Strain Fitness in Sphingobium sp. HT1-2 around GFF3702

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3701 and GFF3702 are separated by 348 nucleotidesGFF3702 and GFF3703 are separated by 3 nucleotidesGFF3703 and GFF3704 are separated by 123 nucleotides GFF3701 - L-Proline/Glycine betaine transporter ProP, at 3,745,870 to 3,747,417 GFF3701 GFF3702 - Flagellar motor rotation protein MotB, at 3,747,766 to 3,748,821 GFF3702 GFF3703 - Flagellar motor rotation protein MotA, at 3,748,825 to 3,749,688 GFF3703 GFF3704 - Flagellar hook-associated protein FlgL, at 3,749,812 to 3,750,657 GFF3704 Position (kb) 3747 3748 3749Strain fitness (log2 ratio) -2 -1 0 1 2at 3746.785 kb on + strand, within GFF3701at 3746.935 kb on + strand, within GFF3701at 3746.943 kb on - strand, within GFF3701at 3746.943 kb on - strand, within GFF3701at 3746.943 kb on - strand, within GFF3701at 3746.943 kb on - strand, within GFF3701at 3746.983 kb on + strand, within GFF3701at 3746.988 kb on + strand, within GFF3701at 3746.988 kb on + strand, within GFF3701at 3747.008 kb on - strand, within GFF3701at 3747.019 kb on + strand, within GFF3701at 3747.044 kb on - strand, within GFF3701at 3747.044 kb on - strand, within GFF3701at 3747.066 kb on + strand, within GFF3701at 3747.222 kb on - strand, within GFF3701at 3747.277 kb on + strandat 3747.277 kb on + strandat 3747.277 kb on + strandat 3747.277 kb on + strandat 3747.285 kb on - strandat 3747.285 kb on - strandat 3747.293 kb on - strandat 3747.341 kb on - strandat 3747.387 kb on - strandat 3747.412 kb on - strandat 3747.421 kb on + strandat 3747.436 kb on - strandat 3747.470 kb on - strandat 3747.485 kb on + strandat 3747.488 kb on - strandat 3747.513 kb on + strandat 3747.525 kb on - strandat 3747.581 kb on - strandat 3747.592 kb on - strandat 3747.612 kb on + strandat 3747.612 kb on + strandat 3747.612 kb on + strandat 3747.620 kb on - strandat 3747.620 kb on - strandat 3747.620 kb on - strandat 3747.668 kb on - strandat 3747.683 kb on - strandat 3747.757 kb on + strandat 3747.764 kb on + strandat 3747.764 kb on + strandat 3747.764 kb on + strandat 3747.764 kb on + strandat 3747.764 kb on + strandat 3747.772 kb on - strandat 3747.780 kb on + strandat 3747.780 kb on + strandat 3747.819 kb on - strandat 3747.819 kb on - strandat 3747.824 kb on + strandat 3747.824 kb on + strandat 3747.829 kb on + strandat 3747.829 kb on + strandat 3747.837 kb on - strandat 3747.842 kb on - strandat 3747.875 kb on - strand, within GFF3702at 3747.900 kb on - strand, within GFF3702at 3747.924 kb on - strand, within GFF3702at 3747.928 kb on - strand, within GFF3702at 3747.952 kb on + strand, within GFF3702at 3747.961 kb on - strand, within GFF3702at 3747.968 kb on + strand, within GFF3702at 3747.976 kb on - strand, within GFF3702at 3748.005 kb on + strand, within GFF3702at 3748.005 kb on + strand, within GFF3702at 3748.005 kb on + strand, within GFF3702at 3748.005 kb on + strand, within GFF3702at 3748.005 kb on + strand, within GFF3702at 3748.013 kb on - strand, within GFF3702at 3748.013 kb on - strand, within GFF3702at 3748.013 kb on - strand, within GFF3702at 3748.013 kb on - strand, within GFF3702at 3748.049 kb on + strand, within GFF3702at 3748.049 kb on + strand, within GFF3702at 3748.118 kb on - strand, within GFF3702at 3748.136 kb on + strand, within GFF3702at 3748.139 kb on - strand, within GFF3702at 3748.147 kb on + strand, within GFF3702at 3748.152 kb on + strand, within GFF3702at 3748.155 kb on - strand, within GFF3702at 3748.165 kb on + strand, within GFF3702at 3748.165 kb on + strand, within GFF3702at 3748.165 kb on + strand, within GFF3702at 3748.165 kb on + strand, within GFF3702at 3748.170 kb on + strand, within GFF3702at 3748.200 kb on + strand, within GFF3702at 3748.204 kb on + strand, within GFF3702at 3748.218 kb on - strand, within GFF3702at 3748.243 kb on - strand, within GFF3702at 3748.264 kb on - strand, within GFF3702at 3748.277 kb on + strand, within GFF3702at 3748.292 kb on + strand, within GFF3702at 3748.319 kb on - strand, within GFF3702at 3748.326 kb on - strand, within GFF3702at 3748.360 kb on - strand, within GFF3702at 3748.374 kb on - strand, within GFF3702at 3748.375 kb on - strand, within GFF3702at 3748.433 kb on + strand, within GFF3702at 3748.441 kb on - strand, within GFF3702at 3748.453 kb on + strand, within GFF3702at 3748.454 kb on + strand, within GFF3702at 3748.485 kb on + strand, within GFF3702at 3748.493 kb on - strand, within GFF3702at 3748.610 kb on - strand, within GFF3702at 3748.785 kb on + strandat 3748.785 kb on + strandat 3748.785 kb on + strandat 3748.793 kb on - strandat 3748.793 kb on - strandat 3748.793 kb on - strandat 3748.815 kb on - strandat 3748.879 kb on + strandat 3748.879 kb on + strandat 3748.879 kb on + strandat 3748.884 kb on + strandat 3748.887 kb on - strandat 3748.892 kb on - strandat 3748.906 kb on - strandat 3748.906 kb on - strandat 3748.924 kb on + strand, within GFF3703at 3748.964 kb on - strand, within GFF3703at 3748.970 kb on + strand, within GFF3703at 3749.011 kb on + strand, within GFF3703at 3749.012 kb on + strand, within GFF3703at 3749.019 kb on - strand, within GFF3703at 3749.019 kb on - strand, within GFF3703at 3749.051 kb on + strand, within GFF3703at 3749.051 kb on + strand, within GFF3703at 3749.051 kb on + strand, within GFF3703at 3749.054 kb on - strand, within GFF3703at 3749.059 kb on - strand, within GFF3703at 3749.059 kb on - strand, within GFF3703at 3749.059 kb on - strand, within GFF3703at 3749.059 kb on - strand, within GFF3703at 3749.059 kb on - strand, within GFF3703at 3749.061 kb on + strand, within GFF3703at 3749.071 kb on + strand, within GFF3703at 3749.074 kb on - strand, within GFF3703at 3749.113 kb on - strand, within GFF3703at 3749.117 kb on - strand, within GFF3703at 3749.128 kb on + strand, within GFF3703at 3749.128 kb on + strand, within GFF3703at 3749.136 kb on - strand, within GFF3703at 3749.155 kb on + strand, within GFF3703at 3749.155 kb on + strand, within GFF3703at 3749.163 kb on - strand, within GFF3703at 3749.173 kb on - strand, within GFF3703at 3749.184 kb on - strand, within GFF3703at 3749.195 kb on + strand, within GFF3703at 3749.197 kb on + strand, within GFF3703at 3749.219 kb on + strand, within GFF3703at 3749.219 kb on + strand, within GFF3703at 3749.219 kb on + strand, within GFF3703at 3749.219 kb on + strand, within GFF3703at 3749.219 kb on + strand, within GFF3703at 3749.219 kb on + strand, within GFF3703at 3749.219 kb on + strand, within GFF3703at 3749.219 kb on + strand, within GFF3703at 3749.219 kb on + strand, within GFF3703at 3749.219 kb on + strand, within GFF3703at 3749.219 kb on + strand, within GFF3703at 3749.219 kb on + strand, within GFF3703at 3749.227 kb on + strand, within GFF3703at 3749.227 kb on - strand, within GFF3703at 3749.227 kb on - strand, within GFF3703at 3749.267 kb on - strand, within GFF3703at 3749.285 kb on + strand, within GFF3703at 3749.287 kb on - strand, within GFF3703at 3749.305 kb on + strand, within GFF3703at 3749.329 kb on - strand, within GFF3703at 3749.376 kb on - strand, within GFF3703at 3749.396 kb on - strand, within GFF3703at 3749.428 kb on - strand, within GFF3703at 3749.460 kb on - strand, within GFF3703at 3749.483 kb on + strand, within GFF3703at 3749.483 kb on + strand, within GFF3703at 3749.483 kb on + strand, within GFF3703at 3749.483 kb on + strand, within GFF3703at 3749.491 kb on - strand, within GFF3703at 3749.491 kb on - strand, within GFF3703at 3749.491 kb on - strand, within GFF3703at 3749.491 kb on - strand, within GFF3703at 3749.491 kb on - strand, within GFF3703at 3749.493 kb on - strand, within GFF3703at 3749.500 kb on - strand, within GFF3703at 3749.523 kb on + strand, within GFF3703at 3749.585 kb on + strand, within GFF3703at 3749.590 kb on + strand, within GFF3703at 3749.604 kb on + strandat 3749.604 kb on + strandat 3749.607 kb on - strandat 3749.610 kb on + strandat 3749.612 kb on - strandat 3749.632 kb on + strandat 3749.642 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with D-Glucose and Ammonium Sulfate
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3,746,785 + GFF3701 0.59 -2.3
3,746,935 + GFF3701 0.69 -0.0
3,746,943 - GFF3701 0.69 -0.5
3,746,943 - GFF3701 0.69 -1.0
3,746,943 - GFF3701 0.69 -0.4
3,746,943 - GFF3701 0.69 +0.3
3,746,983 + GFF3701 0.72 -0.8
3,746,988 + GFF3701 0.72 -0.7
3,746,988 + GFF3701 0.72 -0.9
3,747,008 - GFF3701 0.74 -0.9
3,747,019 + GFF3701 0.74 +2.1
3,747,044 - GFF3701 0.76 -1.0
3,747,044 - GFF3701 0.76 +0.5
3,747,066 + GFF3701 0.77 -0.8
3,747,222 - GFF3701 0.87 +0.5
3,747,277 + -0.0
3,747,277 + -1.2
3,747,277 + -0.9
3,747,277 + +0.3
3,747,285 - +0.5
3,747,285 - -0.6
3,747,293 - +0.6
3,747,341 - -0.3
3,747,387 - -1.0
3,747,412 - -0.7
3,747,421 + -0.4
3,747,436 - -0.8
3,747,470 - +0.1
3,747,485 + +0.5
3,747,488 - +1.0
3,747,513 + -0.3
3,747,525 - +1.3
3,747,581 - -0.3
3,747,592 - -1.2
3,747,612 + +0.4
3,747,612 + -0.8
3,747,612 + +0.2
3,747,620 - +1.3
3,747,620 - -0.7
3,747,620 - -0.9
3,747,668 - -0.8
3,747,683 - -1.8
3,747,757 + +0.7
3,747,764 + -0.1
3,747,764 + +0.2
3,747,764 + -1.1
3,747,764 + +0.4
3,747,764 + +1.2
3,747,772 - -0.1
3,747,780 + -0.2
3,747,780 + -0.0
3,747,819 - -0.3
3,747,819 - +0.6
3,747,824 + +0.6
3,747,824 + -1.8
3,747,829 + +1.8
3,747,829 + -2.0
3,747,837 - -0.0
3,747,842 - -1.6
3,747,875 - GFF3702 0.10 +0.2
3,747,900 - GFF3702 0.13 +1.0
3,747,924 - GFF3702 0.15 +0.8
3,747,928 - GFF3702 0.15 -0.5
3,747,952 + GFF3702 0.18 -0.8
3,747,961 - GFF3702 0.18 +0.2
3,747,968 + GFF3702 0.19 +0.8
3,747,976 - GFF3702 0.20 -1.7
3,748,005 + GFF3702 0.23 +0.2
3,748,005 + GFF3702 0.23 -0.4
3,748,005 + GFF3702 0.23 +1.7
3,748,005 + GFF3702 0.23 +0.4
3,748,005 + GFF3702 0.23 -0.5
3,748,013 - GFF3702 0.23 -0.3
3,748,013 - GFF3702 0.23 +0.8
3,748,013 - GFF3702 0.23 +1.1
3,748,013 - GFF3702 0.23 +0.8
3,748,049 + GFF3702 0.27 -0.0
3,748,049 + GFF3702 0.27 -1.2
3,748,118 - GFF3702 0.33 -0.0
3,748,136 + GFF3702 0.35 -0.1
3,748,139 - GFF3702 0.35 +0.0
3,748,147 + GFF3702 0.36 -2.3
3,748,152 + GFF3702 0.37 +1.0
3,748,155 - GFF3702 0.37 -0.6
3,748,165 + GFF3702 0.38 +0.7
3,748,165 + GFF3702 0.38 +0.1
3,748,165 + GFF3702 0.38 -0.8
3,748,165 + GFF3702 0.38 +0.5
3,748,170 + GFF3702 0.38 +1.4
3,748,200 + GFF3702 0.41 -0.5
3,748,204 + GFF3702 0.41 -1.9
3,748,218 - GFF3702 0.43 -0.0
3,748,243 - GFF3702 0.45 -0.9
3,748,264 - GFF3702 0.47 +0.3
3,748,277 + GFF3702 0.48 +0.1
3,748,292 + GFF3702 0.50 +0.7
3,748,319 - GFF3702 0.52 +0.4
3,748,326 - GFF3702 0.53 +0.8
3,748,360 - GFF3702 0.56 -0.8
3,748,374 - GFF3702 0.58 +1.1
3,748,375 - GFF3702 0.58 +0.4
3,748,433 + GFF3702 0.63 +0.8
3,748,441 - GFF3702 0.64 +2.2
3,748,453 + GFF3702 0.65 +0.0
3,748,454 + GFF3702 0.65 -0.8
3,748,485 + GFF3702 0.68 +2.0
3,748,493 - GFF3702 0.69 +0.5
3,748,610 - GFF3702 0.80 -0.5
3,748,785 + -1.8
3,748,785 + -0.2
3,748,785 + +0.2
3,748,793 - +1.7
3,748,793 - -1.1
3,748,793 - +1.1
3,748,815 - +0.3
3,748,879 + +0.5
3,748,879 + +0.8
3,748,879 + -0.1
3,748,884 + -0.4
3,748,887 - +1.7
3,748,892 - +0.8
3,748,906 - +0.0
3,748,906 - -1.1
3,748,924 + GFF3703 0.11 +0.4
3,748,964 - GFF3703 0.16 +0.4
3,748,970 + GFF3703 0.17 +0.5
3,749,011 + GFF3703 0.22 -0.9
3,749,012 + GFF3703 0.22 +0.9
3,749,019 - GFF3703 0.22 +0.2
3,749,019 - GFF3703 0.22 -1.5
3,749,051 + GFF3703 0.26 -0.1
3,749,051 + GFF3703 0.26 +1.4
3,749,051 + GFF3703 0.26 -1.0
3,749,054 - GFF3703 0.27 -0.7
3,749,059 - GFF3703 0.27 +1.3
3,749,059 - GFF3703 0.27 -0.1
3,749,059 - GFF3703 0.27 +0.6
3,749,059 - GFF3703 0.27 +0.2
3,749,059 - GFF3703 0.27 -1.0
3,749,061 + GFF3703 0.27 -1.2
3,749,071 + GFF3703 0.28 +0.1
3,749,074 - GFF3703 0.29 -1.0
3,749,113 - GFF3703 0.33 +1.0
3,749,117 - GFF3703 0.34 -0.8
3,749,128 + GFF3703 0.35 -1.2
3,749,128 + GFF3703 0.35 +0.0
3,749,136 - GFF3703 0.36 +0.5
3,749,155 + GFF3703 0.38 +1.0
3,749,155 + GFF3703 0.38 +0.4
3,749,163 - GFF3703 0.39 +0.1
3,749,173 - GFF3703 0.40 +1.3
3,749,184 - GFF3703 0.42 +0.2
3,749,195 + GFF3703 0.43 +0.7
3,749,197 + GFF3703 0.43 +1.1
3,749,219 + GFF3703 0.46 -0.8
3,749,219 + GFF3703 0.46 -0.5
3,749,219 + GFF3703 0.46 +0.1
3,749,219 + GFF3703 0.46 -0.4
3,749,219 + GFF3703 0.46 +0.3
3,749,219 + GFF3703 0.46 -1.1
3,749,219 + GFF3703 0.46 -1.0
3,749,219 + GFF3703 0.46 -0.3
3,749,219 + GFF3703 0.46 -0.3
3,749,219 + GFF3703 0.46 +0.2
3,749,219 + GFF3703 0.46 -0.3
3,749,219 + GFF3703 0.46 +0.5
3,749,227 + GFF3703 0.47 +1.1
3,749,227 - GFF3703 0.47 -0.0
3,749,227 - GFF3703 0.47 -1.0
3,749,267 - GFF3703 0.51 +0.6
3,749,285 + GFF3703 0.53 -0.0
3,749,287 - GFF3703 0.53 -0.0
3,749,305 + GFF3703 0.56 +0.3
3,749,329 - GFF3703 0.58 +0.8
3,749,376 - GFF3703 0.64 +1.1
3,749,396 - GFF3703 0.66 +1.3
3,749,428 - GFF3703 0.70 +0.3
3,749,460 - GFF3703 0.73 +0.6
3,749,483 + GFF3703 0.76 -0.8
3,749,483 + GFF3703 0.76 +0.1
3,749,483 + GFF3703 0.76 -1.5
3,749,483 + GFF3703 0.76 -0.5
3,749,491 - GFF3703 0.77 -0.9
3,749,491 - GFF3703 0.77 +0.2
3,749,491 - GFF3703 0.77 -0.3
3,749,491 - GFF3703 0.77 +0.6
3,749,491 - GFF3703 0.77 +0.8
3,749,493 - GFF3703 0.77 +1.0
3,749,500 - GFF3703 0.78 -1.2
3,749,523 + GFF3703 0.81 +1.2
3,749,585 + GFF3703 0.88 -0.5
3,749,590 + GFF3703 0.89 -0.8
3,749,604 + +0.0
3,749,604 + +0.2
3,749,607 - -0.7
3,749,610 + +0.8
3,749,612 - +0.6
3,749,632 + +0.5
3,749,642 + -0.0

Or see this region's nucleotide sequence