Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3701 and GFF3702 are separated by 348 nucleotides GFF3702 and GFF3703 are separated by 3 nucleotides GFF3703 and GFF3704 are separated by 123 nucleotides
GFF3701 - L-Proline/Glycine betaine transporter ProP, at 3,745,870 to 3,747,417
GFF3701
GFF3702 - Flagellar motor rotation protein MotB, at 3,747,766 to 3,748,821
GFF3702
GFF3703 - Flagellar motor rotation protein MotA, at 3,748,825 to 3,749,688
GFF3703
GFF3704 - Flagellar hook-associated protein FlgL, at 3,749,812 to 3,750,657
GFF3704
Position (kb)
3747
3748
3749 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3746.785 kb on + strand, within GFF3701 at 3746.935 kb on + strand, within GFF3701 at 3746.943 kb on - strand, within GFF3701 at 3746.943 kb on - strand, within GFF3701 at 3746.943 kb on - strand, within GFF3701 at 3746.943 kb on - strand, within GFF3701 at 3746.983 kb on + strand, within GFF3701 at 3746.988 kb on + strand, within GFF3701 at 3746.988 kb on + strand, within GFF3701 at 3747.008 kb on - strand, within GFF3701 at 3747.019 kb on + strand, within GFF3701 at 3747.044 kb on - strand, within GFF3701 at 3747.044 kb on - strand, within GFF3701 at 3747.066 kb on + strand, within GFF3701 at 3747.222 kb on - strand, within GFF3701 at 3747.277 kb on + strand at 3747.277 kb on + strand at 3747.277 kb on + strand at 3747.277 kb on + strand at 3747.285 kb on - strand at 3747.285 kb on - strand at 3747.293 kb on - strand at 3747.341 kb on - strand at 3747.387 kb on - strand at 3747.412 kb on - strand at 3747.421 kb on + strand at 3747.436 kb on - strand at 3747.470 kb on - strand at 3747.485 kb on + strand at 3747.488 kb on - strand at 3747.513 kb on + strand at 3747.525 kb on - strand at 3747.581 kb on - strand at 3747.592 kb on - strand at 3747.612 kb on + strand at 3747.612 kb on + strand at 3747.612 kb on + strand at 3747.620 kb on - strand at 3747.620 kb on - strand at 3747.620 kb on - strand at 3747.668 kb on - strand at 3747.683 kb on - strand at 3747.757 kb on + strand at 3747.764 kb on + strand at 3747.764 kb on + strand at 3747.764 kb on + strand at 3747.764 kb on + strand at 3747.764 kb on + strand at 3747.772 kb on - strand at 3747.780 kb on + strand at 3747.780 kb on + strand at 3747.819 kb on - strand at 3747.819 kb on - strand at 3747.824 kb on + strand at 3747.824 kb on + strand at 3747.829 kb on + strand at 3747.829 kb on + strand at 3747.837 kb on - strand at 3747.842 kb on - strand at 3747.875 kb on - strand, within GFF3702 at 3747.900 kb on - strand, within GFF3702 at 3747.924 kb on - strand, within GFF3702 at 3747.928 kb on - strand, within GFF3702 at 3747.952 kb on + strand, within GFF3702 at 3747.961 kb on - strand, within GFF3702 at 3747.968 kb on + strand, within GFF3702 at 3747.976 kb on - strand, within GFF3702 at 3748.005 kb on + strand, within GFF3702 at 3748.005 kb on + strand, within GFF3702 at 3748.005 kb on + strand, within GFF3702 at 3748.005 kb on + strand, within GFF3702 at 3748.005 kb on + strand, within GFF3702 at 3748.013 kb on - strand, within GFF3702 at 3748.013 kb on - strand, within GFF3702 at 3748.013 kb on - strand, within GFF3702 at 3748.013 kb on - strand, within GFF3702 at 3748.049 kb on + strand, within GFF3702 at 3748.049 kb on + strand, within GFF3702 at 3748.118 kb on - strand, within GFF3702 at 3748.136 kb on + strand, within GFF3702 at 3748.139 kb on - strand, within GFF3702 at 3748.147 kb on + strand, within GFF3702 at 3748.152 kb on + strand, within GFF3702 at 3748.155 kb on - strand, within GFF3702 at 3748.165 kb on + strand, within GFF3702 at 3748.165 kb on + strand, within GFF3702 at 3748.165 kb on + strand, within GFF3702 at 3748.165 kb on + strand, within GFF3702 at 3748.170 kb on + strand, within GFF3702 at 3748.200 kb on + strand, within GFF3702 at 3748.204 kb on + strand, within GFF3702 at 3748.218 kb on - strand, within GFF3702 at 3748.243 kb on - strand, within GFF3702 at 3748.264 kb on - strand, within GFF3702 at 3748.277 kb on + strand, within GFF3702 at 3748.292 kb on + strand, within GFF3702 at 3748.319 kb on - strand, within GFF3702 at 3748.326 kb on - strand, within GFF3702 at 3748.360 kb on - strand, within GFF3702 at 3748.374 kb on - strand, within GFF3702 at 3748.375 kb on - strand, within GFF3702 at 3748.433 kb on + strand, within GFF3702 at 3748.441 kb on - strand, within GFF3702 at 3748.453 kb on + strand, within GFF3702 at 3748.454 kb on + strand, within GFF3702 at 3748.485 kb on + strand, within GFF3702 at 3748.493 kb on - strand, within GFF3702 at 3748.610 kb on - strand, within GFF3702 at 3748.785 kb on + strand at 3748.785 kb on + strand at 3748.785 kb on + strand at 3748.793 kb on - strand at 3748.793 kb on - strand at 3748.793 kb on - strand at 3748.815 kb on - strand at 3748.879 kb on + strand at 3748.879 kb on + strand at 3748.879 kb on + strand at 3748.884 kb on + strand at 3748.887 kb on - strand at 3748.892 kb on - strand at 3748.906 kb on - strand at 3748.906 kb on - strand at 3748.924 kb on + strand, within GFF3703 at 3748.964 kb on - strand, within GFF3703 at 3748.970 kb on + strand, within GFF3703 at 3749.011 kb on + strand, within GFF3703 at 3749.012 kb on + strand, within GFF3703 at 3749.019 kb on - strand, within GFF3703 at 3749.019 kb on - strand, within GFF3703 at 3749.051 kb on + strand, within GFF3703 at 3749.051 kb on + strand, within GFF3703 at 3749.051 kb on + strand, within GFF3703 at 3749.054 kb on - strand, within GFF3703 at 3749.059 kb on - strand, within GFF3703 at 3749.059 kb on - strand, within GFF3703 at 3749.059 kb on - strand, within GFF3703 at 3749.059 kb on - strand, within GFF3703 at 3749.059 kb on - strand, within GFF3703 at 3749.061 kb on + strand, within GFF3703 at 3749.071 kb on + strand, within GFF3703 at 3749.074 kb on - strand, within GFF3703 at 3749.113 kb on - strand, within GFF3703 at 3749.117 kb on - strand, within GFF3703 at 3749.128 kb on + strand, within GFF3703 at 3749.128 kb on + strand, within GFF3703 at 3749.136 kb on - strand, within GFF3703 at 3749.155 kb on + strand, within GFF3703 at 3749.155 kb on + strand, within GFF3703 at 3749.163 kb on - strand, within GFF3703 at 3749.173 kb on - strand, within GFF3703 at 3749.184 kb on - strand, within GFF3703 at 3749.195 kb on + strand, within GFF3703 at 3749.197 kb on + strand, within GFF3703 at 3749.219 kb on + strand, within GFF3703 at 3749.219 kb on + strand, within GFF3703 at 3749.219 kb on + strand, within GFF3703 at 3749.219 kb on + strand, within GFF3703 at 3749.219 kb on + strand, within GFF3703 at 3749.219 kb on + strand, within GFF3703 at 3749.219 kb on + strand, within GFF3703 at 3749.219 kb on + strand, within GFF3703 at 3749.219 kb on + strand, within GFF3703 at 3749.219 kb on + strand, within GFF3703 at 3749.219 kb on + strand, within GFF3703 at 3749.219 kb on + strand, within GFF3703 at 3749.227 kb on + strand, within GFF3703 at 3749.227 kb on - strand, within GFF3703 at 3749.227 kb on - strand, within GFF3703 at 3749.267 kb on - strand, within GFF3703 at 3749.285 kb on + strand, within GFF3703 at 3749.287 kb on - strand, within GFF3703 at 3749.305 kb on + strand, within GFF3703 at 3749.329 kb on - strand, within GFF3703 at 3749.376 kb on - strand, within GFF3703 at 3749.396 kb on - strand, within GFF3703 at 3749.428 kb on - strand, within GFF3703 at 3749.460 kb on - strand, within GFF3703 at 3749.483 kb on + strand, within GFF3703 at 3749.483 kb on + strand, within GFF3703 at 3749.483 kb on + strand, within GFF3703 at 3749.483 kb on + strand, within GFF3703 at 3749.491 kb on - strand, within GFF3703 at 3749.491 kb on - strand, within GFF3703 at 3749.491 kb on - strand, within GFF3703 at 3749.491 kb on - strand, within GFF3703 at 3749.491 kb on - strand, within GFF3703 at 3749.493 kb on - strand, within GFF3703 at 3749.500 kb on - strand, within GFF3703 at 3749.523 kb on + strand, within GFF3703 at 3749.585 kb on + strand, within GFF3703 at 3749.590 kb on + strand, within GFF3703 at 3749.604 kb on + strand at 3749.604 kb on + strand at 3749.607 kb on - strand at 3749.610 kb on + strand at 3749.612 kb on - strand at 3749.632 kb on + strand at 3749.642 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with D-Glucose and Ammonium Sulfate remove 3,746,785 + GFF3701 0.59 -2.3 3,746,935 + GFF3701 0.69 -0.0 3,746,943 - GFF3701 0.69 -0.5 3,746,943 - GFF3701 0.69 -1.0 3,746,943 - GFF3701 0.69 -0.4 3,746,943 - GFF3701 0.69 +0.3 3,746,983 + GFF3701 0.72 -0.8 3,746,988 + GFF3701 0.72 -0.7 3,746,988 + GFF3701 0.72 -0.9 3,747,008 - GFF3701 0.74 -0.9 3,747,019 + GFF3701 0.74 +2.1 3,747,044 - GFF3701 0.76 -1.0 3,747,044 - GFF3701 0.76 +0.5 3,747,066 + GFF3701 0.77 -0.8 3,747,222 - GFF3701 0.87 +0.5 3,747,277 + -0.0 3,747,277 + -1.2 3,747,277 + -0.9 3,747,277 + +0.3 3,747,285 - +0.5 3,747,285 - -0.6 3,747,293 - +0.6 3,747,341 - -0.3 3,747,387 - -1.0 3,747,412 - -0.7 3,747,421 + -0.4 3,747,436 - -0.8 3,747,470 - +0.1 3,747,485 + +0.5 3,747,488 - +1.0 3,747,513 + -0.3 3,747,525 - +1.3 3,747,581 - -0.3 3,747,592 - -1.2 3,747,612 + +0.4 3,747,612 + -0.8 3,747,612 + +0.2 3,747,620 - +1.3 3,747,620 - -0.7 3,747,620 - -0.9 3,747,668 - -0.8 3,747,683 - -1.8 3,747,757 + +0.7 3,747,764 + -0.1 3,747,764 + +0.2 3,747,764 + -1.1 3,747,764 + +0.4 3,747,764 + +1.2 3,747,772 - -0.1 3,747,780 + -0.2 3,747,780 + -0.0 3,747,819 - -0.3 3,747,819 - +0.6 3,747,824 + +0.6 3,747,824 + -1.8 3,747,829 + +1.8 3,747,829 + -2.0 3,747,837 - -0.0 3,747,842 - -1.6 3,747,875 - GFF3702 0.10 +0.2 3,747,900 - GFF3702 0.13 +1.0 3,747,924 - GFF3702 0.15 +0.8 3,747,928 - GFF3702 0.15 -0.5 3,747,952 + GFF3702 0.18 -0.8 3,747,961 - GFF3702 0.18 +0.2 3,747,968 + GFF3702 0.19 +0.8 3,747,976 - GFF3702 0.20 -1.7 3,748,005 + GFF3702 0.23 +0.2 3,748,005 + GFF3702 0.23 -0.4 3,748,005 + GFF3702 0.23 +1.7 3,748,005 + GFF3702 0.23 +0.4 3,748,005 + GFF3702 0.23 -0.5 3,748,013 - GFF3702 0.23 -0.3 3,748,013 - GFF3702 0.23 +0.8 3,748,013 - GFF3702 0.23 +1.1 3,748,013 - GFF3702 0.23 +0.8 3,748,049 + GFF3702 0.27 -0.0 3,748,049 + GFF3702 0.27 -1.2 3,748,118 - GFF3702 0.33 -0.0 3,748,136 + GFF3702 0.35 -0.1 3,748,139 - GFF3702 0.35 +0.0 3,748,147 + GFF3702 0.36 -2.3 3,748,152 + GFF3702 0.37 +1.0 3,748,155 - GFF3702 0.37 -0.6 3,748,165 + GFF3702 0.38 +0.7 3,748,165 + GFF3702 0.38 +0.1 3,748,165 + GFF3702 0.38 -0.8 3,748,165 + GFF3702 0.38 +0.5 3,748,170 + GFF3702 0.38 +1.4 3,748,200 + GFF3702 0.41 -0.5 3,748,204 + GFF3702 0.41 -1.9 3,748,218 - GFF3702 0.43 -0.0 3,748,243 - GFF3702 0.45 -0.9 3,748,264 - GFF3702 0.47 +0.3 3,748,277 + GFF3702 0.48 +0.1 3,748,292 + GFF3702 0.50 +0.7 3,748,319 - GFF3702 0.52 +0.4 3,748,326 - GFF3702 0.53 +0.8 3,748,360 - GFF3702 0.56 -0.8 3,748,374 - GFF3702 0.58 +1.1 3,748,375 - GFF3702 0.58 +0.4 3,748,433 + GFF3702 0.63 +0.8 3,748,441 - GFF3702 0.64 +2.2 3,748,453 + GFF3702 0.65 +0.0 3,748,454 + GFF3702 0.65 -0.8 3,748,485 + GFF3702 0.68 +2.0 3,748,493 - GFF3702 0.69 +0.5 3,748,610 - GFF3702 0.80 -0.5 3,748,785 + -1.8 3,748,785 + -0.2 3,748,785 + +0.2 3,748,793 - +1.7 3,748,793 - -1.1 3,748,793 - +1.1 3,748,815 - +0.3 3,748,879 + +0.5 3,748,879 + +0.8 3,748,879 + -0.1 3,748,884 + -0.4 3,748,887 - +1.7 3,748,892 - +0.8 3,748,906 - +0.0 3,748,906 - -1.1 3,748,924 + GFF3703 0.11 +0.4 3,748,964 - GFF3703 0.16 +0.4 3,748,970 + GFF3703 0.17 +0.5 3,749,011 + GFF3703 0.22 -0.9 3,749,012 + GFF3703 0.22 +0.9 3,749,019 - GFF3703 0.22 +0.2 3,749,019 - GFF3703 0.22 -1.5 3,749,051 + GFF3703 0.26 -0.1 3,749,051 + GFF3703 0.26 +1.4 3,749,051 + GFF3703 0.26 -1.0 3,749,054 - GFF3703 0.27 -0.7 3,749,059 - GFF3703 0.27 +1.3 3,749,059 - GFF3703 0.27 -0.1 3,749,059 - GFF3703 0.27 +0.6 3,749,059 - GFF3703 0.27 +0.2 3,749,059 - GFF3703 0.27 -1.0 3,749,061 + GFF3703 0.27 -1.2 3,749,071 + GFF3703 0.28 +0.1 3,749,074 - GFF3703 0.29 -1.0 3,749,113 - GFF3703 0.33 +1.0 3,749,117 - GFF3703 0.34 -0.8 3,749,128 + GFF3703 0.35 -1.2 3,749,128 + GFF3703 0.35 +0.0 3,749,136 - GFF3703 0.36 +0.5 3,749,155 + GFF3703 0.38 +1.0 3,749,155 + GFF3703 0.38 +0.4 3,749,163 - GFF3703 0.39 +0.1 3,749,173 - GFF3703 0.40 +1.3 3,749,184 - GFF3703 0.42 +0.2 3,749,195 + GFF3703 0.43 +0.7 3,749,197 + GFF3703 0.43 +1.1 3,749,219 + GFF3703 0.46 -0.8 3,749,219 + GFF3703 0.46 -0.5 3,749,219 + GFF3703 0.46 +0.1 3,749,219 + GFF3703 0.46 -0.4 3,749,219 + GFF3703 0.46 +0.3 3,749,219 + GFF3703 0.46 -1.1 3,749,219 + GFF3703 0.46 -1.0 3,749,219 + GFF3703 0.46 -0.3 3,749,219 + GFF3703 0.46 -0.3 3,749,219 + GFF3703 0.46 +0.2 3,749,219 + GFF3703 0.46 -0.3 3,749,219 + GFF3703 0.46 +0.5 3,749,227 + GFF3703 0.47 +1.1 3,749,227 - GFF3703 0.47 -0.0 3,749,227 - GFF3703 0.47 -1.0 3,749,267 - GFF3703 0.51 +0.6 3,749,285 + GFF3703 0.53 -0.0 3,749,287 - GFF3703 0.53 -0.0 3,749,305 + GFF3703 0.56 +0.3 3,749,329 - GFF3703 0.58 +0.8 3,749,376 - GFF3703 0.64 +1.1 3,749,396 - GFF3703 0.66 +1.3 3,749,428 - GFF3703 0.70 +0.3 3,749,460 - GFF3703 0.73 +0.6 3,749,483 + GFF3703 0.76 -0.8 3,749,483 + GFF3703 0.76 +0.1 3,749,483 + GFF3703 0.76 -1.5 3,749,483 + GFF3703 0.76 -0.5 3,749,491 - GFF3703 0.77 -0.9 3,749,491 - GFF3703 0.77 +0.2 3,749,491 - GFF3703 0.77 -0.3 3,749,491 - GFF3703 0.77 +0.6 3,749,491 - GFF3703 0.77 +0.8 3,749,493 - GFF3703 0.77 +1.0 3,749,500 - GFF3703 0.78 -1.2 3,749,523 + GFF3703 0.81 +1.2 3,749,585 + GFF3703 0.88 -0.5 3,749,590 + GFF3703 0.89 -0.8 3,749,604 + +0.0 3,749,604 + +0.2 3,749,607 - -0.7 3,749,610 + +0.8 3,749,612 - +0.6 3,749,632 + +0.5 3,749,642 + -0.0
Or see this region's nucleotide sequence