Strain Fitness in Sphingobium sp. HT1-2 around GFF3945

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,980,895	-		GFF3943	0.75	+0.3
3,980,923	-		GFF3943	0.80	-0.4
3,980,931	+		GFF3943	0.82	+0.7
3,980,931	+		GFF3943	0.82	+0.3
3,980,939	-		GFF3943	0.83	+1.4
3,980,939	-		GFF3943	0.83	-0.1
3,980,939	-		GFF3943	0.83	-1.1
3,980,973	-		GFF3943	0.89	-0.1
3,980,987	-				-0.2
3,980,989	+				-0.2
3,980,997	-				-0.6
3,981,018	-				-0.6
3,981,020	-				-2.4
3,981,023	+				-1.1
3,981,046	+				+0.7
3,981,099	+				+0.1
3,981,133	-				-0.3
3,981,156	+				-0.6
3,981,176	+				-1.1
3,981,181	+				-0.3
3,981,181	+				-0.3
3,981,189	-		GFF3944	0.10	-0.7
3,981,189	-		GFF3944	0.10	-0.2
3,981,189	-		GFF3944	0.10	-1.3
3,981,189	-		GFF3944	0.10	+0.1
3,981,206	+		GFF3944	0.14	-0.2
3,981,212	+		GFF3944	0.15	+0.3
3,981,226	+		GFF3944	0.18	-0.1
3,981,228	+		GFF3944	0.18	-0.9
3,981,238	+		GFF3944	0.20	+1.9
3,981,240	+		GFF3944	0.21	+0.8
3,981,248	-		GFF3944	0.23	-1.2
3,981,261	-		GFF3944	0.25	-0.5
3,981,278	+		GFF3944	0.29	-0.5
3,981,285	+		GFF3944	0.30	-0.2
3,981,295	+		GFF3944	0.32	-1.2
3,981,339	+		GFF3944	0.42	-0.7
3,981,344	+		GFF3944	0.43	+0.3
3,981,347	-		GFF3944	0.44	-0.8
3,981,351	+		GFF3944	0.44	+1.5
3,981,353	+		GFF3944	0.45	+0.1
3,981,359	-		GFF3944	0.46	-1.3
3,981,361	+		GFF3944	0.46	+0.2
3,981,361	+		GFF3944	0.46	-0.2
3,981,377	+		GFF3944	0.50	-0.2
3,981,380	+		GFF3944	0.51	+1.9
3,981,385	-		GFF3944	0.52	-2.1
3,981,401	+		GFF3944	0.55	+1.5
3,981,425	+		GFF3944	0.60	-0.7
3,981,425	+		GFF3944	0.60	+0.5
3,981,435	+		GFF3944	0.62	+0.6
3,981,443	-		GFF3944	0.64	+0.7
3,981,444	-		GFF3944	0.64	-0.4
3,981,455	-		GFF3944	0.66	-0.1
3,981,466	+		GFF3944	0.69	-0.0
3,981,467	+		GFF3944	0.69	+0.3
3,981,467	+		GFF3944	0.69	+0.7
3,981,467	+		GFF3944	0.69	-0.6
3,981,473	-		GFF3944	0.70	+0.6
3,981,474	-		GFF3944	0.70	-0.3
3,981,474	-		GFF3944	0.70	+0.9
3,981,488	+		GFF3944	0.73	-0.2
3,981,488	+		GFF3944	0.73	-0.0
3,981,488	+		GFF3944	0.73	+0.2
3,981,488	+		GFF3944	0.73	-1.5
3,981,488	+		GFF3944	0.73	+0.3
3,981,488	+		GFF3944	0.73	+1.1
3,981,488	+		GFF3944	0.73	-0.1
3,981,488	+		GFF3944	0.73	-1.4
3,981,495	+		GFF3944	0.75	+0.3
3,981,496	-		GFF3944	0.75	-0.3
3,981,496	-		GFF3944	0.75	-0.9
3,981,496	-		GFF3944	0.75	+0.1
3,981,503	-		GFF3944	0.77	-1.4
3,981,513	-		GFF3944	0.79	-2.1
3,981,518	-		GFF3944	0.80	+0.2
3,981,551	-		GFF3944	0.87	-0.1
3,981,551	-		GFF3944	0.87	-0.7
3,981,551	-		GFF3944	0.87	-0.1
3,981,577	+				-0.2
3,981,590	+				+0.7
3,981,595	+				-0.3
3,981,600	+				-0.1
3,981,605	+				-0.5
3,981,607	+				+0.6
3,981,609	+				+0.3
3,981,609	+				-0.6
3,981,613	-				-0.6
3,981,614	+				-0.2
3,981,622	-				-0.0
3,981,627	-				+1.0
3,981,671	-				+0.0
3,981,694	-				+0.6
3,981,701	+				-1.4
3,981,701	+				+0.0
3,981,709	-				+0.7
3,981,721	-				-0.6
3,981,741	+				-1.3
3,981,748	+				+1.3
3,981,756	-				-2.4
3,981,758	+				+1.3
3,981,759	-				+0.4
3,981,765	-				-1.5
3,981,793	-				+0.2
3,981,840	+				-0.6
3,981,861	+				+0.8
3,981,869	-				-0.7
3,981,869	-				+0.4
3,981,886	-				+0.7
3,982,096	-		GFF3945	0.14	-1.4
3,982,389	-		GFF3945	0.35	-0.2
3,982,745	-		GFF3945	0.59	-1.8
3,983,038	-		GFF3945	0.80	-1.3
3,983,040	+		GFF3945	0.80	+0.3
3,983,040	+		GFF3945	0.80	-2.3
3,983,040	+		GFF3945	0.80	-2.1
3,983,048	-		GFF3945	0.80	-1.5
3,983,048	-		GFF3945	0.80	+0.6
3,983,053	-		GFF3945	0.81	+1.0
3,983,056	-		GFF3945	0.81	-0.6
3,983,058	+		GFF3945	0.81	-0.5
3,983,058	+		GFF3945	0.81	+0.2
3,983,058	+		GFF3945	0.81	+0.7
3,983,058	+		GFF3945	0.81	+0.2
3,983,060	+		GFF3945	0.81	-1.3
3,983,061	-		GFF3945	0.81	-1.4
3,983,061	-		GFF3945	0.81	-0.4
3,983,066	-		GFF3945	0.82	+0.2
3,983,066	-		GFF3945	0.82	-0.1
3,983,071	+		GFF3945	0.82	-0.3
3,983,076	+		GFF3945	0.82	-0.9
3,983,076	+		GFF3945	0.82	+0.8
3,983,086	-		GFF3945	0.83	-0.4
3,983,091	+		GFF3945	0.83	-0.8
3,983,091	+		GFF3945	0.83	+0.1
3,983,091	+		GFF3945	0.83	+0.6
3,983,099	-		GFF3945	0.84	-1.7
3,983,099	-		GFF3945	0.84	-1.2
3,983,099	-		GFF3945	0.84	-1.0
3,983,099	-		GFF3945	0.84	+0.9
3,983,100	+		GFF3945	0.84	-0.2
3,983,100	-		GFF3945	0.84	-0.5
3,983,107	+		GFF3945	0.84	-0.9
3,983,110	-		GFF3945	0.85	-0.2
3,983,115	-		GFF3945	0.85	-0.2
3,983,115	-		GFF3945	0.85	-1.2
3,983,126	-		GFF3945	0.86	-0.7
3,983,128	+		GFF3945	0.86	-1.9
3,983,128	+		GFF3945	0.86	-0.9
3,983,128	+		GFF3945	0.86	+0.6
3,983,136	-		GFF3945	0.86	-0.7
3,983,136	-		GFF3945	0.86	-0.1
3,983,137	+		GFF3945	0.86	-1.9
3,983,137	+		GFF3945	0.86	+0.9
3,983,137	+		GFF3945	0.86	-2.4
3,983,137	+		GFF3945	0.86	-0.3
3,983,145	-		GFF3945	0.87	+1.7
3,983,145	-		GFF3945	0.87	+0.3
3,983,145	-		GFF3945	0.87	+0.4
3,983,154	+		GFF3945	0.88	-1.2
3,983,157	-		GFF3945	0.88	+1.2
3,983,169	+		GFF3945	0.89	-0.4
3,983,170	+		GFF3945	0.89	+1.2
3,983,170	+		GFF3945	0.89	+0.4
3,983,171	-		GFF3945	0.89	-1.1
3,983,173	+		GFF3945	0.89	-0.3
3,983,173	+		GFF3945	0.89	+0.1
3,983,173	+		GFF3945	0.89	+0.1
3,983,177	-		GFF3945	0.89	+0.0
3,983,181	-		GFF3945	0.90	-0.2
3,983,295	+				+1.0
3,983,302	+				+0.1
3,983,302	+				+0.5
3,983,302	+				+0.0
3,983,302	+				+0.8
3,983,302	+				-1.2
3,983,302	+				-0.4
3,983,310	-				-0.9
3,983,310	-				-0.5
3,983,310	-				+1.1
3,983,310	-				-0.7
3,983,310	-				+0.6
3,983,312	+				+0.8
3,983,312	+				-0.6
3,983,320	-				-0.7
3,983,320	-				-0.6
3,983,320	-				+0.6
3,983,320	-				+0.8
3,983,327	+				+0.6
3,983,332	+				-0.8
3,983,334	+				-3.0
3,983,335	-				-1.4
3,983,354	+				-0.6
3,983,354	+				-0.6
3,983,354	+				-0.6
3,983,354	+				-0.6
3,983,354	+				-0.8
3,983,354	+				+0.6
3,983,354	+				+0.6
3,983,354	+				+0.6
3,983,360	-				+0.3
3,983,360	-				-0.3
3,983,360	-				+0.8
3,983,361	-				-0.6
3,983,362	-				+0.3
3,983,373	+				+0.2
3,983,373	+				-1.4
3,983,378	+				+0.2
3,983,391	+				-0.8
3,983,416	-				+0.4
3,983,458	+				-0.6
3,983,467	+				+1.1
3,983,468	+				-0.2
3,983,468	+				-0.3
3,983,471	-				+0.0
3,983,473	+				-1.0
3,983,473	+				-0.3
3,983,473	+				-0.7
3,983,480	+				-0.7
3,983,481	-				-1.5
3,983,488	-				-0.2
3,983,498	-				+0.0
3,983,514	+				-1.7
3,983,517	+				-0.1
3,983,517	+				-1.6
3,983,525	-				-1.9
3,983,525	-				-0.9
3,983,525	-				+0.5
3,983,533	+				+0.5
3,983,538	+				-0.7
3,983,549	-				-2.8
3,983,551	-				-1.3
3,983,570	-				+0.3
3,983,570	-				-1.3
3,983,570	-				+0.1
3,983,578	+				+0.6
3,983,592	-				+1.3
3,983,630	-				+1.1
3,983,653	+				-0.4
3,983,653	+				+1.7
3,983,673	+				-1.4
3,983,678	+				-0.2
3,983,679	-				-0.5
3,983,683	+				+0.2
3,983,683	+				-0.9
3,983,683	+				+0.3
3,983,683	+				+0.8
3,983,683	+				+0.1
3,983,683	+				+1.1
3,983,683	+				-1.2
3,983,683	+				+1.5
3,983,683	+				-0.9
3,983,683	+				-0.4
3,983,683	+				+0.8
3,983,683	+				-0.0
3,983,683	+				+0.0
3,983,683	+				-0.3
3,983,683	+				-1.5
3,983,690	+				-1.0
3,983,691	-				-1.9
3,983,691	-				+0.2
3,983,691	-				-2.5
3,983,691	-				-0.6
3,983,691	-				-1.0
3,983,691	-				-0.5
3,983,691	-				-0.1
3,983,691	-				+1.0
3,983,691	-				-0.9
3,983,691	-				+1.2
3,983,693	-				-0.3
3,983,695	+				-0.4
3,983,695	+				+1.6
3,983,698	-				-0.5
3,983,703	-				-0.6
3,983,703	-				-0.7
3,983,703	-				+0.3
3,983,703	-				-0.8
3,983,708	-				-0.1
3,983,742	-				-1.1
3,983,742	-				+1.2
3,983,743	-				-1.8
3,983,743	-				-1.0
3,983,781	+		GFF3946	0.10	-0.7
3,983,791	+		GFF3946	0.11	-0.5
3,983,791	+		GFF3946	0.11	-0.5
3,983,791	+		GFF3946	0.11	+0.4
3,983,794	-		GFF3946	0.11	-0.1
3,983,794	-		GFF3946	0.11	-0.8
3,983,794	-		GFF3946	0.11	-1.2
3,983,799	-		GFF3946	0.11	-0.2
3,983,799	-		GFF3946	0.11	+0.4
3,983,799	-		GFF3946	0.11	-1.1
3,983,799	-		GFF3946	0.11	-0.3
3,983,801	-		GFF3946	0.11	-0.6
3,983,837	-		GFF3946	0.12	-1.9
3,983,885	+		GFF3946	0.14	-1.7
3,983,885	+		GFF3946	0.14	+0.2
3,983,893	-		GFF3946	0.14	-1.0
3,983,893	-		GFF3946	0.14	-0.2
3,983,925	+		GFF3946	0.15	+1.8
3,983,936	+		GFF3946	0.16	-0.4
3,983,939	-		GFF3946	0.16	-0.2
3,983,947	+		GFF3946	0.16	-0.2
3,983,947	+		GFF3946	0.16	-1.1
3,983,947	+		GFF3946	0.16	-1.1
3,983,955	-		GFF3946	0.16	-0.7
3,983,955	-		GFF3946	0.16	+0.8
3,983,955	-		GFF3946	0.16	-1.2
3,983,955	-		GFF3946	0.16	-1.2
3,983,960	-		GFF3946	0.17	+0.6
3,983,970	-		GFF3946	0.17	+0.6
3,983,978	+		GFF3946	0.17	-2.3
3,983,986	-		GFF3946	0.18	-1.2
3,984,018	-		GFF3946	0.19	+1.2
3,984,048	+		GFF3946	0.20	-2.4
3,984,053	-		GFF3946	0.20	+0.5
3,984,057	+		GFF3946	0.20	-0.2
3,984,059	+		GFF3946	0.20	-0.8
3,984,075	-		GFF3946	0.21	+0.7
3,984,124	-		GFF3946	0.22	+1.0
3,984,128	+		GFF3946	0.22	+1.4
3,984,128	+		GFF3946	0.22	+1.4
3,984,133	+		GFF3946	0.23	+0.3
3,984,133	+		GFF3946	0.23	+0.5
3,984,136	-		GFF3946	0.23	-1.3
3,984,136	-		GFF3946	0.23	-1.3
3,984,136	-		GFF3946	0.23	-1.7
3,984,141	-		GFF3946	0.23	-0.9
3,984,141	-		GFF3946	0.23	-1.0
3,984,141	-		GFF3946	0.23	-0.9
3,984,152	-		GFF3946	0.23	-1.4
3,984,152	-		GFF3946	0.23	-0.2
3,984,172	+		GFF3946	0.24	+0.5
3,984,198	-		GFF3946	0.25	-1.6
3,984,204	+		GFF3946	0.25	-0.5
3,984,204	-		GFF3946	0.25	-0.2
3,984,204	-		GFF3946	0.25	+1.2
3,984,205	-		GFF3946	0.25	-1.4
3,984,205	-		GFF3946	0.25	-2.1
3,984,209	+		GFF3946	0.25	-0.6
3,984,212	-		GFF3946	0.25	-0.1
3,984,264	+		GFF3946	0.27	+1.4
3,984,272	-		GFF3946	0.27	-2.0
3,984,300	-		GFF3946	0.28	+0.3
3,984,306	+		GFF3946	0.29	-0.7
3,984,314	-		GFF3946	0.29	+0.1
3,984,325	-		GFF3946	0.29	-1.3
3,984,327	+		GFF3946	0.29	-0.3
3,984,327	+		GFF3946	0.29	+1.0
3,984,327	+		GFF3946	0.29	+0.1
3,984,327	+		GFF3946	0.29	+1.4