Strain Fitness in Sphingobium sp. HT1-2 around GFF4032

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,050,927	-		GFF4029	0.70	-0.5
4,050,932	-		GFF4029	0.70	-0.1
4,050,932	-		GFF4029	0.70	-1.2
4,050,944	-		GFF4029	0.71	-0.6
4,050,969	-		GFF4029	0.73	-0.1
4,050,984	+		GFF4029	0.74	+0.8
4,050,992	-		GFF4029	0.75	-0.0
4,050,992	-		GFF4029	0.75	-2.1
4,050,998	-		GFF4029	0.76	+0.0
4,051,014	+		GFF4029	0.77	+0.3
4,051,027	-		GFF4029	0.78	-0.4
4,051,037	+		GFF4029	0.79	+0.7
4,051,037	+		GFF4029	0.79	+0.6
4,051,043	-		GFF4029	0.79	-0.3
4,051,045	-		GFF4029	0.79	-0.0
4,051,045	-		GFF4029	0.79	+0.5
4,051,053	-		GFF4029	0.80	-0.7
4,051,068	-		GFF4029	0.81	-2.3
4,051,069	-		GFF4029	0.81	-0.5
4,051,071	+		GFF4029	0.81	-0.3
4,051,087	-		GFF4029	0.83	-0.8
4,051,108	+		GFF4029	0.84	-0.4
4,051,116	-		GFF4029	0.85	-1.5
4,051,164	+		GFF4029	0.89	+0.4
4,051,165	-		GFF4029	0.89	+0.9
4,051,169	+		GFF4029	0.89	+0.1
4,051,177	-		GFF4029	0.90	+0.5
4,051,178	+		GFF4029	0.90	+0.2
4,051,178	+		GFF4029	0.90	-0.9
4,051,195	+				+0.3
4,051,202	+				+0.3
4,051,215	+				+0.2
4,051,215	+				+0.2
4,051,215	+				-0.8
4,051,215	+				-0.4
4,051,215	-				-0.9
4,051,223	-				-2.2
4,051,233	+				+0.1
4,051,239	+				-1.8
4,051,269	-				-2.1
4,051,288	+				-0.9
4,051,288	+				-0.7
4,051,288	+				-1.1
4,051,293	+				+1.2
4,051,296	-				+0.5
4,051,296	-				-0.5
4,051,296	-				-2.2
4,051,301	+				+0.3
4,051,301	+				+0.6
4,051,301	+				+1.8
4,051,301	+				+1.5
4,051,301	+				+0.6
4,051,301	+				+0.6
4,051,301	+				+0.5
4,051,301	+				-1.5
4,051,301	-				-1.6
4,051,301	-				+1.3
4,051,301	-				-0.1
4,051,301	-				+0.1
4,051,301	-				-2.6
4,051,309	-				-1.5
4,051,309	-				-1.5
4,051,309	-				-0.4
4,051,341	+				-1.1
4,051,341	+				-0.4
4,051,342	-				+0.3
4,051,343	+				-1.1
4,051,343	+				+0.6
4,051,343	+				-1.2
4,051,351	-				-1.0
4,051,351	-				+0.1
4,051,351	-				-1.5
4,051,351	-				+0.2
4,051,373	+		GFF4030	0.12	-0.7
4,051,391	+		GFF4030	0.16	-1.4
4,051,407	-		GFF4030	0.20	+0.5
4,051,409	+		GFF4030	0.20	-0.8
4,051,411	-		GFF4030	0.21	+0.3
4,051,414	+		GFF4030	0.21	-0.2
4,051,414	+		GFF4030	0.21	-1.5
4,051,414	+		GFF4030	0.21	+0.6
4,051,417	-		GFF4030	0.22	-0.7
4,051,417	-		GFF4030	0.22	-0.9
4,051,417	-		GFF4030	0.22	+0.0
4,051,417	-		GFF4030	0.22	-1.0
4,051,422	-		GFF4030	0.23	-0.1
4,051,422	-		GFF4030	0.23	-2.4
4,051,422	-		GFF4030	0.23	+0.4
4,051,428	+		GFF4030	0.24	+0.4
4,051,428	+		GFF4030	0.24	+0.3
4,051,433	-		GFF4030	0.25	+0.7
4,051,436	-		GFF4030	0.26	+0.3
4,051,436	-		GFF4030	0.26	-0.4
4,051,436	-		GFF4030	0.26	+1.6
4,051,445	+		GFF4030	0.28	-2.6
4,051,445	+		GFF4030	0.28	+0.0
4,051,453	-		GFF4030	0.30	+1.3
4,051,483	+		GFF4030	0.36	-0.2
4,051,491	-		GFF4030	0.38	+0.1
4,051,498	-		GFF4030	0.40	-1.2
4,051,500	+		GFF4030	0.40	-0.3
4,051,500	+		GFF4030	0.40	-0.7
4,051,501	-		GFF4030	0.40	+0.0
4,051,505	+		GFF4030	0.41	-0.3
4,051,505	+		GFF4030	0.41	-0.0
4,051,507	+		GFF4030	0.42	-0.4
4,051,507	+		GFF4030	0.42	-0.0
4,051,508	-		GFF4030	0.42	+0.6
4,051,508	-		GFF4030	0.42	-1.4
4,051,508	-		GFF4030	0.42	-0.5
4,051,508	-		GFF4030	0.42	-0.7
4,051,510	+		GFF4030	0.42	+0.2
4,051,512	+		GFF4030	0.43	+0.4
4,051,513	-		GFF4030	0.43	-1.7
4,051,513	-		GFF4030	0.43	+0.1
4,051,518	-		GFF4030	0.44	-0.2
4,051,518	-		GFF4030	0.44	-2.1
4,051,520	-		GFF4030	0.45	-0.8
4,051,520	-		GFF4030	0.45	-0.4
4,051,527	+		GFF4030	0.46	+0.6
4,051,530	-		GFF4030	0.47	-1.9
4,051,530	-		GFF4030	0.47	-1.6
4,051,530	-		GFF4030	0.47	-1.0
4,051,532	+		GFF4030	0.47	+1.1
4,051,532	+		GFF4030	0.47	-0.5
4,051,535	-		GFF4030	0.48	-1.2
4,051,535	-		GFF4030	0.48	+1.0
4,051,540	-		GFF4030	0.49	+0.5
4,051,540	-		GFF4030	0.49	-0.4
4,051,540	-		GFF4030	0.49	+1.0
4,051,547	+		GFF4030	0.51	-1.2
4,051,558	-		GFF4030	0.53	-1.6
4,051,568	+		GFF4030	0.55	-1.6
4,051,597	-		GFF4030	0.62	+0.6
4,051,606	+		GFF4030	0.64	+0.4
4,051,610	+		GFF4030	0.64	-1.6
4,051,626	+		GFF4030	0.68	-0.7
4,051,694	+		GFF4030	0.83	-0.4
4,051,695	+		GFF4030	0.83	+0.9
4,051,696	-		GFF4030	0.83	+0.2
4,051,719	+		GFF4030	0.89	-0.2
4,051,727	-				-0.6
4,051,727	-				-0.3
4,051,728	+				+0.6
4,051,736	-				-0.6
4,051,752	+				+0.0
4,051,752	+				-0.4
4,051,752	+				+1.5
4,051,752	+				+1.5
4,051,752	+				-0.2
4,051,756	-				+1.1
4,051,757	+				+0.3
4,051,760	-				-2.0
4,051,760	-				-0.9
4,051,764	+				-0.6
4,051,772	-				-0.0
4,051,808	+		GFF4031	0.30	-0.1
4,051,814	+		GFF4031	0.34	-2.1
4,051,816	-		GFF4031	0.36	+0.2
4,051,821	-		GFF4031	0.39	-0.2
4,051,822	+		GFF4031	0.40	-0.7
4,051,825	+		GFF4031	0.42	-0.9
4,051,830	-		GFF4031	0.46	-0.2
4,051,833	-		GFF4031	0.48	+1.3
4,051,840	-		GFF4031	0.53	-1.0
4,051,846	+		GFF4031	0.57	-1.4
4,051,846	+		GFF4031	0.57	+0.9
4,051,852	+		GFF4031	0.62	-1.2
4,051,852	+		GFF4031	0.62	-0.3
4,051,852	+		GFF4031	0.62	-1.5
4,051,852	+		GFF4031	0.62	+0.5
4,051,854	-		GFF4031	0.63	+0.3
4,051,860	-		GFF4031	0.67	-1.1
4,051,860	-		GFF4031	0.67	+0.8
4,051,860	-		GFF4031	0.67	-3.1
4,051,872	+		GFF4031	0.76	+1.4
4,051,872	+		GFF4031	0.76	-1.1
4,051,872	+		GFF4031	0.76	-1.0
4,051,872	-		GFF4031	0.76	-1.2
4,051,873	-		GFF4031	0.77	-0.0
4,051,877	+		GFF4031	0.80	-0.1
4,051,877	+		GFF4031	0.80	+1.1
4,051,880	-		GFF4031	0.82	-2.2
4,051,880	-		GFF4031	0.82	-0.5
4,051,898	+				-0.1
4,051,937	+		GFF4032	0.21	+0.3
4,051,937	+		GFF4032	0.21	-1.2
4,051,940	-		GFF4032	0.23	-1.2
4,051,942	+		GFF4032	0.24	-0.0
4,051,943	+		GFF4032	0.25	+0.2
4,051,943	+		GFF4032	0.25	-0.9
4,051,951	-		GFF4032	0.30	+0.1
4,051,955	-		GFF4032	0.33	-0.2
4,051,974	+		GFF4032	0.45	-0.2
4,051,974	+		GFF4032	0.45	+0.3
4,051,974	+		GFF4032	0.45	-1.4
4,051,982	-		GFF4032	0.50	-1.0
4,052,010	-		GFF4032	0.68	-0.1
4,052,021	+		GFF4032	0.75	-0.8
4,052,021	-		GFF4032	0.75	-0.4
4,052,023	+		GFF4032	0.76	+1.6
4,052,023	+		GFF4032	0.76	+0.1
4,052,023	+		GFF4032	0.76	+0.5
4,052,023	+		GFF4032	0.76	+0.0
4,052,029	-		GFF4032	0.80	-0.0
4,052,031	-		GFF4032	0.81	-2.1
4,052,031	-		GFF4032	0.81	-0.9
4,052,031	-		GFF4032	0.81	-2.1
4,052,031	-		GFF4032	0.81	-0.0
4,052,037	+		GFF4032	0.85	+0.1
4,052,046	-				+1.5
4,052,054	-				-0.9
4,052,083	+		GFF4033	0.23	-0.4
4,052,089	-		GFF4033	0.28	+0.5
4,052,091	+		GFF4033	0.29	-0.7
4,052,091	+		GFF4033	0.29	+0.9
4,052,099	-		GFF4033	0.36	-1.6
4,052,099	-		GFF4033	0.36	+0.6
4,052,106	+		GFF4033	0.42	-1.0
4,052,106	+		GFF4033	0.42	-1.1
4,052,106	+		GFF4033	0.42	-0.7
4,052,114	-		GFF4033	0.48	+0.4
4,052,114	-		GFF4033	0.48	+1.7
4,052,114	-		GFF4033	0.48	-2.5
4,052,144	-		GFF4033	0.73	-1.4
4,052,157	+		GFF4033	0.84	+0.1
4,052,164	+				+0.8
4,052,164	+				+0.2
4,052,164	+				-0.1
4,052,164	+				-0.3
4,052,165	-				-0.6
4,052,165	-				-0.3
4,052,165	-				-1.6
4,052,165	-				+1.9
4,052,167	-				+1.2
4,052,169	+				+0.6
4,052,169	+				+0.7
4,052,169	+				-0.3
4,052,172	-				+0.6
4,052,172	-				-0.4
4,052,172	-				+0.8
4,052,172	-				-0.9
4,052,177	-				-1.4
4,052,177	-				-1.8
4,052,177	-				-1.2
4,052,184	+				-0.9
4,052,203	-				-0.8
4,052,208	-				+1.0
4,052,208	-				-0.3
4,052,220	-				+0.3
4,052,237	-				-3.2
4,052,266	+				-0.7
4,052,274	-				+0.1
4,052,305	-				-1.1
4,052,308	+				+0.0
4,052,312	+				-0.3
4,052,330	+				+0.1
4,052,340	+				+0.1
4,052,345	+				+0.7
4,052,353	-				+0.9
4,052,353	-				-1.1
4,052,368	+				+0.1
4,052,375	+				-0.6
4,052,421	-				+0.2
4,052,421	-				-1.2
4,052,431	-				-0.4
4,052,437	+				-1.6
4,052,437	+				-0.7
4,052,445	-				-1.3
4,052,450	+				-0.4
4,052,485	+				+0.3
4,052,485	+				-0.8
4,052,524	+		GFF4034	0.16	+0.6
4,052,535	-		GFF4034	0.18	-1.8
4,052,539	+		GFF4034	0.18	-0.6
4,052,549	-		GFF4034	0.20	-0.9
4,052,561	+		GFF4034	0.22	+0.2
4,052,593	+		GFF4034	0.27	+0.8
4,052,600	+		GFF4034	0.28	-2.3
4,052,600	+		GFF4034	0.28	+0.3
4,052,600	+		GFF4034	0.28	+1.0
4,052,600	+		GFF4034	0.28	+1.0
4,052,600	+		GFF4034	0.28	-0.3
4,052,600	+		GFF4034	0.28	+0.1
4,052,600	+		GFF4034	0.28	-1.1
4,052,600	+		GFF4034	0.28	-0.1
4,052,600	+		GFF4034	0.28	-1.0
4,052,608	-		GFF4034	0.29	+0.8
4,052,608	-		GFF4034	0.29	-0.1
4,052,608	-		GFF4034	0.29	+1.0
4,052,608	-		GFF4034	0.29	-0.9
4,052,608	-		GFF4034	0.29	+0.5
4,052,608	-		GFF4034	0.29	-0.4
4,052,611	-		GFF4034	0.29	-0.2
4,052,616	-		GFF4034	0.30	-0.9
4,052,628	+		GFF4034	0.32	-1.4
4,052,635	-		GFF4034	0.33	-0.9
4,052,636	-		GFF4034	0.33	+1.1
4,052,656	+		GFF4034	0.36	-0.4
4,052,664	-		GFF4034	0.38	-0.4
4,052,679	+		GFF4034	0.40	+0.2
4,052,682	-		GFF4034	0.40	+0.6
4,052,706	+		GFF4034	0.44	+0.1
4,052,706	+		GFF4034	0.44	+0.0
4,052,711	+		GFF4034	0.45	+0.1
4,052,714	-		GFF4034	0.45	+0.4
4,052,738	+		GFF4034	0.49	-0.0
4,052,767	+		GFF4034	0.53	-1.6
4,052,774	-		GFF4034	0.55	+0.1
4,052,774	-		GFF4034	0.55	+0.3
4,052,784	+		GFF4034	0.56	+0.1
4,052,804	+		GFF4034	0.59	-1.0
4,052,804	+		GFF4034	0.59	-1.4
4,052,812	-		GFF4034	0.60	-1.1
4,052,812	-		GFF4034	0.60	+1.5
4,052,812	-		GFF4034	0.60	-0.7
4,052,814	-		GFF4034	0.61	-0.2
4,052,814	-		GFF4034	0.61	-1.0
4,052,820	+		GFF4034	0.62	-0.5
4,052,828	-		GFF4034	0.63	-0.4
4,052,925	+		GFF4034	0.78	-3.0
4,052,925	+		GFF4034	0.78	-0.6
4,052,925	+		GFF4034	0.78	-1.2
4,052,933	-		GFF4034	0.79	-0.2
4,052,933	-		GFF4034	0.79	+0.1
4,052,933	-		GFF4034	0.79	-0.3
4,052,960	+		GFF4034	0.83	-0.7
4,052,971	+		GFF4034	0.85	-0.4
4,052,979	-		GFF4034	0.86	+1.0
4,052,990	-		GFF4034	0.88	-1.8
4,052,998	-		GFF4034	0.89	-1.9
4,053,011	+				-0.2
4,053,012	+				-0.2
4,053,014	-				+0.7
4,053,040	+				+0.6
4,053,046	-				-0.7
4,053,048	-				-2.9