002	-		GFF4233	0.71	-3.3
4,251,002	-		GFF4233	0.71	-0.1
4,251,002	-		GFF4233	0.71	-0.2
4,251,002	-		GFF4233	0.71	+0.6
4,251,002	-		GFF4233	0.71	+0.4
4,251,002	-		GFF4233	0.71	-0.2
4,251,002	-		GFF4233	0.71	-0.2
4,251,002	-		GFF4233	0.71	-0.3
4,251,023	-		GFF4233	0.73	+0.4
4,251,089	-		GFF4233	0.79	-0.6
4,251,100	-		GFF4233	0.80	-1.2
4,251,106	-		GFF4233	0.81	-0.2
4,251,116	-		GFF4233	0.82	-0.1
4,251,116	-		GFF4233	0.82	-1.0
4,251,116	-		GFF4233	0.82	-2.1
4,251,126	+		GFF4233	0.82	-0.0
4,251,144	-		GFF4233	0.84	+0.6
4,251,144	-		GFF4233	0.84	-1.2
4,251,144	-		GFF4233	0.84	-0.6
4,251,159	+		GFF4233	0.85	-0.3
4,251,165	+		GFF4233	0.86	+0.5
4,251,197	+		GFF4233	0.89	-0.9
4,251,197	-		GFF4233	0.89	-1.5
4,251,217	-				+0.7
4,251,219	+				-2.4
4,251,227	-				+0.2
4,251,258	+				-1.1
4,251,266	-				+0.8
4,251,345	+				-1.2
4,251,412	-				-1.4
4,251,475	-				-1.5
4,251,477	-				-1.7
4,251,530	+				-0.0
4,251,535	+				-0.1
4,251,543	-				-1.2
4,251,543	-				-0.0
4,251,543	-				-1.2
4,251,543	-				-1.9
4,251,553	-				-1.7
4,251,553	-				+0.3
4,251,553	-				-0.0
4,251,553	-				-0.5
4,251,555	+				-1.4
4,251,667	-		GFF4234	0.11	+1.6
4,251,733	+		GFF4234	0.14	+0.4
4,251,738	+		GFF4234	0.14	-1.9
4,251,756	-		GFF4234	0.14	-0.8
4,251,756	-		GFF4234	0.14	-2.3
4,251,756	-		GFF4234	0.14	+0.6
4,251,778	-		GFF4234	0.15	-0.6
4,251,778	-		GFF4234	0.15	+0.3
4,251,782	-		GFF4234	0.15	+0.1
4,251,783	-		GFF4234	0.15	-1.8
4,251,837	+		GFF4234	0.17	-1.9
4,251,886	-		GFF4234	0.18	-1.5
4,251,886	-		GFF4234	0.18	+0.5
4,251,902	+		GFF4234	0.19	-2.5
4,251,904	+		GFF4234	0.19	-0.2
4,251,904	+		GFF4234	0.19	-2.6
4,251,910	-		GFF4234	0.19	+0.2
4,251,925	+		GFF4234	0.20	+0.1
4,251,933	-		GFF4234	0.20	-1.9
4,251,962	+		GFF4234	0.21	-0.6
4,251,962	+		GFF4234	0.21	-1.6
4,251,975	-		GFF4234	0.21	-0.4
4,252,011	-		GFF4234	0.22	+1.4
4,252,011	-		GFF4234	0.22	-1.6
4,252,034	+		GFF4234	0.23	-0.4
4,252,034	+		GFF4234	0.23	+0.2
4,252,039	+		GFF4234	0.23	-0.4
4,252,049	+		GFF4234	0.24	-0.4
4,252,080	+		GFF4234	0.25	-0.4
4,252,080	+		GFF4234	0.25	-1.4
4,252,080	+		GFF4234	0.25	-0.9
4,252,080	-		GFF4234	0.25	-0.6
4,252,088	-		GFF4234	0.25	+0.1
4,252,088	-		GFF4234	0.25	-2.1
4,252,088	-		GFF4234	0.25	-1.6
4,252,088	-		GFF4234	0.25	+0.9
4,252,125	-		GFF4234	0.26	+0.5
4,252,191	-		GFF4234	0.28	-1.6
4,252,194	+		GFF4234	0.28	-0.5
4,252,194	+		GFF4234	0.28	-0.5
4,252,194	+		GFF4234	0.28	-1.9
4,252,202	-		GFF4234	0.29	+1.9
4,252,204	+		GFF4234	0.29	-1.7
4,252,207	-		GFF4234	0.29	+1.0
4,252,218	+		GFF4234	0.29	+0.2
4,252,219	+		GFF4234	0.29	-2.8
4,252,226	-		GFF4234	0.29	-1.6
4,252,226	-		GFF4234	0.29	-0.3
4,252,335	+		GFF4234	0.33	-0.9
4,252,356	-		GFF4234	0.34	-1.8
4,252,356	-		GFF4234	0.34	-1.0
4,252,356	-		GFF4234	0.34	+0.1
4,252,363	+		GFF4234	0.34	-2.0
4,252,427	+		GFF4234	0.36	-3.4
4,252,489	-		GFF4234	0.38	-1.6
4,252,536	+		GFF4234	0.39	-0.8
4,252,615	-		GFF4234	0.42	-1.5
4,252,655	+		GFF4234	0.43	-1.6
4,252,678	-		GFF4234	0.44	+0.6
4,252,700	+		GFF4234	0.45	-1.0
4,252,705	+		GFF4234	0.45	-1.2
4,252,705	+		GFF4234	0.45	-1.5
4,252,708	-		GFF4234	0.45	+0.2
4,252,708	-		GFF4234	0.45	-1.2
4,252,708	-		GFF4234	0.45	-1.9
4,252,733	+		GFF4234	0.46	-1.5
4,252,777	+		GFF4234	0.47	+0.5
4,252,777	+		GFF4234	0.47	+0.0
4,252,777	+		GFF4234	0.47	-1.0
4,252,777	+		GFF4234	0.47	-0.2
4,252,780	-		GFF4234	0.47	+0.7
4,252,785	-		GFF4234	0.47	-0.0
4,252,785	-		GFF4234	0.47	-2.4
4,252,785	-		GFF4234	0.47	+0.5
4,252,788	+		GFF4234	0.47	-0.1
4,252,788	+		GFF4234	0.47	-1.6
4,252,802	+		GFF4234	0.48	-1.4
4,252,806	-		GFF4234	0.48	-2.3
4,252,806	-		GFF4234	0.48	-0.7
4,252,825	-		GFF4234	0.49	-0.2
4,252,827	+		GFF4234	0.49	-0.0
4,252,835	-		GFF4234	0.49	+0.6
4,252,835	-		GFF4234	0.49	-1.5
4,252,835	-		GFF4234	0.49	-1.8
4,252,860	-		GFF4234	0.50	-1.9
4,252,875	+		GFF4234	0.50	+0.2
4,252,875	+		GFF4234	0.50	-2.1
4,252,947	-		GFF4234	0.52	-0.1
4,252,961	+		GFF4234	0.53	+0.3
4,252,969	-		GFF4234	0.53	-0.5
4,252,969	-		GFF4234	0.53	-1.8
4,252,969	-		GFF4234	0.53	-2.6
4,252,969	-		GFF4234	0.53	+1.0
4,252,969	-		GFF4234	0.53	-1.2
4,252,969	-		GFF4234	0.53	+0.3
4,252,969	-		GFF4234	0.53	-0.4
4,253,069	+		GFF4234	0.56	-1.2
4,253,082	-		GFF4234	0.57	+0.2
4,253,082	-		GFF4234	0.57	-1.1
4,253,220	-		GFF4234	0.61	+0.8
4,253,226	+		GFF4234	0.61	-0.6
4,253,236	-		GFF4234	0.62	-0.7
4,253,253	+		GFF4234	0.62	-1.4
4,253,253	+		GFF4234	0.62	+1.6
4,253,261	-		GFF4234	0.63	-0.7
4,253,280	+		GFF4234	0.63	-0.4
4,253,292	-		GFF4234	0.64	+0.9
4,253,327	+		GFF4234	0.65	+0.6
4,253,341	+		GFF4234	0.65	+0.4
4,253,375	+		GFF4234	0.66	-0.4
4,253,380	+		GFF4234	0.66	+0.3
4,253,380	+		GFF4234	0.66	-1.3
4,253,385	+		GFF4234	0.67	-0.7
4,253,393	-		GFF4234	0.67	-0.0
4,253,419	+		GFF4234	0.68	-1.6
4,253,424	+		GFF4234	0.68	-1.2
4,253,429	+		GFF4234	0.68	-0.4
4,253,432	-		GFF4234	0.68	-0.3
4,253,434	+		GFF4234	0.68	-1.7
4,253,437	-		GFF4234	0.68	-1.4
4,253,445	-		GFF4234	0.68	-0.4
4,253,447	-		GFF4234	0.68	-1.2
4,253,447	-		GFF4234	0.68	+0.5
4,253,447	-		GFF4234	0.68	-1.8
4,253,462	-		GFF4234	0.69	-1.2
4,253,465	-		GFF4234	0.69	+0.7
4,253,468	+		GFF4234	0.69	-1.5
4,253,487	-		GFF4234	0.70	-1.1
4,253,510	+		GFF4234	0.71	-0.3
4,253,513	-		GFF4234	0.71	+0.4
4,253,518	-		GFF4234	0.71	-1.9
4,253,537	+		GFF4234	0.71	-1.9
4,253,550	+		GFF4234	0.72	-1.6
4,253,570	+		GFF4234	0.72	-1.9
4,253,575	+		GFF4234	0.73	+0.5
4,253,575	+		GFF4234	0.73	-2.2
4,253,575	+		GFF4234	0.73	-1.6
4,253,575	+		GFF4234	0.73	+0.1
4,253,580	+		GFF4234	0.73	-1.6
4,253,583	-		GFF4234	0.73	-0.4
4,253,583	-		GFF4234	0.73	-0.6
4,253,583	-		GFF4234	0.73	-1.6
4,253,583	-		GFF4234	0.73	-0.3
4,253,586	+		GFF4234	0.73	-1.1
4,253,602	+		GFF4234	0.73	-0.4
4,253,604	-		GFF4234	0.74	-1.9
4,253,611	-		GFF4234	0.74	-1.5
4,253,618	-		GFF4234	0.74	-1.5
4,253,620	+		GFF4234	0.74	-0.6
4,253,628	-		GFF4234	0.74	-2.4
4,253,628	-		GFF4234	0.74	-0.3
4,253,628	-		GFF4234	0.74	-0.3
4,253,628	-		GFF4234	0.74	-0.6
4,253,628	-		GFF4234	0.74	-0.0
4,253,655	-		GFF4234	0.75	-0.0
4,253,685	-		GFF4234	0.76	-1.4
4,253,685	-		GFF4234	0.76	-0.4
4,253,693	-		GFF4234	0.76	-2.1
4,253,719	+		GFF4234	0.77	-1.6
4,253,720	+		GFF4234	0.77	-0.4
4,253,720	+		GFF4234	0.77	-0.8
4,253,727	-		GFF4234	0.77	+1.2
4,253,728	-		GFF4234	0.78	-1.8
4,253,728	-		GFF4234	0.78	+0.1
4,253,728	-		GFF4234	0.78	+1.7
4,253,730	+		GFF4234	0.78	-0.5
4,253,730	+		GFF4234	0.78	-1.5
4,253,810	+		GFF4234	0.80	+0.2
4,253,810	+		GFF4234	0.80	-1.6
4,253,810	+		GFF4234	0.80	-0.8
4,253,810	+		GFF4234	0.80	-0.0
4,253,818	-		GFF4234	0.80	-1.8
4,253,818	-		GFF4234	0.80	-0.5
4,253,818	-		GFF4234	0.80	-0.4
4,253,818	-		GFF4234	0.80	+0.1
4,253,818	-		GFF4234	0.80	-1.4
4,253,818	-		GFF4234	0.80	-1.4
4,253,818	-		GFF4234	0.80	+0.3
4,253,818	-		GFF4234	0.80	-1.4
4,253,818	-		GFF4234	0.80	+0.9
4,253,818	-		GFF4234	0.80	-0.6
4,253,818	-		GFF4234	0.80	-1.9
4,253,831	-		GFF4234	0.81	-0.4
4,253,878	+		GFF4234	0.82	+0.5
4,253,881	-		GFF4234	0.82	+0.1
4,253,886	-		GFF4234	0.83	+0.2
4,253,989	+		GFF4234	0.86	-0.4
4,253,990	+		GFF4234	0.86	-0.9
4,253,991	-		GFF4234	0.86	+0.5
4,254,001	+		GFF4234	0.86	-0.7
4,254,009	-		GFF4234	0.87	-0.5
4,254,076	-		GFF4234	0.89	+1.0
4,254,130	+				-1.6
4,254,138	-				-1.6
4,254,151	+				-0.5
4,254,151	+				-2.5
4,254,159	-				+0.0
4,254,159	-				-2.0
4,254,159	-				-0.7
4,254,171	-				-0.6
4,254,172	+				-1.2
4,254,192	+				-2.0
4,254,278	+				-0.6
4,254,278	+				-1.4
4,254,296	-				-0.4
4,254,296	-				-1.4
4,254,296	-				-0.6
4,254,301	+				-0.4
4,254,301	+				-1.4
4,254,309	-				-0.5
4,254,309	-				-2.4
4,254,309	-				-1.5
4,254,309	-				-1.6
4,254,321	+				-0.8
4,254,324	-				+0.2
4,254,327	-				+1.0
4,254,356	+				-0.4
4,254,361	+				-0.3
4,254,364	-				-0.3
4,254,399	-				-0.7
4,254,406	-				+0.8
4,254,406	-				+1.4
4,254,429	+				-1.2
4,254,481	+				-1.4
4,254,495	-				+0.9
4,254,495	-				-0.8
4,254,495	-				-2.0
4,254,495	-				-1.6
4,254,495	-				-0.2
4,254,495	-				-1.6
4,254,504	+				-1.2
4,254,513	-				-0.0
4,254,520	+				-1.4
4,254,528	-				-1.0
4,254,548	-				-0.1
4,254,617	-		GFF4235	0.10	-1.7
4,254,632	+		GFF4235	0.11	-0.9
4,254,640	-		GFF4235	0.12	-2.0
4,254,667	-		GFF4235	0.13	-1.0
4,254,667	-		GFF4235	0.13	-0.2
4,254,667	-		GFF4235	0.13	-1.5
4,254,667	-		GFF4235	0.13	-1.6
4,254,669	-		GFF4235	0.13	-2.0
4,254,706	+		GFF4235	0.15	+0.5
4,254,726	+		GFF4235	0.17	+0.7
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4,254,750	+		GFF4235	0.18	-0.9
4,254,750	+		GFF4235	0.18	+0.1
4,254,750	+		GFF4235	0.18	-1.5
4,254,750	+		GFF4235	0.18	-2.8
4,254,750	+		GFF4235	0.18	+0.3
4,254,750	+		GFF4235	0.18	-0.6
4,254,750	+		GFF4235	0.18	+0.6
4,254,750	+		GFF4235	0.18	+0.6
4,254,750	+		GFF4235	0.18	-1.7
4,254,758	-		GFF4235	0.18	-1.5
4,254,758	-		GFF4235	0.18	-1.9
4,254,758	-		GFF4235	0.18	+1.0
4,254,758	-		GFF4235	0.18	-0.6
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4,254,770	+		GFF4235	0.19	-0.5
4,254,772	-		GFF4235	0.19	-0.8
4,254,814	+		GFF4235	0.21	-0.6
4,254,814	+		GFF4235	0.21	-0.4
4,254,822	-		GFF4235	0.22	+0.6
4,254,853	+		GFF4235	0.24	-1.0
4,254,853	+		GFF4235	0.24	-1.3
4,254,853	+		GFF4235	0.24	-0.0
4,254,861	-		GFF4235	0.24	+0.3
4,254,908	-		GFF4235	0.27	-0.8
4,254,954	-		GFF4235	0.29	-2.2
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4,254,992	+		GFF4235	0.31	-1.6
4,255,037	-		GFF4235	0.34	-0.6
4,255,070	+		GFF4235	0.36	+0.3
4,255,096	+		GFF4235	0.37	-1.9
4,255,099	-		GFF4235	0.37	-1.7
4,255,102	-		GFF4235	0.38	-0.1
4,255,111	-		GFF4235	0.38	-0.2
4,255,188	-		GFF4235	0.42	-0.7
4,255,188	-		GFF4235	0.42	-1.8
4,255,192	-		GFF4235	0.43	-0.5
4,255,192	-		GFF4235	0.43	-0.4
4,255,262	+		GFF4235	0.47	-1.6
4,255,275	+		GFF4235	0.47	+0.6
4,255,331	+		GFF4235	0.50	+0.2
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4,255,370	+		GFF4235	0.53	+0.3
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4,255,374	-		GFF4235	0.53	-1.8
4,255,382	+		GFF4235	0.53	-1.5