Strain Fitness in Sphingobium sp. HT1-2 around GFF373

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF372 and GFF373 are separated by 138 nucleotidesGFF373 and GFF374 are separated by 210 nucleotides GFF372 - hypothetical protein, at 364,468 to 365,709 GFF372 GFF373 - hypothetical protein, at 365,848 to 366,495 GFF373 GFF374 - Tryptophanyl-tRNA synthetase (EC 6.1.1.2), at 366,706 to 367,710 GFF374 Position (kb) 365 366 367Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 364.857 kb on + strand, within GFF372at 364.865 kb on - strand, within GFF372at 364.953 kb on - strand, within GFF372at 364.953 kb on - strand, within GFF372at 364.958 kb on + strand, within GFF372at 364.966 kb on - strand, within GFF372at 364.988 kb on + strand, within GFF372at 364.988 kb on + strand, within GFF372at 364.988 kb on + strand, within GFF372at 364.988 kb on + strand, within GFF372at 364.991 kb on - strand, within GFF372at 364.993 kb on + strand, within GFF372at 364.996 kb on - strand, within GFF372at 365.001 kb on - strand, within GFF372at 365.001 kb on - strand, within GFF372at 365.011 kb on - strand, within GFF372at 365.036 kb on + strand, within GFF372at 365.044 kb on - strand, within GFF372at 365.049 kb on - strand, within GFF372at 365.067 kb on + strand, within GFF372at 365.070 kb on - strand, within GFF372at 365.070 kb on - strand, within GFF372at 365.075 kb on - strand, within GFF372at 365.087 kb on + strand, within GFF372at 365.091 kb on + strand, within GFF372at 365.091 kb on + strand, within GFF372at 365.091 kb on + strand, within GFF372at 365.099 kb on - strand, within GFF372at 365.099 kb on - strand, within GFF372at 365.099 kb on - strand, within GFF372at 365.106 kb on - strand, within GFF372at 365.127 kb on + strand, within GFF372at 365.128 kb on - strand, within GFF372at 365.130 kb on - strand, within GFF372at 365.146 kb on + strand, within GFF372at 365.153 kb on + strand, within GFF372at 365.153 kb on + strand, within GFF372at 365.153 kb on + strand, within GFF372at 365.161 kb on - strand, within GFF372at 365.161 kb on - strand, within GFF372at 365.161 kb on - strand, within GFF372at 365.161 kb on - strand, within GFF372at 365.161 kb on - strand, within GFF372at 365.161 kb on - strand, within GFF372at 365.168 kb on + strand, within GFF372at 365.197 kb on - strand, within GFF372at 365.199 kb on + strand, within GFF372at 365.207 kb on - strand, within GFF372at 365.220 kb on - strand, within GFF372at 365.224 kb on + strand, within GFF372at 365.224 kb on + strand, within GFF372at 365.225 kb on - strand, within GFF372at 365.232 kb on - strand, within GFF372at 365.232 kb on - strand, within GFF372at 365.232 kb on - strand, within GFF372at 365.236 kb on + strand, within GFF372at 365.242 kb on + strand, within GFF372at 365.265 kb on - strand, within GFF372at 365.281 kb on - strand, within GFF372at 365.298 kb on - strand, within GFF372at 365.303 kb on - strand, within GFF372at 365.319 kb on - strand, within GFF372at 365.319 kb on - strand, within GFF372at 365.325 kb on + strand, within GFF372at 365.325 kb on + strand, within GFF372at 365.325 kb on + strand, within GFF372at 365.350 kb on - strand, within GFF372at 365.352 kb on + strand, within GFF372at 365.365 kb on - strand, within GFF372at 365.378 kb on + strand, within GFF372at 365.391 kb on - strand, within GFF372at 365.391 kb on - strand, within GFF372at 365.401 kb on - strand, within GFF372at 365.409 kb on + strand, within GFF372at 365.414 kb on + strand, within GFF372at 365.419 kb on + strand, within GFF372at 365.452 kb on - strand, within GFF372at 365.457 kb on + strand, within GFF372at 365.465 kb on - strand, within GFF372at 365.489 kb on + strand, within GFF372at 365.494 kb on + strand, within GFF372at 365.494 kb on + strand, within GFF372at 365.497 kb on - strand, within GFF372at 365.502 kb on - strand, within GFF372at 365.502 kb on - strand, within GFF372at 365.507 kb on - strand, within GFF372at 365.518 kb on + strand, within GFF372at 365.525 kb on + strand, within GFF372at 365.525 kb on + strand, within GFF372at 365.526 kb on - strand, within GFF372at 365.526 kb on - strand, within GFF372at 365.528 kb on + strand, within GFF372at 365.528 kb on + strand, within GFF372at 365.528 kb on + strand, within GFF372at 365.528 kb on + strand, within GFF372at 365.536 kb on - strand, within GFF372at 365.538 kb on + strand, within GFF372at 365.538 kb on + strand, within GFF372at 365.538 kb on + strand, within GFF372at 365.545 kb on + strand, within GFF372at 365.546 kb on - strand, within GFF372at 365.546 kb on - strand, within GFF372at 365.546 kb on - strand, within GFF372at 365.548 kb on - strand, within GFF372at 365.553 kb on - strand, within GFF372at 365.553 kb on - strand, within GFF372at 365.581 kb on - strand, within GFF372at 365.585 kb on + strandat 365.597 kb on + strandat 365.597 kb on + strandat 365.597 kb on + strandat 365.601 kb on + strandat 365.633 kb on + strandat 365.657 kb on - strandat 365.662 kb on + strandat 365.670 kb on - strandat 365.670 kb on - strandat 365.691 kb on + strandat 365.692 kb on - strandat 365.699 kb on - strandat 365.755 kb on + strandat 365.755 kb on + strandat 365.755 kb on + strandat 365.755 kb on + strandat 365.763 kb on - strandat 365.763 kb on - strandat 365.763 kb on - strandat 365.763 kb on - strandat 365.763 kb on - strandat 365.763 kb on - strandat 365.821 kb on + strandat 365.826 kb on + strandat 365.832 kb on + strandat 365.836 kb on + strandat 365.836 kb on + strandat 365.844 kb on + strandat 365.844 kb on - strandat 365.844 kb on - strandat 365.844 kb on - strandat 365.849 kb on - strandat 365.854 kb on - strandat 365.854 kb on - strandat 365.870 kb on + strandat 365.875 kb on + strandat 365.886 kb on - strandat 365.955 kb on - strand, within GFF373at 365.955 kb on - strand, within GFF373at 365.965 kb on + strand, within GFF373at 365.968 kb on - strand, within GFF373at 365.972 kb on + strand, within GFF373at 365.972 kb on + strand, within GFF373at 365.972 kb on + strand, within GFF373at 365.980 kb on - strand, within GFF373at 365.980 kb on - strand, within GFF373at 365.985 kb on - strand, within GFF373at 365.992 kb on - strand, within GFF373at 365.994 kb on + strand, within GFF373at 366.040 kb on + strand, within GFF373at 366.040 kb on + strand, within GFF373at 366.048 kb on - strand, within GFF373at 366.048 kb on - strand, within GFF373at 366.048 kb on - strand, within GFF373at 366.050 kb on + strand, within GFF373at 366.050 kb on + strand, within GFF373at 366.058 kb on - strand, within GFF373at 366.058 kb on - strand, within GFF373at 366.065 kb on + strand, within GFF373at 366.067 kb on + strand, within GFF373at 366.072 kb on + strand, within GFF373at 366.075 kb on - strand, within GFF373at 366.107 kb on + strand, within GFF373at 366.114 kb on - strand, within GFF373at 366.114 kb on - strand, within GFF373at 366.121 kb on - strand, within GFF373at 366.128 kb on - strand, within GFF373at 366.139 kb on + strand, within GFF373at 366.196 kb on + strand, within GFF373at 366.235 kb on - strand, within GFF373at 366.237 kb on + strand, within GFF373at 366.242 kb on + strand, within GFF373at 366.245 kb on - strand, within GFF373at 366.245 kb on - strand, within GFF373at 366.250 kb on - strand, within GFF373at 366.274 kb on + strand, within GFF373at 366.275 kb on + strand, within GFF373at 366.277 kb on - strand, within GFF373at 366.279 kb on + strand, within GFF373at 366.279 kb on + strand, within GFF373at 366.280 kb on + strand, within GFF373at 366.288 kb on - strand, within GFF373at 366.288 kb on - strand, within GFF373at 366.288 kb on - strand, within GFF373at 366.293 kb on - strand, within GFF373at 366.358 kb on + strand, within GFF373at 366.359 kb on + strand, within GFF373at 366.359 kb on + strand, within GFF373at 366.364 kb on + strand, within GFF373at 366.364 kb on + strand, within GFF373at 366.364 kb on + strand, within GFF373at 366.364 kb on + strand, within GFF373at 366.367 kb on - strand, within GFF373at 366.367 kb on - strand, within GFF373at 366.369 kb on + strand, within GFF373at 366.369 kb on + strand, within GFF373at 366.369 kb on + strand, within GFF373at 366.372 kb on - strand, within GFF373at 366.372 kb on - strand, within GFF373at 366.372 kb on - strand, within GFF373at 366.372 kb on - strand, within GFF373at 366.372 kb on - strand, within GFF373at 366.372 kb on - strand, within GFF373at 366.372 kb on - strand, within GFF373at 366.377 kb on - strand, within GFF373at 366.377 kb on - strand, within GFF373at 366.379 kb on + strand, within GFF373at 366.418 kb on - strand, within GFF373at 366.418 kb on - strand, within GFF373at 366.420 kb on + strand, within GFF373at 366.428 kb on + strand, within GFF373at 366.436 kb on - strandat 366.443 kb on + strandat 366.451 kb on - strandat 366.476 kb on + strandat 366.524 kb on + strandat 366.532 kb on - strandat 366.535 kb on + strandat 366.550 kb on + strandat 366.569 kb on - strandat 366.603 kb on + strandat 366.605 kb on - strandat 366.611 kb on - strandat 366.611 kb on - strandat 366.612 kb on - strandat 366.626 kb on - strandat 366.637 kb on - strandat 366.637 kb on - strandat 366.663 kb on + strandat 366.664 kb on + strandat 366.664 kb on + strandat 366.673 kb on - strandat 366.679 kb on - strandat 366.697 kb on + strandat 366.697 kb on + strandat 366.697 kb on + strandat 366.699 kb on + strandat 366.704 kb on + strandat 366.705 kb on - strandat 366.705 kb on - strandat 366.705 kb on - strandat 366.705 kb on - strandat 366.705 kb on - strandat 366.705 kb on - strandat 366.707 kb on - strandat 366.707 kb on - strandat 366.712 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with D-Glucose and Ammonium Sulfate
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364,857 + GFF372 0.31 -1.7
364,865 - GFF372 0.32 -0.4
364,953 - GFF372 0.39 -0.8
364,953 - GFF372 0.39 -1.3
364,958 + GFF372 0.39 -0.2
364,966 - GFF372 0.40 +0.1
364,988 + GFF372 0.42 -2.5
364,988 + GFF372 0.42 -1.0
364,988 + GFF372 0.42 +0.7
364,988 + GFF372 0.42 -1.1
364,991 - GFF372 0.42 -0.4
364,993 + GFF372 0.42 +0.5
364,996 - GFF372 0.43 +1.5
365,001 - GFF372 0.43 +0.9
365,001 - GFF372 0.43 -1.3
365,011 - GFF372 0.44 +0.5
365,036 + GFF372 0.46 -0.3
365,044 - GFF372 0.46 -0.6
365,049 - GFF372 0.47 +0.3
365,067 + GFF372 0.48 +0.0
365,070 - GFF372 0.48 -0.9
365,070 - GFF372 0.48 +0.2
365,075 - GFF372 0.49 -2.1
365,087 + GFF372 0.50 +0.3
365,091 + GFF372 0.50 -0.9
365,091 + GFF372 0.50 -1.4
365,091 + GFF372 0.50 +1.4
365,099 - GFF372 0.51 -0.8
365,099 - GFF372 0.51 -0.2
365,099 - GFF372 0.51 -0.1
365,106 - GFF372 0.51 -0.1
365,127 + GFF372 0.53 -0.2
365,128 - GFF372 0.53 +0.2
365,130 - GFF372 0.53 -0.5
365,146 + GFF372 0.55 -0.5
365,153 + GFF372 0.55 +1.0
365,153 + GFF372 0.55 -1.0
365,153 + GFF372 0.55 -0.9
365,161 - GFF372 0.56 -1.0
365,161 - GFF372 0.56 +0.0
365,161 - GFF372 0.56 -1.0
365,161 - GFF372 0.56 -0.8
365,161 - GFF372 0.56 +1.4
365,161 - GFF372 0.56 -0.7
365,168 + GFF372 0.56 -2.2
365,197 - GFF372 0.59 -0.6
365,199 + GFF372 0.59 -1.3
365,207 - GFF372 0.60 -0.5
365,220 - GFF372 0.61 -0.5
365,224 + GFF372 0.61 -0.6
365,224 + GFF372 0.61 -1.5
365,225 - GFF372 0.61 -1.1
365,232 - GFF372 0.62 -1.2
365,232 - GFF372 0.62 +1.0
365,232 - GFF372 0.62 +1.9
365,236 + GFF372 0.62 +0.0
365,242 + GFF372 0.62 -0.3
365,265 - GFF372 0.64 -1.5
365,281 - GFF372 0.65 +0.8
365,298 - GFF372 0.67 -0.8
365,303 - GFF372 0.67 -2.3
365,319 - GFF372 0.69 +1.4
365,319 - GFF372 0.69 -0.0
365,325 + GFF372 0.69 -0.3
365,325 + GFF372 0.69 -1.8
365,325 + GFF372 0.69 -1.4
365,350 - GFF372 0.71 -0.1
365,352 + GFF372 0.71 -1.8
365,365 - GFF372 0.72 -0.1
365,378 + GFF372 0.73 -1.3
365,391 - GFF372 0.74 -0.2
365,391 - GFF372 0.74 -1.4
365,401 - GFF372 0.75 -1.0
365,409 + GFF372 0.76 -1.5
365,414 + GFF372 0.76 +1.3
365,419 + GFF372 0.77 +0.3
365,452 - GFF372 0.79 -1.4
365,457 + GFF372 0.80 -0.1
365,465 - GFF372 0.80 -0.0
365,489 + GFF372 0.82 -0.6
365,494 + GFF372 0.83 +0.8
365,494 + GFF372 0.83 -0.7
365,497 - GFF372 0.83 -0.9
365,502 - GFF372 0.83 -0.4
365,502 - GFF372 0.83 +0.7
365,507 - GFF372 0.84 -0.7
365,518 + GFF372 0.85 -0.7
365,525 + GFF372 0.85 -0.8
365,525 + GFF372 0.85 -2.5
365,526 - GFF372 0.85 +0.4
365,526 - GFF372 0.85 -1.2
365,528 + GFF372 0.85 +0.8
365,528 + GFF372 0.85 +0.8
365,528 + GFF372 0.85 +1.4
365,528 + GFF372 0.85 -0.1
365,536 - GFF372 0.86 -0.2
365,538 + GFF372 0.86 -0.4
365,538 + GFF372 0.86 -0.5
365,538 + GFF372 0.86 +0.7
365,545 + GFF372 0.87 -0.6
365,546 - GFF372 0.87 -1.0
365,546 - GFF372 0.87 -1.3
365,546 - GFF372 0.87 -0.3
365,548 - GFF372 0.87 -2.4
365,553 - GFF372 0.87 -0.2
365,553 - GFF372 0.87 -0.8
365,581 - GFF372 0.90 +0.8
365,585 + -0.3
365,597 + -0.6
365,597 + +0.8
365,597 + -0.6
365,601 + -1.6
365,633 + -2.3
365,657 - +0.4
365,662 + -0.2
365,670 - -0.5
365,670 - -0.4
365,691 + +1.1
365,692 - -0.4
365,699 - +0.2
365,755 + -1.9
365,755 + -1.1
365,755 + -0.3
365,755 + -1.1
365,763 - -1.5
365,763 - +0.8
365,763 - -1.0
365,763 - +0.8
365,763 - +0.9
365,763 - -1.7
365,821 + -1.3
365,826 + -1.2
365,832 + -1.4
365,836 + +0.7
365,836 + +0.2
365,844 + -0.2
365,844 - +1.0
365,844 - -0.2
365,844 - +0.4
365,849 - -1.4
365,854 - -0.1
365,854 - -2.4
365,870 + +0.2
365,875 + -0.2
365,886 - +0.3
365,955 - GFF373 0.17 +0.6
365,955 - GFF373 0.17 +0.2
365,965 + GFF373 0.18 -1.2
365,968 - GFF373 0.19 -0.2
365,972 + GFF373 0.19 +0.1
365,972 + GFF373 0.19 +0.4
365,972 + GFF373 0.19 -0.7
365,980 - GFF373 0.20 +1.0
365,980 - GFF373 0.20 +0.9
365,985 - GFF373 0.21 -0.1
365,992 - GFF373 0.22 +1.6
365,994 + GFF373 0.23 +1.0
366,040 + GFF373 0.30 -0.7
366,040 + GFF373 0.30 -0.5
366,048 - GFF373 0.31 -0.3
366,048 - GFF373 0.31 +2.2
366,048 - GFF373 0.31 -1.6
366,050 + GFF373 0.31 -1.2
366,050 + GFF373 0.31 -0.4
366,058 - GFF373 0.32 -0.8
366,058 - GFF373 0.32 -1.5
366,065 + GFF373 0.33 -0.1
366,067 + GFF373 0.34 -2.2
366,072 + GFF373 0.35 +0.1
366,075 - GFF373 0.35 +0.2
366,107 + GFF373 0.40 -1.8
366,114 - GFF373 0.41 +1.3
366,114 - GFF373 0.41 -0.4
366,121 - GFF373 0.42 +0.3
366,128 - GFF373 0.43 -0.3
366,139 + GFF373 0.45 -1.0
366,196 + GFF373 0.54 -0.0
366,235 - GFF373 0.60 -1.6
366,237 + GFF373 0.60 +0.2
366,242 + GFF373 0.61 -1.6
366,245 - GFF373 0.61 +0.6
366,245 - GFF373 0.61 -2.1
366,250 - GFF373 0.62 -1.4
366,274 + GFF373 0.66 -0.1
366,275 + GFF373 0.66 -1.0
366,277 - GFF373 0.66 -1.1
366,279 + GFF373 0.67 +0.1
366,279 + GFF373 0.67 -1.6
366,280 + GFF373 0.67 -0.5
366,288 - GFF373 0.68 +0.3
366,288 - GFF373 0.68 +0.2
366,288 - GFF373 0.68 -0.7
366,293 - GFF373 0.69 +0.2
366,358 + GFF373 0.79 +1.1
366,359 + GFF373 0.79 -1.6
366,359 + GFF373 0.79 +0.8
366,364 + GFF373 0.80 -0.4
366,364 + GFF373 0.80 -1.9
366,364 + GFF373 0.80 +0.5
366,364 + GFF373 0.80 +0.4
366,367 - GFF373 0.80 -0.5
366,367 - GFF373 0.80 -1.3
366,369 + GFF373 0.80 -0.7
366,369 + GFF373 0.80 +0.4
366,369 + GFF373 0.80 -0.5
366,372 - GFF373 0.81 -1.3
366,372 - GFF373 0.81 -0.6
366,372 - GFF373 0.81 +0.2
366,372 - GFF373 0.81 -1.1
366,372 - GFF373 0.81 +1.2
366,372 - GFF373 0.81 -2.1
366,372 - GFF373 0.81 -1.3
366,377 - GFF373 0.82 -0.3
366,377 - GFF373 0.82 -0.8
366,379 + GFF373 0.82 -2.3
366,418 - GFF373 0.88 -0.5
366,418 - GFF373 0.88 -1.1
366,420 + GFF373 0.88 +0.4
366,428 + GFF373 0.90 -0.4
366,436 - -0.5
366,443 + +0.2
366,451 - -0.1
366,476 + -1.3
366,524 + +0.3
366,532 - -1.0
366,535 + -0.8
366,550 + +0.3
366,569 - -1.5
366,603 + -2.9
366,605 - +0.6
366,611 - -0.9
366,611 - -0.3
366,612 - -1.2
366,626 - -1.1
366,637 - -0.1
366,637 - +0.3
366,663 + -1.5
366,664 + -1.9
366,664 + +1.2
366,673 - -0.1
366,679 - +1.2
366,697 + -0.1
366,697 + +0.7
366,697 + -1.3
366,699 + -0.8
366,704 + +0.7
366,705 - +0.8
366,705 - -1.8
366,705 - +0.2
366,705 - -0.1
366,705 - -0.0
366,705 - -1.8
366,707 - -0.1
366,707 - +0.0
366,712 + -0.7

Or see this region's nucleotide sequence