Strain Fitness in Sphingobium sp. HT1-2 around GFF3847

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,885,496	+		GFF3846	0.28	-0.9
3,885,496	+		GFF3846	0.28	-0.4
3,885,504	-		GFF3846	0.29	-0.4
3,885,504	-		GFF3846	0.29	-0.5
3,885,504	-		GFF3846	0.29	-1.2
3,885,504	-		GFF3846	0.29	+0.3
3,885,519	+		GFF3846	0.30	-0.2
3,885,545	-		GFF3846	0.32	-0.4
3,885,551	+		GFF3846	0.32	+0.7
3,885,551	+		GFF3846	0.32	-0.5
3,885,572	+		GFF3846	0.34	-1.7
3,885,574	-		GFF3846	0.34	-0.1
3,885,584	-		GFF3846	0.35	+1.1
3,885,592	+		GFF3846	0.35	-1.3
3,885,593	-		GFF3846	0.36	-0.4
3,885,645	+		GFF3846	0.39	+0.9
3,885,699	+		GFF3846	0.43	-0.4
3,885,704	+		GFF3846	0.44	-1.4
3,885,704	+		GFF3846	0.44	-0.8
3,885,712	-		GFF3846	0.44	-0.1
3,885,713	-		GFF3846	0.45	-0.8
3,885,718	+		GFF3846	0.45	+0.3
3,885,728	+		GFF3846	0.46	-1.8
3,885,785	+		GFF3846	0.50	-0.3
3,885,790	+		GFF3846	0.50	-0.3
3,885,793	-		GFF3846	0.50	+0.4
3,885,823	-		GFF3846	0.53	+0.3
3,885,861	-		GFF3846	0.56	-1.1
3,885,864	+		GFF3846	0.56	-1.7
3,885,871	-		GFF3846	0.56	-2.5
3,885,877	+		GFF3846	0.57	-0.1
3,885,889	+		GFF3846	0.58	+1.6
3,885,959	+		GFF3846	0.63	+0.8
3,885,967	-		GFF3846	0.63	-1.6
3,885,967	-		GFF3846	0.63	-0.6
3,886,019	-		GFF3846	0.67	-2.3
3,886,036	-		GFF3846	0.69	+0.9
3,886,036	-		GFF3846	0.69	-1.0
3,886,036	-		GFF3846	0.69	-1.1
3,886,051	+		GFF3846	0.70	-1.1
3,886,068	-		GFF3846	0.71	+0.4
3,886,091	+		GFF3846	0.73	+0.8
3,886,092	+		GFF3846	0.73	-0.1
3,886,100	+		GFF3846	0.73	-1.0
3,886,105	+		GFF3846	0.74	+0.8
3,886,108	-		GFF3846	0.74	-0.1
3,886,121	-		GFF3846	0.75	+2.0
3,886,137	+		GFF3846	0.76	-0.0
3,886,137	+		GFF3846	0.76	+0.3
3,886,137	+		GFF3846	0.76	-1.1
3,886,145	-		GFF3846	0.77	-0.7
3,886,145	-		GFF3846	0.77	+1.0
3,886,160	+		GFF3846	0.78	-0.6
3,886,160	-		GFF3846	0.78	+0.1
3,886,168	-		GFF3846	0.78	+0.6
3,886,168	-		GFF3846	0.78	-1.5
3,886,177	-		GFF3846	0.79	+1.1
3,886,232	-		GFF3846	0.83	-1.0
3,886,240	+		GFF3846	0.84	-0.5
3,886,243	-		GFF3846	0.84	+1.1
3,886,245	+		GFF3846	0.84	+0.7
3,886,269	-		GFF3846	0.86	-0.3
3,886,299	-		GFF3846	0.88	-1.0
3,886,315	+		GFF3846	0.89	+0.1
3,886,316	+		GFF3846	0.89	-1.9
3,886,332	-				-0.1
3,886,358	+				+1.5
3,886,359	+				+1.6
3,886,359	+				-1.6
3,886,365	+				-1.4
3,886,366	-				+0.6
3,886,366	-				-0.2
3,886,367	-				-1.1
3,886,367	-				+0.1
3,886,367	-				-0.4
3,886,371	+				+0.1
3,886,431	-				-0.8
3,886,438	+				-1.7
3,886,438	+				+0.2
3,886,463	+				+0.7
3,886,468	+				-1.3
3,886,468	+				+0.3
3,886,471	-				+0.8
3,886,473	+				-1.0
3,886,476	-				+1.1
3,886,478	+				+1.0
3,886,486	+				+1.9
3,886,493	-				-0.3
3,886,495	+				+0.8
3,886,495	-				-1.5
3,886,507	-				-0.9
3,886,554	-				-0.7
3,886,556	+				-1.1
3,886,561	+				+1.6
3,886,564	-				+0.5
3,886,566	+				+0.1
3,886,566	+				-2.1
3,886,566	+				-0.1
3,886,566	+				-1.6
3,886,566	+				-0.6
3,886,566	+				+1.6
3,886,566	+				-0.2
3,886,566	+				+0.4
3,886,572	+				-0.7
3,886,574	-				-0.7
3,886,574	-				-1.0
3,886,574	-				-0.1
3,886,574	-				+0.3
3,886,574	-				+0.7
3,886,574	-				-0.7
3,886,574	-				+0.5
3,886,574	-				-0.1
3,886,574	-				-1.8
3,886,574	-				+0.0
3,886,574	-				-1.7
3,886,576	+				-1.4
3,886,576	+				+0.0
3,886,576	+				+0.0
3,886,576	+				-0.1
3,886,584	-		GFF3847	0.10	+1.4
3,886,584	-		GFF3847	0.10	-2.8
3,886,584	-		GFF3847	0.10	-1.4
3,886,584	-		GFF3847	0.10	+0.4
3,886,629	+		GFF3847	0.15	-1.1
3,886,629	+		GFF3847	0.15	-1.1
3,886,654	+		GFF3847	0.17	-1.1
3,886,654	+		GFF3847	0.17	-0.5
3,886,661	-		GFF3847	0.18	+0.2
3,886,662	-		GFF3847	0.18	-1.6
3,886,662	-		GFF3847	0.18	-1.6
3,886,666	+		GFF3847	0.18	+1.3
3,886,674	-		GFF3847	0.19	-0.5
3,886,717	+		GFF3847	0.23	+0.0
3,886,741	-		GFF3847	0.25	+0.4
3,886,775	+		GFF3847	0.29	-1.0
3,886,780	+		GFF3847	0.29	+0.7
3,886,788	-		GFF3847	0.30	-1.1
3,886,828	+		GFF3847	0.34	+0.8
3,886,828	+		GFF3847	0.34	-1.5
3,886,828	+		GFF3847	0.34	-0.5
3,886,844	-		GFF3847	0.35	+0.4
3,886,846	+		GFF3847	0.35	+0.6
3,886,852	+		GFF3847	0.36	+0.2
3,886,854	-		GFF3847	0.36	-0.2
3,886,854	-		GFF3847	0.36	+0.2
3,886,854	-		GFF3847	0.36	-0.8
3,886,878	+		GFF3847	0.38	+0.4
3,886,888	+		GFF3847	0.39	-0.1
3,886,888	+		GFF3847	0.39	-1.4
3,886,888	+		GFF3847	0.39	-0.6
3,886,888	+		GFF3847	0.39	+0.5
3,886,888	+		GFF3847	0.39	-0.7
3,886,896	-		GFF3847	0.40	-1.4
3,886,896	-		GFF3847	0.40	-1.5
3,886,896	-		GFF3847	0.40	+0.7
3,886,896	-		GFF3847	0.40	+0.1
3,886,896	-		GFF3847	0.40	-0.7
3,886,896	-		GFF3847	0.40	-0.8
3,886,896	-		GFF3847	0.40	-0.7
3,886,896	-		GFF3847	0.40	+0.6
3,886,896	-		GFF3847	0.40	+0.4
3,886,896	-		GFF3847	0.40	-0.6
3,886,914	+		GFF3847	0.42	-0.3
3,886,919	+		GFF3847	0.42	-0.7
3,886,924	+		GFF3847	0.43	-1.1
3,886,924	+		GFF3847	0.43	+1.0
3,886,926	+		GFF3847	0.43	+0.8
3,886,927	-		GFF3847	0.43	+0.9
3,886,927	-		GFF3847	0.43	+0.2
3,886,930	+		GFF3847	0.43	+1.0
3,886,934	-		GFF3847	0.44	-0.1
3,886,934	-		GFF3847	0.44	-0.9
3,886,956	-		GFF3847	0.46	-0.1
3,886,970	-		GFF3847	0.47	-0.5
3,886,970	-		GFF3847	0.47	-1.0
3,886,990	-		GFF3847	0.49	-0.7
3,887,015	-		GFF3847	0.52	-2.5
3,887,027	+		GFF3847	0.53	-0.7
3,887,055	+		GFF3847	0.55	+0.0
3,887,055	+		GFF3847	0.55	-1.4
3,887,055	+		GFF3847	0.55	-0.6
3,887,055	+		GFF3847	0.55	+1.2
3,887,055	+		GFF3847	0.55	-0.1
3,887,055	+		GFF3847	0.55	+0.5
3,887,055	+		GFF3847	0.55	-2.1
3,887,055	+		GFF3847	0.55	+0.4
3,887,055	+		GFF3847	0.55	-2.1
3,887,055	+		GFF3847	0.55	+0.3
3,887,055	+		GFF3847	0.55	+0.8
3,887,063	-		GFF3847	0.56	-0.2
3,887,063	-		GFF3847	0.56	+0.1
3,887,063	-		GFF3847	0.56	+0.7
3,887,063	-		GFF3847	0.56	+0.1
3,887,063	-		GFF3847	0.56	-0.9
3,887,063	-		GFF3847	0.56	-1.2
3,887,063	-		GFF3847	0.56	+0.3
3,887,063	-		GFF3847	0.56	+0.5
3,887,063	-		GFF3847	0.56	-0.9
3,887,063	-		GFF3847	0.56	-0.1
3,887,092	+		GFF3847	0.59	-0.2
3,887,092	+		GFF3847	0.59	+1.5
3,887,100	-		GFF3847	0.60	-1.3
3,887,100	-		GFF3847	0.60	+0.9
3,887,100	-		GFF3847	0.60	-1.7
3,887,100	-		GFF3847	0.60	+0.3
3,887,100	-		GFF3847	0.60	-0.3
3,887,104	+		GFF3847	0.60	+0.3
3,887,107	-		GFF3847	0.60	-2.5
3,887,112	-		GFF3847	0.61	-0.5
3,887,113	+		GFF3847	0.61	-0.1
3,887,118	+		GFF3847	0.61	+1.5
3,887,118	+		GFF3847	0.61	-0.6
3,887,121	-		GFF3847	0.62	+0.9
3,887,121	-		GFF3847	0.62	-0.1
3,887,126	-		GFF3847	0.62	-0.2
3,887,126	-		GFF3847	0.62	+0.5
3,887,139	-		GFF3847	0.63	-1.4
3,887,145	-		GFF3847	0.64	+1.6
3,887,150	-		GFF3847	0.64	-1.1
3,887,151	+		GFF3847	0.65	+0.6
3,887,170	-		GFF3847	0.66	+0.7
3,887,171	+		GFF3847	0.66	-1.0
3,887,171	+		GFF3847	0.66	-0.2
3,887,175	-		GFF3847	0.67	-0.2
3,887,217	+		GFF3847	0.71	-0.8
3,887,228	+		GFF3847	0.72	-2.3
3,887,269	+		GFF3847	0.76	-0.5
3,887,269	+		GFF3847	0.76	-0.1
3,887,295	-		GFF3847	0.78	-1.7
3,887,298	+		GFF3847	0.79	+0.1
3,887,318	+		GFF3847	0.81	-2.5
3,887,325	+		GFF3847	0.81	-0.3
3,887,329	+		GFF3847	0.82	+0.1
3,887,329	+		GFF3847	0.82	+1.1
3,887,329	+		GFF3847	0.82	-1.1
3,887,329	+		GFF3847	0.82	+0.3
3,887,337	-		GFF3847	0.82	-1.2
3,887,337	-		GFF3847	0.82	+1.3
3,887,337	-		GFF3847	0.82	-0.7
3,887,337	-		GFF3847	0.82	-1.8
3,887,338	-		GFF3847	0.82	-0.5
3,887,343	-		GFF3847	0.83	+1.4
3,887,393	+		GFF3847	0.88	-0.6
3,887,400	-		GFF3847	0.88	-1.2
3,887,409	+		GFF3847	0.89	-0.2
3,887,411	+		GFF3847	0.89	+0.2
3,887,449	+				-0.1
3,887,449	-				+0.3
3,887,451	+				+0.2
3,887,457	-				+1.6
3,887,459	-				-1.1
3,887,463	+				-0.3
3,887,474	+				+0.3
3,887,477	-				-1.2
3,887,484	+				-0.5
3,887,484	+				+1.0
3,887,492	-				+1.0
3,887,492	-				+0.6
3,887,492	-				-1.3
3,887,496	+				-1.6
3,887,502	-				-0.7
3,887,524	+				-2.3
3,887,524	+				-0.7
3,887,574	+				-1.3
3,887,582	-				+0.4
3,887,589	-				-1.7
3,887,589	-				-0.4
3,887,589	-				+0.5
3,887,615	-				+0.1
3,887,649	+				-1.6
3,887,657	-				+1.3
3,887,661	+				-0.9
3,887,661	+				-1.1
3,887,662	+				-0.1
3,887,669	-				-0.0
3,887,669	-				+0.3
3,887,669	-				-2.5
3,887,671	+				-1.6
3,887,679	-				+0.8
3,887,679	-				-0.4
3,887,680	+				+0.3
3,887,702	-				+0.1
3,887,719	-				-1.0
3,887,724	+				-0.2
3,887,724	+				-1.1
3,887,724	+				+0.6
3,887,724	+				-0.3
3,887,724	+				-0.2
3,887,724	+				-1.3
3,887,724	+				-0.5
3,887,724	+				-0.3
3,887,724	+				-1.1
3,887,724	+				-1.1
3,887,724	+				+0.5
3,887,724	+				-0.1
3,887,724	+				-0.8
3,887,724	+				+0.8
3,887,724	+				-1.9
3,887,724	+				-0.8
3,887,724	+				+0.5
3,887,724	+				-1.5
3,887,724	+				-0.1
3,887,724	+				-1.3
3,887,724	+				+0.4
3,887,724	+				-1.7
3,887,724	+				-1.7
3,887,732	-				+0.2
3,887,732	-				-0.4
3,887,732	-				+0.6
3,887,732	-				-0.8
3,887,732	-				-2.4
3,887,732	-				-0.1
3,887,732	-				+0.8
3,887,732	-				-0.1
3,887,732	-				-2.6
3,887,732	-				-0.4
3,887,732	-				-0.2
3,887,732	-				-0.9
3,887,732	-				+0.3
3,887,732	-				-0.4
3,887,734	+				+0.8
3,887,734	+				-0.6
3,887,747	-				-0.2
3,887,749	+				+0.6
3,887,754	+				-1.1
3,887,768	+				-0.4
3,887,776	-				+0.0
3,887,776	-				-1.1
3,887,776	-				+1.0
3,887,776	-				+0.6
3,887,795	+		GFF3848	0.11	+0.1
3,887,880	+		GFF3848	0.24	-0.4
3,887,880	+		GFF3848	0.24	-1.5
3,887,880	+		GFF3848	0.24	-1.7
3,887,883	-		GFF3848	0.25	-2.7
3,887,883	-		GFF3848	0.25	-0.2
3,887,883	-		GFF3848	0.25	+0.1
3,887,885	+		GFF3848	0.25	+0.1
3,887,885	+		GFF3848	0.25	+0.0
3,887,888	-		GFF3848	0.25	+0.0
3,887,888	-		GFF3848	0.25	-0.7
3,887,888	-		GFF3848	0.25	-0.1
3,887,888	-		GFF3848	0.25	+0.5
3,887,888	-		GFF3848	0.25	-0.2
3,887,893	-		GFF3848	0.26	-0.3
3,887,893	-		GFF3848	0.26	-2.1
3,887,906	+		GFF3848	0.28	-0.5
3,887,926	-		GFF3848	0.31	+0.3
3,887,941	-		GFF3848	0.33	-1.5
3,887,946	+		GFF3848	0.34	-1.6
3,887,946	+		GFF3848	0.34	-1.4
3,887,952	+		GFF3848	0.35	+0.6
3,887,960	-		GFF3848	0.36	-0.3
3,887,960	-		GFF3848	0.36	-0.4
3,887,962	+		GFF3848	0.37	+0.3
3,887,976	+		GFF3848	0.39	+1.9
3,888,017	-		GFF3848	0.45	-1.0
3,888,022	-		GFF3848	0.46	-0.7
3,888,022	-		GFF3848	0.46	-1.3
3,888,050	-		GFF3848	0.50	-1.1
3,888,056	+		GFF3848	0.51	-0.1
3,888,063	+		GFF3848	0.52	-1.8
3,888,076	-		GFF3848	0.54	+0.2
3,888,079	-		GFF3848	0.55	+0.5
3,888,092	-		GFF3848	0.57	+0.4
3,888,102	-		GFF3848	0.58	+0.1
3,888,105	-		GFF3848	0.59	-0.2
3,888,107	+		GFF3848	0.59	-2.6
3,888,115	+		GFF3848	0.60	-2.1
3,888,135	-		GFF3848	0.63	-0.1
3,888,146	+		GFF3848	0.65	+1.5
3,888,167	-		GFF3848	0.68	+0.1
3,888,167	-		GFF3848	0.68	-1.6
3,888,167	-		GFF3848	0.68	+0.5
3,888,173	+		GFF3848	0.69	-0.1
3,888,178	+		GFF3848	0.70	+1.0
3,888,178	+		GFF3848	0.70	-1.3
3,888,178	+		GFF3848	0.70	+0.7
3,888,178	+		GFF3848	0.70	-1.2
3,888,181	-		GFF3848	0.70	-0.2
3,888,181	-		GFF3848	0.70	-2.0
3,888,181	-		GFF3848	0.70	-0.3
3,888,225	+		GFF3848	0.77	-0.8
3,888,225	+		GFF3848	0.77	+0.6
3,888,227	-		GFF3848	0.77	-0.1
3,888,233	-		GFF3848	0.78	+0.8
3,888,248	+		GFF3848	0.81	-0.4
3,888,278	-		GFF3848	0.85	-1.0
3,888,280	+		GFF3848	0.86	+0.7
3,888,351	-				-2.8
3,888,354	+				+0.2
3,888,354	+				+0.2
3,888,354	+				-0.4
3,888,362	-				+0.2
3,888,362	-				-1.3
3,888,362	-				-0.1
3,888,362	-				-0.2
3,888,362	-				-1.5
3,888,362	-				+0.3
3,888,377	+				-2.0
3,888,377	-				+0.7
3,888,385	-				-1.2
3,888,418	-				+0.6
3,888,418	-				-2.9
3,888,431	-				-2.2
3,888,485	+				+0.2
3,888,499	+				+0.2
3,888,507	-				+0.3