Strain Fitness in Sphingobium sp. HT1-2 around GFF3955

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,995,278	+				-1.3
3,995,278	+				+1.4
3,995,281	-				+0.5
3,995,286	-				-0.1
3,995,302	+				-0.9
3,995,305	-				-0.8
3,995,308	+				+1.3
3,995,315	+				+1.0
3,995,321	-				-0.5
3,995,328	+				-0.1
3,995,333	+				-0.5
3,995,335	-				-1.7
3,995,335	-				+0.7
3,995,336	-				+1.0
3,995,340	-				-1.0
3,995,341	-				+1.1
3,995,370	+				-0.0
3,995,409	-		GFF3954	0.12	-1.3
3,995,440	-		GFF3954	0.15	+0.9
3,995,442	+		GFF3954	0.16	-2.1
3,995,448	+		GFF3954	0.16	-1.0
3,995,449	-		GFF3954	0.16	-1.6
3,995,513	+		GFF3954	0.23	-0.8
3,995,555	-		GFF3954	0.27	-0.6
3,995,561	+		GFF3954	0.28	+0.0
3,995,568	-		GFF3954	0.28	-0.1
3,995,576	+		GFF3954	0.29	-0.7
3,995,586	+		GFF3954	0.30	+0.1
3,995,591	+		GFF3954	0.31	-0.3
3,995,595	-		GFF3954	0.31	-0.9
3,995,599	-		GFF3954	0.31	+2.0
3,995,599	-		GFF3954	0.31	-1.3
3,995,604	-		GFF3954	0.32	+0.3
3,995,629	+		GFF3954	0.34	-0.2
3,995,631	+		GFF3954	0.35	-1.2
3,995,675	+		GFF3954	0.39	+1.7
3,995,680	+		GFF3954	0.40	+0.4
3,995,683	-		GFF3954	0.40	-1.3
3,995,689	+		GFF3954	0.40	-0.3
3,995,709	+		GFF3954	0.42	-2.6
3,995,714	-		GFF3954	0.43	-0.7
3,995,719	-		GFF3954	0.43	+0.6
3,995,733	-		GFF3954	0.45	-0.1
3,995,733	-		GFF3954	0.45	-0.7
3,995,743	-		GFF3954	0.46	-0.3
3,995,768	+		GFF3954	0.48	-1.2
3,995,776	-		GFF3954	0.49	+0.3
3,995,778	+		GFF3954	0.49	+1.6
3,995,778	+		GFF3954	0.49	-0.4
3,995,786	-		GFF3954	0.50	+1.0
3,995,786	-		GFF3954	0.50	+0.4
3,995,823	+		GFF3954	0.54	-0.1
3,995,854	-		GFF3954	0.57	+0.5
3,995,859	-		GFF3954	0.58	-2.6
3,995,861	+		GFF3954	0.58	-0.1
3,995,869	-		GFF3954	0.59	-0.2
3,995,869	-		GFF3954	0.59	+0.9
3,995,869	-		GFF3954	0.59	+0.2
3,995,869	-		GFF3954	0.59	+1.3
3,995,869	-		GFF3954	0.59	-2.4
3,995,873	+		GFF3954	0.59	+2.6
3,995,873	+		GFF3954	0.59	+1.0
3,995,873	+		GFF3954	0.59	+0.4
3,995,873	+		GFF3954	0.59	-1.2
3,995,881	-		GFF3954	0.60	-0.7
3,995,898	+		GFF3954	0.61	-1.4
3,995,926	+		GFF3954	0.64	-1.4
3,995,926	-		GFF3954	0.64	-0.0
3,995,931	+		GFF3954	0.65	-0.6
3,995,939	-		GFF3954	0.66	-1.1
3,995,948	+		GFF3954	0.66	-1.1
3,995,959	+		GFF3954	0.68	+0.4
3,995,962	-		GFF3954	0.68	+0.7
3,995,969	+		GFF3954	0.69	-1.9
3,995,969	+		GFF3954	0.69	-1.3
3,995,972	-		GFF3954	0.69	+0.3
3,996,001	+		GFF3954	0.72	-0.1
3,996,001	+		GFF3954	0.72	-0.9
3,996,004	-		GFF3954	0.72	-2.4
3,996,009	-		GFF3954	0.73	-0.7
3,996,009	-		GFF3954	0.73	-2.5
3,996,009	-		GFF3954	0.73	+0.0
3,996,009	-		GFF3954	0.73	+0.8
3,996,014	+		GFF3954	0.73	+0.4
3,996,014	+		GFF3954	0.73	-0.5
3,996,040	-		GFF3954	0.76	+0.3
3,996,040	-		GFF3954	0.76	+1.4
3,996,040	-		GFF3954	0.76	-0.4
3,996,060	+		GFF3954	0.78	+0.2
3,996,079	+		GFF3954	0.80	-0.7
3,996,085	+		GFF3954	0.80	-1.6
3,996,093	-		GFF3954	0.81	+0.3
3,996,093	-		GFF3954	0.81	-1.4
3,996,093	-		GFF3954	0.81	-0.2
3,996,093	-		GFF3954	0.81	+1.0
3,996,093	-		GFF3954	0.81	-0.3
3,996,093	-		GFF3954	0.81	-0.2
3,996,095	+		GFF3954	0.81	+1.0
3,996,098	+		GFF3954	0.82	-2.2
3,996,103	+		GFF3954	0.82	-0.8
3,996,108	+		GFF3954	0.83	-0.1
3,996,108	+		GFF3954	0.83	+1.0
3,996,108	+		GFF3954	0.83	-1.4
3,996,110	+		GFF3954	0.83	-0.7
3,996,110	+		GFF3954	0.83	-1.2
3,996,110	-		GFF3954	0.83	+0.6
3,996,115	+		GFF3954	0.83	-0.4
3,996,116	-		GFF3954	0.83	-0.9
3,996,118	-		GFF3954	0.84	+0.2
3,996,118	-		GFF3954	0.84	-2.3
3,996,134	-		GFF3954	0.85	+0.5
3,996,175	+		GFF3954	0.89	-0.2
3,996,183	-				+1.1
3,996,183	-				+0.7
3,996,183	-				-1.8
3,996,201	-				+0.4
3,996,202	-				-2.5
3,996,236	-				+0.4
3,996,251	+				-0.3
3,996,258	-				+0.1
3,996,268	-				-0.0
3,996,268	-				-2.3
3,996,284	+				-0.2
3,996,316	+		GFF3955	0.13	+0.4
3,996,320	-		GFF3955	0.15	-0.9
3,996,328	+		GFF3955	0.18	+1.1
3,996,328	+		GFF3955	0.18	+0.1
3,996,328	+		GFF3955	0.18	+0.6
3,996,336	-		GFF3955	0.20	+0.6
3,996,336	-		GFF3955	0.20	-0.7
3,996,336	-		GFF3955	0.20	-0.6
3,996,336	-		GFF3955	0.20	+1.4
3,996,349	-		GFF3955	0.25	+0.0
3,996,360	+		GFF3955	0.29	-0.9
3,996,367	-		GFF3955	0.31	-0.3
3,996,370	+		GFF3955	0.32	-0.2
3,996,394	+		GFF3955	0.41	-0.6
3,996,397	+		GFF3955	0.42	-0.3
3,996,397	+		GFF3955	0.42	-0.5
3,996,397	+		GFF3955	0.42	+0.4
3,996,397	+		GFF3955	0.42	-1.8
3,996,397	+		GFF3955	0.42	+0.6
3,996,397	+		GFF3955	0.42	-0.2
3,996,397	+		GFF3955	0.42	-1.2
3,996,399	+		GFF3955	0.42	+1.8
3,996,405	-		GFF3955	0.45	+0.5
3,996,405	-		GFF3955	0.45	-0.6
3,996,405	-		GFF3955	0.45	-0.3
3,996,405	-		GFF3955	0.45	-1.6
3,996,405	-		GFF3955	0.45	-0.5
3,996,405	-		GFF3955	0.45	-0.1
3,996,410	+		GFF3955	0.46	-0.3
3,996,413	-		GFF3955	0.47	+0.9
3,996,422	+		GFF3955	0.51	-0.6
3,996,435	+		GFF3955	0.55	+0.3
3,996,445	+		GFF3955	0.59	-0.9
3,996,445	+		GFF3955	0.59	+0.8
3,996,445	+		GFF3955	0.59	-1.0
3,996,445	+		GFF3955	0.59	-0.2
3,996,445	+		GFF3955	0.59	-0.8
3,996,445	+		GFF3955	0.59	-3.4
3,996,445	+		GFF3955	0.59	-0.0
3,996,445	+		GFF3955	0.59	-1.6
3,996,445	+		GFF3955	0.59	-0.2
3,996,445	+		GFF3955	0.59	-2.1
3,996,445	+		GFF3955	0.59	-0.1
3,996,445	+		GFF3955	0.59	+0.3
3,996,445	+		GFF3955	0.59	+0.5
3,996,445	+		GFF3955	0.59	-0.3
3,996,445	+		GFF3955	0.59	-0.7
3,996,445	+		GFF3955	0.59	+0.7
3,996,445	+		GFF3955	0.59	-1.1
3,996,453	-		GFF3955	0.61	+0.4
3,996,453	-		GFF3955	0.61	+0.5
3,996,453	-		GFF3955	0.61	-0.7
3,996,453	-		GFF3955	0.61	-0.2
3,996,453	-		GFF3955	0.61	-1.6
3,996,453	-		GFF3955	0.61	-0.2
3,996,453	-		GFF3955	0.61	-2.8
3,996,453	-		GFF3955	0.61	+0.8
3,996,453	-		GFF3955	0.61	+0.0
3,996,453	-		GFF3955	0.61	-0.4
3,996,453	-		GFF3955	0.61	-1.2
3,996,458	-		GFF3955	0.63	-0.6
3,996,460	-		GFF3955	0.64	-1.6
3,996,526	-		GFF3955	0.87	-1.7
3,996,544	-				-0.9
3,996,584	+				-0.4
3,996,606	+				+0.7
3,996,613	+				+0.4
3,996,615	+				+1.4
3,996,615	+				+0.5
3,996,615	-				+0.1
3,996,623	-				-0.4
3,996,707	-				+0.9
3,996,735	-				-2.1
3,996,751	-				-1.3
3,996,757	-				+0.6
3,996,873	-				-0.6
3,996,878	-				-1.6
3,996,922	+				-1.4
3,996,923	-				+0.8
3,996,930	-				-1.6
3,996,953	-				+0.7
3,996,969	+				+0.8
3,996,969	+				-2.0
3,996,974	+				+1.1
3,996,974	+				-0.7
3,996,977	-				+0.6
3,996,981	+				-0.8
3,996,982	+				+0.7
3,996,982	+				-0.6
3,996,982	+				-1.6
3,996,990	-				+0.2
3,997,022	-				-1.5
3,997,035	+				+1.2
3,997,035	+				-1.2
3,997,042	-				-0.6
3,997,043	-				-1.7
3,997,043	-				-2.4
3,997,043	-				-0.7
3,997,075	+				-2.0
3,997,088	+				+0.4
3,997,125	-				+0.8
3,997,127	-				+0.4
3,997,134	+				-0.1
3,997,136	+		GFF3956	0.10	-0.4
3,997,144	-		GFF3956	0.10	-0.4
3,997,168	+		GFF3956	0.12	-0.1
3,997,168	+		GFF3956	0.12	-1.7
3,997,168	+		GFF3956	0.12	-0.2
3,997,173	-		GFF3956	0.12	-0.3
3,997,175	+		GFF3956	0.12	-1.2
3,997,175	+		GFF3956	0.12	+1.3
3,997,175	+		GFF3956	0.12	-2.1
3,997,176	-		GFF3956	0.12	-0.6
3,997,198	-		GFF3956	0.13	-0.4
3,997,204	+		GFF3956	0.13	-0.4
3,997,212	-		GFF3956	0.14	-1.2
3,997,212	-		GFF3956	0.14	-1.4
3,997,212	-		GFF3956	0.14	-0.4
3,997,220	+		GFF3956	0.14	+0.5
3,997,222	+		GFF3956	0.14	-0.5
3,997,232	+		GFF3956	0.15	-0.2
3,997,247	-		GFF3956	0.15	+1.5
3,997,248	+		GFF3956	0.15	-2.0
3,997,255	+		GFF3956	0.16	-1.9
3,997,263	-		GFF3956	0.16	+0.3
3,997,265	+		GFF3956	0.16	-2.2
3,997,265	+		GFF3956	0.16	-0.3
3,997,265	+		GFF3956	0.16	-1.7
3,997,273	-		GFF3956	0.16	-1.9
3,997,280	-		GFF3956	0.17	+0.4
3,997,286	+		GFF3956	0.17	-1.0
3,997,286	+		GFF3956	0.17	-1.3
3,997,294	-		GFF3956	0.17	+0.0
3,997,294	-		GFF3956	0.17	+0.0
3,997,294	-		GFF3956	0.17	-1.9
3,997,294	-		GFF3956	0.17	+0.1
3,997,309	-		GFF3956	0.18	+0.9
3,997,309	-		GFF3956	0.18	+1.2
3,997,325	-		GFF3956	0.19	-1.4
3,997,335	-		GFF3956	0.19	+0.2
3,997,336	-		GFF3956	0.19	+0.1
3,997,341	+		GFF3956	0.20	-1.3
3,997,341	+		GFF3956	0.20	-0.5
3,997,347	-		GFF3956	0.20	-0.5
3,997,357	-		GFF3956	0.20	-1.3
3,997,367	+		GFF3956	0.21	-1.6
3,997,368	+		GFF3956	0.21	-0.4
3,997,375	-		GFF3956	0.21	+0.7
3,997,375	-		GFF3956	0.21	-0.6
3,997,376	-		GFF3956	0.21	+0.3
3,997,376	-		GFF3956	0.21	-0.3
3,997,376	-		GFF3956	0.21	+0.3
3,997,405	-		GFF3956	0.23	+0.8
3,997,407	-		GFF3956	0.23	+0.2
3,997,409	+		GFF3956	0.23	-0.2
3,997,416	+		GFF3956	0.23	+0.4
3,997,443	+		GFF3956	0.25	+0.1
3,997,443	+		GFF3956	0.25	+0.4
3,997,468	+		GFF3956	0.26	+0.7
3,997,468	-		GFF3956	0.26	+0.9
3,997,468	-		GFF3956	0.26	+0.4
3,997,487	+		GFF3956	0.27	-0.5
3,997,487	+		GFF3956	0.27	+0.9
3,997,488	-		GFF3956	0.27	+0.1
3,997,494	+		GFF3956	0.27	-1.8
3,997,494	+		GFF3956	0.27	+0.2
3,997,495	-		GFF3956	0.27	-0.2
3,997,495	-		GFF3956	0.27	+0.8
3,997,502	-		GFF3956	0.27	-0.6
3,997,511	+		GFF3956	0.28	-0.2
3,997,524	+		GFF3956	0.28	-1.6
3,997,524	+		GFF3956	0.28	-0.4
3,997,562	-		GFF3956	0.30	-0.6