Strain Fitness in Sphingobium sp. HT1-2 around GFF378

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF375 and GFF376 overlap by 4 nucleotidesGFF376 and GFF377 are separated by 7 nucleotidesGFF377 and GFF378 are separated by 27 nucleotidesGFF378 and GFF379 are separated by 20 nucleotidesGFF379 and GFF380 overlap by 4 nucleotides GFF375 - Peptidoglycan lipid II flippase MurJ, at 367,732 to 369,306 GFF375 GFF376 - hypothetical protein, at 369,303 to 369,422 GFF376 GFF377 - Protein-export protein SecB (maintains pre-export unfolded state), at 369,430 to 369,933 GFF377 GFF378 - hypothetical protein, at 369,961 to 370,092 GFF378 GFF379 - Tim44-like domain protein, at 370,113 to 370,811 GFF379 GFF380 - Membrane-bound lytic murein transglycosylase A, at 370,808 to 372,073 GFF380 Position (kb) 369 370 371Strain fitness (log2 ratio) -2 -1 0 1 2at 369.308 kb on - strandat 369.326 kb on + strand, within GFF376at 369.333 kb on + strand, within GFF376at 369.339 kb on + strand, within GFF376at 369.339 kb on + strand, within GFF376at 369.339 kb on + strand, within GFF376at 369.339 kb on + strand, within GFF376at 369.339 kb on + strand, within GFF376at 369.339 kb on + strand, within GFF376at 369.339 kb on + strand, within GFF376at 369.339 kb on + strand, within GFF376at 369.339 kb on + strand, within GFF376at 369.339 kb on + strand, within GFF376at 369.339 kb on + strand, within GFF376at 369.344 kb on + strand, within GFF376at 369.344 kb on + strand, within GFF376at 369.344 kb on + strand, within GFF376at 369.344 kb on + strand, within GFF376at 369.344 kb on + strand, within GFF376at 369.347 kb on - strand, within GFF376at 369.347 kb on - strand, within GFF376at 369.347 kb on - strand, within GFF376at 369.347 kb on - strand, within GFF376at 369.347 kb on - strand, within GFF376at 369.347 kb on - strand, within GFF376at 369.347 kb on - strand, within GFF376at 369.347 kb on - strand, within GFF376at 369.347 kb on - strand, within GFF376at 369.347 kb on - strand, within GFF376at 369.347 kb on - strand, within GFF376at 369.347 kb on - strand, within GFF376at 369.347 kb on - strand, within GFF376at 369.347 kb on - strand, within GFF376at 369.347 kb on - strand, within GFF376at 369.352 kb on - strand, within GFF376at 369.352 kb on - strand, within GFF376at 369.352 kb on - strand, within GFF376at 369.352 kb on - strand, within GFF376at 369.352 kb on - strand, within GFF376at 369.352 kb on - strand, within GFF376at 369.354 kb on - strand, within GFF376at 369.362 kb on + strand, within GFF376at 369.377 kb on - strand, within GFF376at 369.385 kb on + strand, within GFF376at 369.385 kb on + strand, within GFF376at 369.393 kb on - strand, within GFF376at 369.393 kb on - strand, within GFF376at 369.395 kb on + strand, within GFF376at 369.395 kb on + strand, within GFF376at 369.395 kb on + strand, within GFF376at 369.395 kb on + strand, within GFF376at 369.395 kb on + strand, within GFF376at 369.395 kb on + strand, within GFF376at 369.403 kb on - strand, within GFF376at 369.415 kb on + strandat 369.436 kb on - strandat 369.436 kb on - strandat 369.439 kb on + strandat 369.458 kb on - strandat 369.460 kb on + strandat 369.471 kb on + strandat 369.479 kb on - strandat 369.479 kb on - strandat 369.480 kb on + strandat 369.480 kb on + strandat 369.480 kb on + strandat 369.480 kb on + strandat 369.480 kb on + strandat 369.480 kb on + strandat 369.488 kb on - strand, within GFF377at 369.488 kb on - strand, within GFF377at 369.488 kb on - strand, within GFF377at 369.503 kb on - strand, within GFF377at 369.522 kb on - strand, within GFF377at 369.561 kb on - strand, within GFF377at 369.561 kb on - strand, within GFF377at 369.561 kb on - strand, within GFF377at 369.561 kb on - strand, within GFF377at 369.574 kb on + strand, within GFF377at 369.603 kb on + strand, within GFF377at 369.610 kb on + strand, within GFF377at 369.611 kb on - strand, within GFF377at 369.817 kb on - strand, within GFF377at 369.945 kb on - strandat 369.945 kb on - strandat 369.945 kb on - strandat 369.945 kb on - strandat 369.952 kb on - strandat 369.979 kb on - strand, within GFF378at 369.979 kb on - strand, within GFF378at 369.979 kb on - strand, within GFF378at 369.988 kb on + strand, within GFF378at 369.996 kb on - strand, within GFF378at 370.024 kb on + strand, within GFF378at 370.024 kb on + strand, within GFF378at 370.032 kb on - strand, within GFF378at 370.032 kb on - strand, within GFF378at 370.039 kb on + strand, within GFF378at 370.039 kb on + strand, within GFF378at 370.065 kb on + strand, within GFF378at 370.070 kb on + strand, within GFF378at 370.070 kb on + strand, within GFF378at 370.078 kb on - strand, within GFF378at 370.078 kb on - strand, within GFF378at 370.078 kb on - strand, within GFF378at 370.078 kb on - strand, within GFF378at 370.096 kb on + strandat 370.108 kb on + strandat 370.141 kb on + strandat 370.143 kb on + strandat 370.143 kb on + strandat 370.143 kb on + strandat 370.143 kb on + strandat 370.143 kb on + strandat 370.173 kb on + strandat 370.218 kb on - strand, within GFF379at 370.241 kb on + strand, within GFF379at 370.244 kb on + strand, within GFF379at 370.288 kb on + strand, within GFF379at 370.303 kb on - strand, within GFF379at 370.376 kb on - strand, within GFF379at 370.385 kb on + strand, within GFF379at 370.385 kb on + strand, within GFF379at 370.393 kb on - strand, within GFF379at 370.393 kb on - strand, within GFF379at 370.485 kb on + strand, within GFF379at 370.493 kb on - strand, within GFF379at 370.504 kb on + strand, within GFF379at 370.507 kb on - strand, within GFF379at 370.512 kb on + strand, within GFF379at 370.514 kb on + strand, within GFF379at 370.557 kb on + strand, within GFF379at 370.737 kb on + strand, within GFF379at 370.770 kb on + strandat 370.806 kb on + strandat 370.806 kb on + strandat 370.806 kb on + strandat 370.806 kb on + strandat 370.814 kb on - strandat 370.814 kb on - strandat 370.814 kb on - strandat 370.814 kb on - strandat 370.872 kb on + strandat 370.896 kb on + strandat 370.904 kb on - strandat 370.909 kb on - strandat 370.946 kb on + strand, within GFF380at 370.946 kb on + strand, within GFF380at 370.962 kb on + strand, within GFF380at 370.962 kb on + strand, within GFF380at 370.970 kb on - strand, within GFF380at 370.970 kb on - strand, within GFF380at 370.970 kb on - strand, within GFF380at 370.972 kb on + strand, within GFF380at 371.013 kb on - strand, within GFF380at 371.015 kb on + strand, within GFF380at 371.015 kb on + strand, within GFF380at 371.015 kb on + strand, within GFF380at 371.020 kb on + strand, within GFF380at 371.023 kb on - strand, within GFF380at 371.028 kb on + strand, within GFF380at 371.075 kb on - strand, within GFF380at 371.076 kb on + strand, within GFF380at 371.084 kb on - strand, within GFF380

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with D-Glucose and Ammonium Sulfate
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369,308 - +0.1
369,326 + GFF376 0.19 -0.2
369,333 + GFF376 0.25 -1.2
369,339 + GFF376 0.30 +1.8
369,339 + GFF376 0.30 -0.9
369,339 + GFF376 0.30 +0.0
369,339 + GFF376 0.30 +0.8
369,339 + GFF376 0.30 +0.1
369,339 + GFF376 0.30 +0.2
369,339 + GFF376 0.30 -0.1
369,339 + GFF376 0.30 -0.4
369,339 + GFF376 0.30 +1.0
369,339 + GFF376 0.30 -0.9
369,339 + GFF376 0.30 +0.2
369,344 + GFF376 0.34 -0.8
369,344 + GFF376 0.34 -0.0
369,344 + GFF376 0.34 +1.7
369,344 + GFF376 0.34 +0.1
369,344 + GFF376 0.34 -1.8
369,347 - GFF376 0.37 -0.6
369,347 - GFF376 0.37 -0.8
369,347 - GFF376 0.37 -0.4
369,347 - GFF376 0.37 -1.1
369,347 - GFF376 0.37 +0.2
369,347 - GFF376 0.37 +0.1
369,347 - GFF376 0.37 -0.7
369,347 - GFF376 0.37 +0.0
369,347 - GFF376 0.37 +1.0
369,347 - GFF376 0.37 -0.9
369,347 - GFF376 0.37 +0.7
369,347 - GFF376 0.37 -0.0
369,347 - GFF376 0.37 -0.0
369,347 - GFF376 0.37 +0.6
369,347 - GFF376 0.37 -0.8
369,352 - GFF376 0.41 +0.9
369,352 - GFF376 0.41 -1.2
369,352 - GFF376 0.41 -1.7
369,352 - GFF376 0.41 +0.3
369,352 - GFF376 0.41 -0.4
369,352 - GFF376 0.41 +0.6
369,354 - GFF376 0.42 -1.2
369,362 + GFF376 0.49 -2.4
369,377 - GFF376 0.62 +0.1
369,385 + GFF376 0.68 -0.6
369,385 + GFF376 0.68 -1.3
369,393 - GFF376 0.75 +1.3
369,393 - GFF376 0.75 -1.7
369,395 + GFF376 0.77 +0.6
369,395 + GFF376 0.77 -1.2
369,395 + GFF376 0.77 -2.3
369,395 + GFF376 0.77 +0.3
369,395 + GFF376 0.77 +0.7
369,395 + GFF376 0.77 -1.3
369,403 - GFF376 0.83 +0.4
369,415 + +0.1
369,436 - -0.4
369,436 - +0.2
369,439 + -0.2
369,458 - +1.3
369,460 + -1.0
369,471 + +0.5
369,479 - -1.4
369,479 - -0.9
369,480 + -2.3
369,480 + +0.3
369,480 + +1.3
369,480 + +0.7
369,480 + -0.6
369,480 + -0.0
369,488 - GFF377 0.12 -0.3
369,488 - GFF377 0.12 -0.9
369,488 - GFF377 0.12 -0.0
369,503 - GFF377 0.14 -1.3
369,522 - GFF377 0.18 +0.1
369,561 - GFF377 0.26 -0.4
369,561 - GFF377 0.26 -0.5
369,561 - GFF377 0.26 +0.3
369,561 - GFF377 0.26 +1.2
369,574 + GFF377 0.29 -0.2
369,603 + GFF377 0.34 -1.2
369,610 + GFF377 0.36 +1.1
369,611 - GFF377 0.36 +0.3
369,817 - GFF377 0.77 -1.9
369,945 - -1.3
369,945 - -0.3
369,945 - +2.0
369,945 - +0.7
369,952 - +0.4
369,979 - GFF378 0.14 +0.4
369,979 - GFF378 0.14 +0.3
369,979 - GFF378 0.14 +0.7
369,988 + GFF378 0.20 +1.2
369,996 - GFF378 0.27 +0.1
370,024 + GFF378 0.48 -0.9
370,024 + GFF378 0.48 +0.3
370,032 - GFF378 0.54 -0.0
370,032 - GFF378 0.54 -1.4
370,039 + GFF378 0.59 +0.0
370,039 + GFF378 0.59 +1.1
370,065 + GFF378 0.79 +1.0
370,070 + GFF378 0.83 -2.1
370,070 + GFF378 0.83 -0.5
370,078 - GFF378 0.89 -0.9
370,078 - GFF378 0.89 -0.8
370,078 - GFF378 0.89 -1.6
370,078 - GFF378 0.89 -0.4
370,096 + -0.1
370,108 + +0.5
370,141 + -0.7
370,143 + +1.0
370,143 + -0.4
370,143 + -0.3
370,143 + +1.0
370,143 + +0.7
370,173 + +0.1
370,218 - GFF379 0.15 +0.2
370,241 + GFF379 0.18 -0.8
370,244 + GFF379 0.19 +1.0
370,288 + GFF379 0.25 -1.2
370,303 - GFF379 0.27 -0.6
370,376 - GFF379 0.38 -1.3
370,385 + GFF379 0.39 +1.8
370,385 + GFF379 0.39 +0.7
370,393 - GFF379 0.40 -2.5
370,393 - GFF379 0.40 -1.8
370,485 + GFF379 0.53 +2.0
370,493 - GFF379 0.54 -0.3
370,504 + GFF379 0.56 +0.2
370,507 - GFF379 0.56 -1.2
370,512 + GFF379 0.57 -0.8
370,514 + GFF379 0.57 +0.4
370,557 + GFF379 0.64 -1.6
370,737 + GFF379 0.89 -0.8
370,770 + +1.3
370,806 + -0.4
370,806 + -1.0
370,806 + +1.8
370,806 + -1.5
370,814 - -0.5
370,814 - -1.5
370,814 - +0.6
370,814 - -1.1
370,872 + +0.7
370,896 + -0.3
370,904 - +0.3
370,909 - -0.6
370,946 + GFF380 0.11 -1.0
370,946 + GFF380 0.11 -2.4
370,962 + GFF380 0.12 -0.2
370,962 + GFF380 0.12 -2.6
370,970 - GFF380 0.13 +1.0
370,970 - GFF380 0.13 -1.4
370,970 - GFF380 0.13 -0.5
370,972 + GFF380 0.13 +1.0
371,013 - GFF380 0.16 -1.3
371,015 + GFF380 0.16 +1.3
371,015 + GFF380 0.16 +0.3
371,015 + GFF380 0.16 -1.8
371,020 + GFF380 0.17 -1.6
371,023 - GFF380 0.17 -0.2
371,028 + GFF380 0.17 +0.1
371,075 - GFF380 0.21 -1.8
371,076 + GFF380 0.21 -1.3
371,084 - GFF380 0.22 -0.8

Or see this region's nucleotide sequence