Strain Fitness in Sphingobium sp. HT1-2 around GFF4214

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,233,627	-				+0.2
4,233,663	-				-0.5
4,233,696	+				-0.8
4,233,705	+				-0.5
4,233,705	+				-0.7
4,233,713	-				-1.3
4,233,713	-				+0.2
4,233,713	-				-1.8
4,233,716	+				-0.5
4,233,724	-				-0.4
4,233,768	+		GFF4212	0.22	-1.3
4,233,768	+		GFF4212	0.22	-1.3
4,233,768	+		GFF4212	0.22	-0.1
4,233,776	-		GFF4212	0.28	-0.4
4,233,801	-		GFF4212	0.49	-0.6
4,233,816	+		GFF4212	0.62	-0.0
4,233,816	+		GFF4212	0.62	-0.9
4,233,816	+		GFF4212	0.62	+0.5
4,233,821	+		GFF4212	0.66	-1.0
4,233,824	-		GFF4212	0.68	-0.5
4,233,824	-		GFF4212	0.68	+0.2
4,233,826	+		GFF4212	0.70	+0.3
4,233,826	+		GFF4212	0.70	-0.0
4,233,829	-		GFF4212	0.72	+0.5
4,233,835	+		GFF4212	0.78	-0.6
4,233,842	+		GFF4212	0.83	-0.3
4,233,845	-		GFF4212	0.86	+0.6
4,233,850	-				-0.4
4,233,850	-				-0.7
4,233,850	-				-0.8
4,233,855	+				-0.5
4,233,859	-				+0.3
4,233,860	+				+1.3
4,233,860	+				-0.7
4,233,860	+				-1.3
4,233,860	+				+0.8
4,233,860	+				+0.5
4,233,860	+				-0.4
4,233,860	+				+0.7
4,233,860	+				+0.0
4,233,860	+				-0.1
4,233,863	-				+0.1
4,233,868	-				-0.2
4,233,868	-				-1.3
4,233,868	-				-0.2
4,233,868	-				-0.5
4,233,868	-				-0.2
4,233,881	+				-1.4
4,233,881	+				-1.3
4,233,881	+				-1.6
4,233,881	+				-0.5
4,233,881	+				-0.6
4,233,881	+				-0.3
4,233,881	+				+0.5
4,233,888	+				-0.6
4,233,889	-				+0.5
4,233,889	-				-0.1
4,233,889	-				-0.9
4,233,889	-				-0.6
4,233,889	-				-0.8
4,233,889	-				+0.3
4,233,889	-				-1.6
4,233,889	-				-1.3
4,233,889	-				-0.8
4,233,889	-				-0.5
4,233,889	-				-0.3
4,233,889	-				-1.7
4,233,904	-				+0.5
4,233,909	-				-1.7
4,233,909	-				+0.1
4,233,911	-				+0.2
4,233,911	-				-0.1
4,233,921	+				-0.5
4,233,929	-				-1.3
4,233,947	+				+2.1
4,233,961	-				-0.2
4,233,990	+				-0.1
4,233,995	+				-0.6
4,233,998	-				+0.8
4,234,003	-				-0.1
4,234,003	-				+0.8
4,234,003	-				+1.1
4,234,003	-				+0.7
4,234,024	+				+0.6
4,234,027	-				+0.8
4,234,075	+				-0.6
4,234,075	+				-0.3
4,234,083	-				-0.4
4,234,083	-				+0.1
4,234,093	+				-0.2
4,234,120	-				-1.0
4,234,129	-		GFF4213	0.12	+0.9
4,234,130	-		GFF4213	0.12	-0.0
4,234,131	+		GFF4213	0.12	-0.5
4,234,131	+		GFF4213	0.12	-1.8
4,234,131	+		GFF4213	0.12	-1.0
4,234,131	+		GFF4213	0.12	-0.5
4,234,131	+		GFF4213	0.12	+0.0
4,234,131	+		GFF4213	0.12	+0.7
4,234,131	+		GFF4213	0.12	-0.1
4,234,131	+		GFF4213	0.12	+0.2
4,234,131	+		GFF4213	0.12	-0.3
4,234,139	-		GFF4213	0.15	-2.5
4,234,139	-		GFF4213	0.15	+0.7
4,234,139	-		GFF4213	0.15	-1.0
4,234,139	-		GFF4213	0.15	-1.3
4,234,139	-		GFF4213	0.15	+0.0
4,234,180	-		GFF4213	0.25	-1.1
4,234,189	+		GFF4213	0.27	-1.1
4,234,189	+		GFF4213	0.27	+0.3
4,234,189	+		GFF4213	0.27	+0.4
4,234,189	+		GFF4213	0.27	+0.5
4,234,189	+		GFF4213	0.27	-0.8
4,234,189	+		GFF4213	0.27	-0.2
4,234,197	-		GFF4213	0.29	+1.0
4,234,197	-		GFF4213	0.29	+0.1
4,234,197	-		GFF4213	0.29	-2.3
4,234,197	-		GFF4213	0.29	-0.1
4,234,197	-		GFF4213	0.29	-0.0
4,234,197	-		GFF4213	0.29	-0.7
4,234,197	-		GFF4213	0.29	-0.9
4,234,202	-		GFF4213	0.31	+0.0
4,234,207	+		GFF4213	0.32	-1.4
4,234,214	+		GFF4213	0.34	-1.2
4,234,214	+		GFF4213	0.34	+0.0
4,234,214	+		GFF4213	0.34	+0.3
4,234,214	+		GFF4213	0.34	-2.0
4,234,214	+		GFF4213	0.34	-0.9
4,234,214	+		GFF4213	0.34	-0.6
4,234,214	+		GFF4213	0.34	+0.2
4,234,214	+		GFF4213	0.34	+0.5
4,234,222	-		GFF4213	0.36	-1.8
4,234,222	-		GFF4213	0.36	-1.7
4,234,222	-		GFF4213	0.36	-1.0
4,234,222	-		GFF4213	0.36	-1.1
4,234,222	-		GFF4213	0.36	+0.6
4,234,222	-		GFF4213	0.36	+0.5
4,234,222	-		GFF4213	0.36	+0.2
4,234,222	-		GFF4213	0.36	-0.3
4,234,244	+		GFF4213	0.41	+0.5
4,234,252	-		GFF4213	0.43	-0.5
4,234,252	-		GFF4213	0.43	-1.7
4,234,265	+		GFF4213	0.47	-0.5
4,234,275	+		GFF4213	0.49	+0.8
4,234,275	+		GFF4213	0.49	-2.5
4,234,283	-		GFF4213	0.51	-0.6
4,234,283	-		GFF4213	0.51	+0.1
4,234,283	-		GFF4213	0.51	+0.3
4,234,283	-		GFF4213	0.51	-1.0
4,234,283	-		GFF4213	0.51	-0.1
4,234,283	-		GFF4213	0.51	+0.4
4,234,283	-		GFF4213	0.51	-0.8
4,234,284	+		GFF4213	0.51	-0.3
4,234,284	+		GFF4213	0.51	-0.9
4,234,284	+		GFF4213	0.51	-1.6
4,234,299	+		GFF4213	0.55	+1.0
4,234,299	+		GFF4213	0.55	-0.4
4,234,299	+		GFF4213	0.55	+0.9
4,234,299	+		GFF4213	0.55	-0.8
4,234,299	+		GFF4213	0.55	+0.9
4,234,299	+		GFF4213	0.55	-0.0
4,234,299	+		GFF4213	0.55	-0.4
4,234,299	+		GFF4213	0.55	-0.5
4,234,299	+		GFF4213	0.55	+0.0
4,234,299	+		GFF4213	0.55	-1.0
4,234,299	+		GFF4213	0.55	-0.2
4,234,299	+		GFF4213	0.55	+0.4
4,234,299	+		GFF4213	0.55	-2.5
4,234,299	+		GFF4213	0.55	+0.1
4,234,299	+		GFF4213	0.55	-0.3
4,234,299	+		GFF4213	0.55	-2.0
4,234,299	+		GFF4213	0.55	+0.2
4,234,299	+		GFF4213	0.55	-0.6
4,234,299	+		GFF4213	0.55	-1.2
4,234,299	+		GFF4213	0.55	+0.7
4,234,307	-		GFF4213	0.57	+0.2
4,234,307	-		GFF4213	0.57	+0.4
4,234,307	-		GFF4213	0.57	-0.1
4,234,307	-		GFF4213	0.57	+0.1
4,234,307	-		GFF4213	0.57	+1.3
4,234,307	-		GFF4213	0.57	+0.3
4,234,307	-		GFF4213	0.57	-0.8
4,234,307	-		GFF4213	0.57	-0.1
4,234,307	-		GFF4213	0.57	-0.0
4,234,307	-		GFF4213	0.57	+0.1
4,234,307	-		GFF4213	0.57	-0.9
4,234,307	-		GFF4213	0.57	+0.4
4,234,307	-		GFF4213	0.57	+0.6
4,234,307	-		GFF4213	0.57	-0.2
4,234,307	-		GFF4213	0.57	+0.1
4,234,307	-		GFF4213	0.57	-2.7
4,234,307	-		GFF4213	0.57	+1.6
4,234,307	-		GFF4213	0.57	-0.1
4,234,307	-		GFF4213	0.57	-1.2
4,234,307	-		GFF4213	0.57	+0.8
4,234,307	-		GFF4213	0.57	-0.5
4,234,307	-		GFF4213	0.57	+0.1
4,234,307	-		GFF4213	0.57	-0.1
4,234,307	-		GFF4213	0.57	-1.8
4,234,344	+		GFF4213	0.67	-0.4
4,234,356	+		GFF4213	0.70	-0.7
4,234,356	+		GFF4213	0.70	+0.9
4,234,364	-		GFF4213	0.72	+0.2
4,234,364	-		GFF4213	0.72	-1.5
4,234,376	+		GFF4213	0.75	-0.2
4,234,376	-		GFF4213	0.75	-1.7
4,234,379	+		GFF4213	0.76	-1.1
4,234,379	-		GFF4213	0.76	-0.9
4,234,386	-		GFF4213	0.77	+1.0
4,234,386	-		GFF4213	0.77	-3.4
4,234,387	-		GFF4213	0.78	-0.1
4,234,389	+		GFF4213	0.78	+0.6
4,234,404	+		GFF4213	0.82	+1.7
4,234,409	+		GFF4213	0.83	+0.3
4,234,409	+		GFF4213	0.83	+1.0
4,234,409	+		GFF4213	0.83	-0.8
4,234,409	+		GFF4213	0.83	+0.7
4,234,417	-		GFF4213	0.85	-0.8
4,234,417	-		GFF4213	0.85	+0.5
4,234,417	-		GFF4213	0.85	-0.2
4,234,417	-		GFF4213	0.85	+0.3
4,234,417	-		GFF4213	0.85	-0.7
4,234,417	-		GFF4213	0.85	-0.3
4,234,451	+				-0.3
4,234,451	+				+0.2
4,234,451	+				+0.2
4,234,451	+				+0.8
4,234,451	+				+0.3
4,234,451	+				-0.7
4,234,451	+				-1.2
4,234,451	+				+1.2
4,234,451	+				-0.9
4,234,451	+				+0.3
4,234,451	+				-0.6
4,234,451	+				-1.7
4,234,459	-				-1.0
4,234,459	-				-2.0
4,234,459	-				-0.7
4,234,459	-				-0.1
4,234,465	-				-1.6
4,234,478	+				-0.5
4,234,486	-				-0.2
4,234,492	-				-0.6
4,234,509	-				-0.7
4,234,521	-				-0.9
4,234,521	-				+0.5
4,234,521	-				+0.5
4,234,524	+				-0.1
4,234,539	-				+0.8
4,234,539	-				-0.6
4,234,544	+				-2.6
4,234,578	-		GFF4214	0.18	+0.7
4,234,590	+		GFF4214	0.27	-0.6
4,234,593	-		GFF4214	0.29	-2.1
4,234,609	-		GFF4214	0.39	-1.7
4,234,618	-		GFF4214	0.46	-0.1
4,234,642	+		GFF4214	0.62	+0.3
4,234,643	+		GFF4214	0.63	-2.1
4,234,655	+		GFF4214	0.71	-1.1
4,234,675	-		GFF4214	0.84	+0.1
4,234,675	-		GFF4214	0.84	-1.8
4,234,680	-		GFF4214	0.88	+1.1
4,234,685	-				-0.9
4,234,702	+				+0.3
4,234,711	+				+1.3
4,234,716	+				+0.7
4,234,716	+				-1.7
4,234,716	+				-0.2
4,234,724	-				-1.8
4,234,724	-				-1.3
4,234,724	-				-1.7
4,234,756	+		GFF4215	0.24	-1.5
4,234,764	-		GFF4215	0.32	+0.1
4,234,774	+		GFF4215	0.41	+0.1
4,234,800	+		GFF4215	0.64	-1.1
4,234,800	+		GFF4215	0.64	-0.5
4,234,800	+		GFF4215	0.64	-0.2
4,234,800	+		GFF4215	0.64	-1.3
4,234,807	-		GFF4215	0.70	-0.7
4,234,807	-		GFF4215	0.70	-0.6
4,234,808	-		GFF4215	0.71	-0.1
4,234,808	-		GFF4215	0.71	+1.0
4,234,808	-		GFF4215	0.71	+0.5
4,234,830	+				+0.1
4,234,832	+				-1.8
4,234,832	-				+0.7
4,234,832	-				-0.9
4,234,834	+				+0.2
4,234,839	+				-0.5
4,234,841	-				-1.3
4,234,844	+				+0.1
4,234,855	+				+1.1
4,234,861	+				-0.1
4,234,861	+				-1.9
4,234,863	-				-0.0
4,234,871	+				-0.6
4,234,878	-				-0.2
4,234,879	-				-0.5
4,234,879	-				-2.1
4,234,881	-				-0.8
4,234,883	-				-0.1
4,234,888	-				-0.1
4,234,893	+				-0.4
4,234,896	-				+0.1
4,234,901	+				+0.2
4,234,903	-				+0.8
4,234,908	+				-0.1
4,234,908	+				-0.5
4,234,916	-				-1.6
4,234,928	+				+0.5
4,234,934	+				-0.6
4,234,936	-				+0.5
4,234,936	-				+0.2
4,234,936	-				+0.7
4,234,936	-				-0.3
4,234,936	-				-0.9
4,234,936	-				-0.2
4,234,992	+				-1.1
4,234,992	+				-1.3
4,234,992	+				-0.5
4,234,992	+				-0.8
4,235,000	-				-0.1
4,235,000	-				-0.3
4,235,000	-				-0.5
4,235,000	-				-2.4
4,235,000	-				+0.4
4,235,000	-				-0.5
4,235,000	-				+0.5
4,235,000	-				-1.1
4,235,002	+				+0.1
4,235,010	-				-0.5
4,235,030	-				-0.8
4,235,033	+				-1.9
4,235,041	-				-0.1
4,235,041	-				+0.2
4,235,084	+		GFF4216	0.10	+0.0
4,235,084	+		GFF4216	0.10	-1.8
4,235,084	+		GFF4216	0.10	+0.2
4,235,084	+		GFF4216	0.10	+0.0
4,235,084	+		GFF4216	0.10	+0.4
4,235,084	+		GFF4216	0.10	+0.7
4,235,084	+		GFF4216	0.10	+0.7
4,235,084	+		GFF4216	0.10	+0.2
4,235,084	+		GFF4216	0.10	+0.3
4,235,084	+		GFF4216	0.10	-0.8
4,235,090	+		GFF4216	0.13	+0.7
4,235,092	-		GFF4216	0.14	-1.6
4,235,092	-		GFF4216	0.14	+0.2
4,235,092	-		GFF4216	0.14	-1.0
4,235,092	-		GFF4216	0.14	+0.2
4,235,092	-		GFF4216	0.14	-1.4
4,235,098	+		GFF4216	0.17	+0.9
4,235,098	-		GFF4216	0.17	-0.5
4,235,098	-		GFF4216	0.17	+0.7
4,235,126	+		GFF4216	0.30	-0.7
4,235,145	-		GFF4216	0.39	-0.7
4,235,145	-		GFF4216	0.39	-0.2
4,235,169	-		GFF4216	0.50	+0.2
4,235,193	+		GFF4216	0.62	-0.1
4,235,233	-		GFF4216	0.81	+0.1
4,235,239	+		GFF4216	0.84	-0.1
4,235,266	+				+0.0
4,235,290	+				-0.5
4,235,290	+				+0.4
4,235,290	+				-1.1
4,235,298	-				+0.5
4,235,308	+				-1.6
4,235,308	-				+0.9
4,235,332	-		GFF4217	0.20	-1.2
4,235,333	+		GFF4217	0.21	+0.1
4,235,333	+		GFF4217	0.21	+1.3
4,235,333	+		GFF4217	0.21	-0.8
4,235,334	+		GFF4217	0.21	-0.5
4,235,341	-		GFF4217	0.25	-0.3
4,235,341	-		GFF4217	0.25	-0.9
4,235,341	-		GFF4217	0.25	-0.7
4,235,341	-		GFF4217	0.25	-0.9
4,235,342	-		GFF4217	0.25	+0.5
4,235,343	+		GFF4217	0.26	+0.5
4,235,355	-		GFF4217	0.32	-1.7
4,235,393	+		GFF4217	0.51	-2.2
4,235,545	+				-1.3
4,235,549	-				-0.0
4,235,551	+				+0.4
4,235,559	-				+0.2
4,235,559	-				-0.3
4,235,559	-				-0.9
4,235,559	-				-0.4
4,235,559	-				-2.1
4,235,574	+				-0.3
4,235,574	+				+0.5
4,235,582	-				-0.2
4,235,582	-				-0.1
4,235,582	-				-0.1
4,235,582	-				+0.7
4,235,582	-				-2.2
4,235,582	-				+0.1
4,235,582	-				+1.7
4,235,582	-				-1.9
4,235,600	-				-0.9
4,235,613	+				-1.1
4,235,621	-				+0.0
4,235,621	-				+0.0
4,235,649	+				-0.4
4,235,662	+		GFF4218	0.14	-0.7
4,235,670	-		GFF4218	0.21	-0.2
4,235,677	+		GFF4218	0.26	-2.4
4,235,682	+		GFF4218	0.30	+0.3
4,235,685	-		GFF4218	0.33	-1.3
4,235,691	+		GFF4218	0.37	-0.1