Strain Fitness in Sphingobium sp. HT1-2 around GFF3927

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,965,725	-				+1.8
3,965,755	+				-1.2
3,965,755	+				+0.9
3,965,763	-				-0.8
3,965,772	+				-0.8
3,965,772	+				-0.0
3,965,780	-				-1.2
3,965,817	+				+0.5
3,965,817	+				+0.1
3,965,817	+				-0.6
3,965,817	+				-1.0
3,965,817	+				+0.0
3,965,817	+				-0.5
3,965,817	+				+0.3
3,965,817	+				+0.5
3,965,817	+				-0.3
3,965,817	+				-1.1
3,965,825	-				+0.4
3,965,825	-				+0.3
3,965,825	-				-0.2
3,965,825	-				-0.1
3,965,832	+				+0.0
3,965,832	+				-1.0
3,965,834	+				-0.9
3,965,835	-				-0.7
3,965,835	-				+0.6
3,965,840	-				+0.5
3,965,875	+				+0.6
3,965,882	-				-1.7
3,965,883	-				+0.6
3,965,883	-				-0.5
3,965,885	+				-1.1
3,965,904	+		GFF3926	0.10	-1.0
3,965,908	+		GFF3926	0.11	-2.1
3,965,934	-		GFF3926	0.14	-2.3
3,965,943	+		GFF3926	0.15	-1.9
3,965,943	+		GFF3926	0.15	+1.3
3,965,951	-		GFF3926	0.16	-0.8
3,965,951	-		GFF3926	0.16	+0.6
3,965,956	-		GFF3926	0.16	-0.3
3,965,976	-		GFF3926	0.19	-0.8
3,965,976	-		GFF3926	0.19	+0.3
3,965,987	-		GFF3926	0.20	-1.4
3,966,004	-		GFF3926	0.22	-1.4
3,966,009	-		GFF3926	0.23	-1.3
3,966,012	+		GFF3926	0.23	+0.5
3,966,015	-		GFF3926	0.23	+1.1
3,966,017	+		GFF3926	0.24	+0.2
3,966,017	+		GFF3926	0.24	+0.0
3,966,018	+		GFF3926	0.24	-1.8
3,966,033	+		GFF3926	0.26	-0.2
3,966,033	+		GFF3926	0.26	-2.4
3,966,039	+		GFF3926	0.26	-0.2
3,966,039	+		GFF3926	0.26	-1.5
3,966,039	+		GFF3926	0.26	+1.9
3,966,039	+		GFF3926	0.26	+1.0
3,966,039	-		GFF3926	0.26	+1.0
3,966,047	-		GFF3926	0.27	-0.7
3,966,069	+		GFF3926	0.30	-0.3
3,966,069	+		GFF3926	0.30	-0.5
3,966,069	+		GFF3926	0.30	-1.5
3,966,069	+		GFF3926	0.30	-0.9
3,966,077	-		GFF3926	0.31	-0.4
3,966,077	-		GFF3926	0.31	+1.7
3,966,077	-		GFF3926	0.31	+0.6
3,966,077	-		GFF3926	0.31	-1.6
3,966,088	+		GFF3926	0.32	-0.5
3,966,102	+		GFF3926	0.34	-0.6
3,966,115	-		GFF3926	0.35	-1.2
3,966,129	+		GFF3926	0.37	-1.4
3,966,137	-		GFF3926	0.38	+2.3
3,966,161	-		GFF3926	0.41	-0.0
3,966,165	+		GFF3926	0.41	+0.3
3,966,168	-		GFF3926	0.42	+0.8
3,966,183	+		GFF3926	0.43	-1.9
3,966,183	+		GFF3926	0.43	+0.2
3,966,215	-		GFF3926	0.47	+1.0
3,966,237	+		GFF3926	0.50	+0.3
3,966,247	+		GFF3926	0.51	+1.2
3,966,247	+		GFF3926	0.51	+0.2
3,966,247	+		GFF3926	0.51	-0.9
3,966,247	+		GFF3926	0.51	+1.6
3,966,255	-		GFF3926	0.52	-0.3
3,966,264	-		GFF3926	0.53	-0.4
3,966,281	+		GFF3926	0.55	-0.7
3,966,281	+		GFF3926	0.55	+0.7
3,966,281	+		GFF3926	0.55	-1.0
3,966,281	+		GFF3926	0.55	+0.4
3,966,287	-		GFF3926	0.56	-0.4
3,966,289	-		GFF3926	0.56	-1.6
3,966,289	-		GFF3926	0.56	-2.0
3,966,289	-		GFF3926	0.56	-0.3
3,966,289	-		GFF3926	0.56	-0.5
3,966,295	+		GFF3926	0.57	+0.9
3,966,295	+		GFF3926	0.57	+0.0
3,966,295	+		GFF3926	0.57	-0.9
3,966,303	-		GFF3926	0.58	+0.3
3,966,303	-		GFF3926	0.58	+0.9
3,966,304	-		GFF3926	0.58	-0.3
3,966,337	-		GFF3926	0.62	-0.3
3,966,345	-		GFF3926	0.63	+0.5
3,966,345	-		GFF3926	0.63	+0.1
3,966,350	-		GFF3926	0.63	-0.5
3,966,355	-		GFF3926	0.64	-1.5
3,966,358	+		GFF3926	0.64	-0.3
3,966,373	-		GFF3926	0.66	+0.2
3,966,394	-		GFF3926	0.69	-1.1
3,966,399	-		GFF3926	0.69	+0.0
3,966,410	+		GFF3926	0.71	-2.7
3,966,410	+		GFF3926	0.71	-0.5
3,966,410	+		GFF3926	0.71	-1.3
3,966,410	+		GFF3926	0.71	-0.5
3,966,418	-		GFF3926	0.72	-1.3
3,966,418	-		GFF3926	0.72	-1.1
3,966,418	-		GFF3926	0.72	-1.7
3,966,456	-		GFF3926	0.76	+0.9
3,966,461	-		GFF3926	0.77	+0.4
3,966,465	-		GFF3926	0.77	-1.4
3,966,523	+		GFF3926	0.84	+0.5
3,966,544	+		GFF3926	0.87	-1.3
3,966,552	+		GFF3926	0.88	-0.3
3,966,555	-		GFF3926	0.88	+0.1
3,966,579	-				+1.2
3,966,581	+				-0.1
3,966,581	+				-1.9
3,966,581	-				-1.2
3,966,589	-				-1.0
3,966,589	-				-1.8
3,966,589	-				-0.4
3,966,594	+				-0.9
3,966,594	+				-1.3
3,966,597	-				-0.6
3,966,602	+				-0.5
3,966,602	-				-0.5
3,966,607	+				-0.4
3,966,610	-				-2.0
3,966,612	-				-1.3
3,966,617	+				+0.0
3,966,617	+				+1.2
3,966,617	+				-0.7
3,966,630	+				+0.7
3,966,630	+				-0.6
3,966,630	+				+0.3
3,966,633	-				+0.1
3,966,633	-				+0.0
3,966,633	-				-0.5
3,966,638	-				-0.6
3,966,638	-				+0.3
3,966,640	+				+0.3
3,966,648	-				-1.2
3,966,648	-				-0.6
3,966,708	+				-0.5
3,966,708	+				-0.4
3,966,710	+				-0.9
3,966,716	-				+0.3
3,966,716	-				+0.5
3,966,716	-				+0.2
3,966,768	+		GFF3927	0.18	-1.3
3,966,853	-		GFF3927	0.53	+2.0
3,966,899	+		GFF3927	0.72	-1.2
3,966,902	-		GFF3927	0.73	-1.8
3,966,904	+		GFF3927	0.74	-0.3
3,966,904	+		GFF3927	0.74	-0.7
3,966,904	+		GFF3927	0.74	-1.2
3,966,907	-		GFF3927	0.75	-0.4
3,966,911	+		GFF3927	0.76	-0.3
3,966,912	-		GFF3927	0.77	-2.8
3,966,912	-		GFF3927	0.77	-2.2
3,966,912	-		GFF3927	0.77	-0.9
3,966,912	-		GFF3927	0.77	-2.6
3,966,924	+		GFF3927	0.82	-1.3
3,966,926	+		GFF3927	0.83	-0.6
3,966,961	+				-0.1
3,966,961	+				+0.8
3,966,969	-				-2.9
3,967,005	+				-2.1
3,967,006	-				+1.3
3,967,006	-				-0.6
3,967,013	-				-0.3
3,967,013	-				-1.7
3,967,062	+				-1.6
3,967,068	+				+1.4
3,967,068	+				+0.4
3,967,068	+				-0.4
3,967,068	+				+0.3
3,967,076	-				-0.4
3,967,076	-				-0.7
3,967,082	+				-0.1
3,967,083	-				+0.4
3,967,085	-				+0.6
3,967,093	-				+0.1
3,967,111	+				-2.4
3,967,111	+				+1.3
3,967,121	+				-1.2
3,967,134	+		GFF3928	0.11	+0.2
3,967,158	+		GFF3928	0.16	-0.1
3,967,158	+		GFF3928	0.16	-0.1
3,967,173	+		GFF3928	0.20	-2.2
3,967,181	-		GFF3928	0.21	-0.3
3,967,185	-		GFF3928	0.22	+0.6
3,967,192	+		GFF3928	0.24	+0.7
3,967,200	-		GFF3928	0.25	+0.2
3,967,214	+		GFF3928	0.29	-1.1
3,967,214	+		GFF3928	0.29	-1.2
3,967,218	+		GFF3928	0.29	-1.6
3,967,218	+		GFF3928	0.29	+1.1
3,967,219	+		GFF3928	0.30	+0.6
3,967,221	-		GFF3928	0.30	-0.2
3,967,226	-		GFF3928	0.31	-0.3
3,967,227	-		GFF3928	0.31	-0.6
3,967,227	-		GFF3928	0.31	-0.3
3,967,227	-		GFF3928	0.31	-1.1
3,967,254	-		GFF3928	0.37	-1.3
3,967,258	+		GFF3928	0.38	-1.4
3,967,261	-		GFF3928	0.39	-0.7
3,967,274	+		GFF3928	0.42	-0.7
3,967,274	+		GFF3928	0.42	+1.0
3,967,290	+		GFF3928	0.45	+0.6
3,967,298	-		GFF3928	0.47	-1.5
3,967,298	-		GFF3928	0.47	+0.8
3,967,361	+		GFF3928	0.61	+0.9
3,967,370	+		GFF3928	0.63	-1.1
3,967,370	+		GFF3928	0.63	+0.5
3,967,370	+		GFF3928	0.63	-1.5
3,967,378	-		GFF3928	0.64	-0.6
3,967,378	-		GFF3928	0.64	-0.7
3,967,378	-		GFF3928	0.64	+0.7
3,967,405	-		GFF3928	0.70	+0.4
3,967,444	+		GFF3928	0.79	-1.0
3,967,449	+		GFF3928	0.80	-0.7
3,967,478	+		GFF3928	0.86	-1.0
3,967,478	+		GFF3928	0.86	-0.3
3,967,486	-		GFF3928	0.88	-1.3
3,967,486	-		GFF3928	0.88	-0.7
3,967,581	+				-1.0
3,967,589	-				-0.9
3,967,589	-				-0.9
3,967,599	-				-0.3
3,967,624	+				+0.2
3,967,633	-				-0.1
3,967,636	+				-1.5
3,967,649	+				+0.7
3,967,649	+				-0.5
3,967,649	+				+0.0
3,967,649	+				+1.6
3,967,649	+				-0.5
3,967,649	+				+0.7
3,967,652	-				+0.1
3,967,656	-				-0.4
3,967,657	-				+1.1
3,967,657	-				-2.5
3,967,657	-				-2.4
3,967,657	-				+0.7
3,967,657	-				-2.3
3,967,657	-				+0.2
3,967,657	-				+0.0
3,967,657	-				-0.2
3,967,753	+				-1.4
3,967,766	+				-1.7
3,967,865	-		GFF3929	0.10	-1.5