Strain Fitness in Sphingobium sp. HT1-2 around GFF3724

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,765,633	+		GFF3723	0.52	+0.4
3,765,641	-		GFF3723	0.52	+0.1
3,765,641	-		GFF3723	0.52	+0.2
3,765,641	-		GFF3723	0.52	+0.1
3,765,646	+		GFF3723	0.52	+0.5
3,765,646	+		GFF3723	0.52	+0.9
3,765,655	+		GFF3723	0.53	-0.9
3,765,687	+		GFF3723	0.54	-0.3
3,765,695	-		GFF3723	0.55	+0.4
3,765,728	-		GFF3723	0.57	+1.2
3,765,730	+		GFF3723	0.57	-0.1
3,765,730	+		GFF3723	0.57	-0.4
3,765,730	+		GFF3723	0.57	-1.5
3,765,730	+		GFF3723	0.57	+0.4
3,765,738	-		GFF3723	0.57	-0.8
3,765,738	-		GFF3723	0.57	+1.3
3,765,738	-		GFF3723	0.57	+1.5
3,765,740	+		GFF3723	0.57	-0.2
3,765,740	+		GFF3723	0.57	+0.6
3,765,746	-		GFF3723	0.58	-1.4
3,765,748	-		GFF3723	0.58	-0.5
3,765,748	-		GFF3723	0.58	-1.6
3,765,759	+		GFF3723	0.58	+1.6
3,765,759	+		GFF3723	0.58	-1.4
3,765,759	+		GFF3723	0.58	-2.5
3,765,759	+		GFF3723	0.58	+0.3
3,765,759	+		GFF3723	0.58	-0.1
3,765,763	+		GFF3723	0.59	-0.0
3,765,767	-		GFF3723	0.59	+0.4
3,765,767	-		GFF3723	0.59	-1.2
3,765,767	-		GFF3723	0.59	-0.4
3,765,767	-		GFF3723	0.59	+0.5
3,765,767	-		GFF3723	0.59	+0.1
3,765,767	-		GFF3723	0.59	+1.0
3,765,767	-		GFF3723	0.59	+0.4
3,765,775	+		GFF3723	0.59	+0.2
3,765,778	-		GFF3723	0.59	-0.6
3,765,778	-		GFF3723	0.59	+0.6
3,765,783	-		GFF3723	0.60	+0.2
3,765,795	-		GFF3723	0.60	-2.0
3,765,835	-		GFF3723	0.62	+0.9
3,765,836	+		GFF3723	0.62	-2.4
3,765,860	-		GFF3723	0.64	-0.3
3,765,862	+		GFF3723	0.64	+0.0
3,765,862	-		GFF3723	0.64	+0.3
3,765,867	-		GFF3723	0.64	-0.0
3,765,875	+		GFF3723	0.65	-0.1
3,765,900	-		GFF3723	0.66	+0.6
3,765,953	+		GFF3723	0.69	-1.0
3,765,970	+		GFF3723	0.70	-0.9
3,765,970	+		GFF3723	0.70	+0.6
3,765,970	+		GFF3723	0.70	-0.6
3,765,975	+		GFF3723	0.70	+0.2
3,766,014	+		GFF3723	0.72	-0.2
3,766,047	+		GFF3723	0.74	-0.6
3,766,050	+		GFF3723	0.74	+0.4
3,766,058	-		GFF3723	0.74	-0.3
3,766,080	+		GFF3723	0.76	+1.1
3,766,080	+		GFF3723	0.76	-0.6
3,766,091	+		GFF3723	0.76	+0.6
3,766,132	+		GFF3723	0.78	+0.6
3,766,140	-		GFF3723	0.79	-0.2
3,766,140	-		GFF3723	0.79	-0.1
3,766,140	-		GFF3723	0.79	-0.5
3,766,171	+		GFF3723	0.80	-0.8
3,766,171	+		GFF3723	0.80	-0.5
3,766,171	+		GFF3723	0.80	-0.0
3,766,171	+		GFF3723	0.80	+0.4
3,766,171	+		GFF3723	0.80	+0.3
3,766,173	+		GFF3723	0.81	+2.0
3,766,173	+		GFF3723	0.81	+1.2
3,766,173	+		GFF3723	0.81	-0.8
3,766,173	+		GFF3723	0.81	+1.0
3,766,179	-		GFF3723	0.81	-0.1
3,766,179	-		GFF3723	0.81	-0.8
3,766,179	-		GFF3723	0.81	+0.5
3,766,179	-		GFF3723	0.81	-0.2
3,766,179	-		GFF3723	0.81	-0.7
3,766,179	-		GFF3723	0.81	-2.1
3,766,179	-		GFF3723	0.81	+0.6
3,766,187	+		GFF3723	0.81	+0.8
3,766,187	+		GFF3723	0.81	-2.4
3,766,187	+		GFF3723	0.81	+0.2
3,766,187	+		GFF3723	0.81	+0.7
3,766,195	-		GFF3723	0.82	+0.4
3,766,196	-		GFF3723	0.82	+0.4
3,766,240	+		GFF3723	0.84	-2.0
3,766,241	+		GFF3723	0.84	+0.4
3,766,241	+		GFF3723	0.84	-0.4
3,766,248	+		GFF3723	0.85	-0.7
3,766,248	-		GFF3723	0.85	-0.9
3,766,248	-		GFF3723	0.85	+0.1
3,766,266	+		GFF3723	0.86	-1.9
3,766,266	+		GFF3723	0.86	+0.7
3,766,271	+		GFF3723	0.86	-0.6
3,766,276	+		GFF3723	0.86	-0.3
3,766,276	+		GFF3723	0.86	-0.9
3,766,276	+		GFF3723	0.86	-0.8
3,766,276	+		GFF3723	0.86	-1.6
3,766,276	+		GFF3723	0.86	+1.0
3,766,276	+		GFF3723	0.86	+1.1
3,766,281	+		GFF3723	0.86	-0.1
3,766,284	-		GFF3723	0.87	+0.5
3,766,284	-		GFF3723	0.87	-1.5
3,766,284	-		GFF3723	0.87	+0.8
3,766,284	-		GFF3723	0.87	-0.7
3,766,284	-		GFF3723	0.87	+0.7
3,766,315	+		GFF3723	0.88	-1.0
3,766,331	+		GFF3723	0.89	+1.3
3,766,350	-				-0.2
3,766,353	+				-0.1
3,766,355	+				-1.4
3,766,399	+				-1.5
3,766,414	+				+0.7
3,766,482	-				-0.4
3,766,493	+				-1.4
3,766,494	+				-0.7
3,766,501	-				-0.4
3,766,523	+				-2.3
3,766,523	-				+0.2
3,766,523	-				-1.1
3,766,559	+				+0.7
3,766,586	+				-1.5
3,766,607	+				-0.3
3,766,625	+				-2.6
3,766,650	-				-0.0
3,766,663	+				+0.2
3,766,675	+				-0.5
3,766,681	-				-0.2
3,766,697	+				-0.6
3,766,726	-				+1.3
3,766,733	+				-0.2
3,766,733	+				+0.4
3,766,741	-				+0.5
3,766,741	-				+0.0
3,766,741	-				+0.2
3,766,741	-				-0.0
3,766,745	-				-0.9
3,766,748	+				-0.7
3,766,748	+				-2.4
3,766,748	+				+0.8
3,766,753	+				-1.8
3,766,756	-				-1.6
3,766,770	+		GFF3724	0.10	+1.5
3,766,771	+		GFF3724	0.10	-1.7
3,766,789	-		GFF3724	0.11	-0.2
3,766,798	-		GFF3724	0.12	-2.0
3,766,799	+		GFF3724	0.12	-0.0
3,766,815	-		GFF3724	0.13	-0.4
3,766,816	+		GFF3724	0.13	-0.1
3,766,878	+		GFF3724	0.17	-0.6
3,766,933	+		GFF3724	0.21	+0.4
3,766,938	+		GFF3724	0.22	-2.0
3,766,943	+		GFF3724	0.22	-1.4
3,766,943	+		GFF3724	0.22	-0.4
3,766,943	+		GFF3724	0.22	+1.3
3,766,946	-		GFF3724	0.22	-1.2
3,766,946	-		GFF3724	0.22	-1.2
3,766,946	-		GFF3724	0.22	-2.6
3,766,946	-		GFF3724	0.22	-0.1
3,766,951	-		GFF3724	0.22	+0.3
3,766,951	-		GFF3724	0.22	+0.1
3,766,953	-		GFF3724	0.23	+0.3
3,766,981	+		GFF3724	0.24	+1.0
3,766,986	+		GFF3724	0.25	-0.6
3,766,986	+		GFF3724	0.25	-2.3
3,766,986	+		GFF3724	0.25	-1.6
3,766,986	+		GFF3724	0.25	+0.8
3,766,986	+		GFF3724	0.25	-2.7
3,766,986	+		GFF3724	0.25	+0.0
3,766,986	+		GFF3724	0.25	-0.1
3,766,994	-		GFF3724	0.25	+0.2
3,766,994	-		GFF3724	0.25	+0.5
3,766,994	-		GFF3724	0.25	-1.6
3,766,994	-		GFF3724	0.25	+0.7
3,766,994	-		GFF3724	0.25	-0.3
3,766,994	-		GFF3724	0.25	+0.7
3,766,994	-		GFF3724	0.25	+0.6
3,766,994	-		GFF3724	0.25	-0.4
3,767,015	-		GFF3724	0.27	-1.5
3,767,015	-		GFF3724	0.27	-0.1
3,767,046	+		GFF3724	0.29	-0.9
3,767,046	+		GFF3724	0.29	-0.5
3,767,046	+		GFF3724	0.29	-1.8
3,767,046	+		GFF3724	0.29	-0.6
3,767,046	+		GFF3724	0.29	-1.3
3,767,046	+		GFF3724	0.29	+0.4
3,767,046	+		GFF3724	0.29	-0.3
3,767,046	+		GFF3724	0.29	+0.6
3,767,046	+		GFF3724	0.29	-0.6
3,767,046	+		GFF3724	0.29	+1.0
3,767,046	+		GFF3724	0.29	-2.4
3,767,046	+		GFF3724	0.29	-0.2
3,767,046	+		GFF3724	0.29	-0.6
3,767,046	+		GFF3724	0.29	+0.2
3,767,046	+		GFF3724	0.29	+0.4
3,767,046	+		GFF3724	0.29	-1.3
3,767,046	+		GFF3724	0.29	+0.2
3,767,046	+		GFF3724	0.29	-0.0
3,767,046	+		GFF3724	0.29	-1.3
3,767,046	+		GFF3724	0.29	+0.6
3,767,046	+		GFF3724	0.29	-1.2
3,767,046	+		GFF3724	0.29	-0.7
3,767,046	+		GFF3724	0.29	-0.6
3,767,046	+		GFF3724	0.29	+0.7
3,767,046	+		GFF3724	0.29	-2.5
3,767,046	+		GFF3724	0.29	+1.6
3,767,051	+		GFF3724	0.29	+1.0
3,767,051	+		GFF3724	0.29	+1.1
3,767,051	+		GFF3724	0.29	-0.3
3,767,052	+		GFF3724	0.29	+0.2
3,767,053	-		GFF3724	0.29	-0.3
3,767,054	-		GFF3724	0.29	-0.4
3,767,054	-		GFF3724	0.29	+1.3
3,767,054	-		GFF3724	0.29	+0.6
3,767,054	-		GFF3724	0.29	-0.9
3,767,054	-		GFF3724	0.29	-0.2
3,767,054	-		GFF3724	0.29	+0.0
3,767,054	-		GFF3724	0.29	+0.6
3,767,054	-		GFF3724	0.29	-0.6
3,767,054	-		GFF3724	0.29	-2.0
3,767,054	-		GFF3724	0.29	-2.3
3,767,054	-		GFF3724	0.29	-0.5
3,767,054	-		GFF3724	0.29	-0.2
3,767,057	+		GFF3724	0.30	-0.6
3,767,057	+		GFF3724	0.30	-0.1
3,767,057	+		GFF3724	0.30	-1.0
3,767,057	+		GFF3724	0.30	+0.5
3,767,059	+		GFF3724	0.30	+0.4
3,767,062	+		GFF3724	0.30	-0.8
3,767,062	+		GFF3724	0.30	-0.6
3,767,062	+		GFF3724	0.30	+0.2
3,767,065	-		GFF3724	0.30	-0.8
3,767,065	-		GFF3724	0.30	+1.2
3,767,070	-		GFF3724	0.30	-1.1
3,767,070	-		GFF3724	0.30	+0.4
3,767,072	+		GFF3724	0.31	+1.4
3,767,086	+		GFF3724	0.32	-0.9
3,767,094	-		GFF3724	0.32	+1.3
3,767,105	-		GFF3724	0.33	+0.9
3,767,118	-		GFF3724	0.34	-0.1
3,767,118	-		GFF3724	0.34	-0.2
3,767,124	+		GFF3724	0.34	+1.1
3,767,167	+		GFF3724	0.37	-0.5
3,767,167	+		GFF3724	0.37	-0.1
3,767,167	+		GFF3724	0.37	+0.7
3,767,175	-		GFF3724	0.38	-0.3
3,767,175	-		GFF3724	0.38	-0.3
3,767,175	-		GFF3724	0.38	-0.9
3,767,175	-		GFF3724	0.38	-0.6
3,767,175	-		GFF3724	0.38	-0.1
3,767,175	-		GFF3724	0.38	+0.7
3,767,176	+		GFF3724	0.38	-1.3
3,767,177	-		GFF3724	0.38	+0.4
3,767,194	-		GFF3724	0.39	+0.6
3,767,194	-		GFF3724	0.39	+0.0
3,767,194	-		GFF3724	0.39	+0.8
3,767,194	-		GFF3724	0.39	+0.7
3,767,194	-		GFF3724	0.39	+0.6
3,767,194	-		GFF3724	0.39	-1.4
3,767,199	-		GFF3724	0.39	+2.0
3,767,212	+		GFF3724	0.40	-0.9
3,767,212	+		GFF3724	0.40	+0.5
3,767,220	-		GFF3724	0.41	-1.8
3,767,232	+		GFF3724	0.41	+0.4
3,767,237	+		GFF3724	0.42	-0.3
3,767,240	-		GFF3724	0.42	+2.1
3,767,242	+		GFF3724	0.42	-0.3
3,767,242	+		GFF3724	0.42	+1.0
3,767,245	-		GFF3724	0.42	-0.4
3,767,245	-		GFF3724	0.42	-0.5
3,767,245	-		GFF3724	0.42	-0.6
3,767,256	+		GFF3724	0.43	+1.6
3,767,257	-		GFF3724	0.43	+0.3
3,767,259	-		GFF3724	0.43	-1.1
3,767,265	+		GFF3724	0.44	+0.0
3,767,275	-		GFF3724	0.44	+0.2
3,767,319	-		GFF3724	0.47	+0.6
3,767,334	+		GFF3724	0.48	-1.4
3,767,368	+		GFF3724	0.51	-0.3
3,767,400	+		GFF3724	0.53	-0.3
3,767,403	-		GFF3724	0.53	+0.7
3,767,407	+		GFF3724	0.53	-1.4
3,767,407	+		GFF3724	0.53	-0.6
3,767,423	-		GFF3724	0.54	-1.0
3,767,453	+		GFF3724	0.56	-0.2
3,767,455	-		GFF3724	0.56	-0.0
3,767,462	-		GFF3724	0.57	-0.4
3,767,464	+		GFF3724	0.57	+0.2
3,767,464	+		GFF3724	0.57	+0.3
3,767,472	-		GFF3724	0.58	-1.9
3,767,474	+		GFF3724	0.58	-0.2
3,767,477	-		GFF3724	0.58	-1.0
3,767,480	-		GFF3724	0.58	-1.9
3,767,482	-		GFF3724	0.58	-0.7
3,767,482	-		GFF3724	0.58	+0.2
3,767,483	+		GFF3724	0.58	-1.9
3,767,490	-		GFF3724	0.59	-0.1
3,767,490	-		GFF3724	0.59	-0.4
3,767,490	-		GFF3724	0.59	-0.4
3,767,491	+		GFF3724	0.59	-1.1
3,767,491	+		GFF3724	0.59	-0.1
3,767,491	+		GFF3724	0.59	-0.5
3,767,504	-		GFF3724	0.60	-0.6
3,767,509	-		GFF3724	0.60	-1.1
3,767,523	-		GFF3724	0.61	+0.0
3,767,567	+		GFF3724	0.64	-1.6
3,767,575	-		GFF3724	0.65	-0.7
3,767,614	+		GFF3724	0.67	-0.1
3,767,622	-		GFF3724	0.68	-1.1
3,767,640	+		GFF3724	0.69	+0.9
3,767,699	+		GFF3724	0.73	-0.1
3,767,699	+		GFF3724	0.73	+1.1
3,767,699	+		GFF3724	0.73	-1.0
3,767,699	+		GFF3724	0.73	+1.0
3,767,732	+		GFF3724	0.75	-2.9
3,767,742	+		GFF3724	0.76	+0.6
3,767,742	+		GFF3724	0.76	-2.5
3,767,751	+		GFF3724	0.76	-2.0
3,767,777	+		GFF3724	0.78	+0.4
3,767,778	+		GFF3724	0.78	-1.4
3,767,801	+		GFF3724	0.80	-1.8
3,767,809	-		GFF3724	0.80	+0.5
3,767,809	-		GFF3724	0.80	+0.6
3,767,813	+		GFF3724	0.81	+0.9
3,767,821	-		GFF3724	0.81	-1.6
3,767,821	-		GFF3724	0.81	-1.0
3,767,821	-		GFF3724	0.81	-0.8
3,767,823	+		GFF3724	0.81	-0.8
3,767,831	-		GFF3724	0.82	+1.3
3,767,842	+		GFF3724	0.83	-1.2
3,767,870	+		GFF3724	0.84	+0.5
3,767,894	+		GFF3724	0.86	+0.2
3,767,900	+		GFF3724	0.86	-1.6
3,767,914	+		GFF3724	0.87	-0.5
3,767,914	+		GFF3724	0.87	-0.3
3,767,914	+		GFF3724	0.87	+0.6
3,767,914	+		GFF3724	0.87	-1.2
3,767,914	+		GFF3724	0.87	-1.2
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3,767,922	-		GFF3724	0.88	-0.7
3,767,927	-		GFF3724	0.88	+0.2
3,767,959	-				-0.7
3,767,978	+				+0.2
3,767,986	-				+0.6
3,768,012	+				-1.0
3,768,032	+				+0.2
3,768,037	+				+0.5
3,768,037	+				-2.8
3,768,037	+				-0.8
3,768,039	-				-0.1
3,768,040	-				-0.5
3,768,040	-				-0.3
3,768,040	-				+0.5
3,768,040	-				+0.4
3,768,042	+				-1.7
3,768,042	+				+1.4
3,768,045	-				+0.4
3,768,050	-				-0.0
3,768,050	-				+1.1
3,768,050	-				-0.5
3,768,050	-				-0.2
3,768,053	+				+0.1
3,768,053	+				-1.3
3,768,053	+				+0.0
3,768,061	-				-1.6
3,768,061	-				-0.2
3,768,065	+				-0.4
3,768,065	+				-1.4
3,768,073	-				+0.0
3,768,097	-				-0.2
3,768,099	-				-0.7
3,768,112	-				+0.1
3,768,120	-				-0.6
3,768,120	-				-1.4
3,768,123	-				+0.7
3,768,125	+				-0.4
3,768,128	-				+0.9
3,768,133	-				-0.5
3,768,217	+				-0.1
3,768,224	-				-0.5
3,768,224	-				-0.4
3,768,225	-				-0.6
3,768,225	-				+0.1
3,768,225	-				-0.1
3,768,233	+				-0.5
3,768,233	-				+0.6
3,768,241	+				-1.8
3,768,241	+				-0.2
3,768,241	-				-1.3
3,768,241	-				-0.9
3,768,249	-				-2.1
3,768,249	-				+0.1
3,768,251	+				+0.0
3,768,252	+				-1.4
3,768,274	+				-0.4
3,768,279	+				-1.0
3,768,279	+				+0.6
3,768,286	+				-2.0
3,768,295	-				-0.6
3,768,349	+				-0.3
3,768,355	+				-0.5
3,768,358	-				+0.3
3,768,360	+				+0.1
3,768,360	+				-1.6
3,768,360	+				+1.1
3,768,360	+				-0.5
3,768,360	+				-2.8
3,768,363	-				-1.8
3,768,368	-				-0.4
3,768,368	-				+1.1
3,768,378	+				-0.2
3,768,386	-				-1.5
3,768,396	+				-0.6
3,768,404	-				+1.3
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3,768,410	-		GFF3725	0.10	-1.1
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3,768,469	+		GFF3725	0.17	+0.7
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3,768,515	+		GFF3725	0.23	-0.2
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3,768,515	+		GFF3725	0.23	-1.8
3,768,515	+		GFF3725	0.23	-0.8
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3,768,515	+		GFF3725	0.23	+0.7
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3,768,515	+		GFF3725	0.23	+1.3
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3,768,523	-		GFF3725	0.24	+1.0
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3,768,523	-		GFF3725	0.24	-1.4
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3,768,523	-		GFF3725	0.24	-1.0
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3,768,523	-		GFF3725	0.24	-0.3
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3,768,523	-		GFF3725	0.24	-2.0
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3,768,546	+		GFF3725	0.26	-2.3
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3,768,577	-		GFF3725	0.30	-1.3
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3,768,588	+		GFF3725	0.31	+0.8
3,768,610	-		GFF3725	0.34	-2.8
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3,768,688	+		GFF3725	0.43	+0.4
3,768,688	+		GFF3725	0.43	-1.2
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3,768,765	+		GFF3725	0.52	-1.0
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3,768,775	+		GFF3725	0.53	+0.7
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3,768,810	+		GFF3725	0.57	+1.3
3,768,815	+		GFF3725	0.57	+0.3
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3,768,909	-		GFF3725	0.68	-0.9
3,768,911	+		GFF3725	0.69	-1.1
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3,769,013	-		GFF3725	0.80	-1.8
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3,769,013	-		GFF3725	0.80	+1.3
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3,769,050	+		GFF3725	0.85	-0.7
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3,769,063	-		GFF3725	0.86	+0.1
3,769,083	+		GFF3725	0.89	-1.4