Strain Fitness in Sphingobium sp. HT1-2 around GFF3701

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,744,898	-		GFF3700	0.41	+0.5
3,744,905	+		GFF3700	0.42	-1.5
3,744,918	+		GFF3700	0.43	-0.4
3,744,918	+		GFF3700	0.43	-0.9
3,744,918	+		GFF3700	0.43	-0.0
3,744,918	+		GFF3700	0.43	+0.9
3,744,918	+		GFF3700	0.43	-0.2
3,744,921	-		GFF3700	0.43	+0.2
3,744,926	-		GFF3700	0.43	-1.2
3,744,947	+		GFF3700	0.45	+0.6
3,744,960	+		GFF3700	0.46	-0.3
3,745,028	-		GFF3700	0.51	+0.9
3,745,076	+		GFF3700	0.54	-1.0
3,745,079	-		GFF3700	0.54	+0.1
3,745,086	+		GFF3700	0.55	+0.5
3,745,107	+		GFF3700	0.56	+0.5
3,745,115	-		GFF3700	0.57	+0.1
3,745,118	+		GFF3700	0.57	-0.9
3,745,119	-		GFF3700	0.57	+1.9
3,745,123	+		GFF3700	0.57	+0.2
3,745,125	-		GFF3700	0.58	+0.3
3,745,126	-		GFF3700	0.58	-0.8
3,745,142	+		GFF3700	0.59	+0.1
3,745,152	-		GFF3700	0.60	-0.8
3,745,179	+		GFF3700	0.61	-0.3
3,745,247	-		GFF3700	0.66	-1.0
3,745,247	-		GFF3700	0.66	+0.6
3,745,263	+		GFF3700	0.68	+0.1
3,745,266	+		GFF3700	0.68	-2.1
3,745,276	+		GFF3700	0.69	+0.7
3,745,283	+		GFF3700	0.69	-2.0
3,745,291	-		GFF3700	0.70	-0.5
3,745,320	-		GFF3700	0.72	-1.2
3,745,338	-		GFF3700	0.73	+0.6
3,745,347	+		GFF3700	0.74	-0.5
3,745,375	+		GFF3700	0.76	+0.4
3,745,375	+		GFF3700	0.76	+1.6
3,745,375	+		GFF3700	0.76	+0.8
3,745,375	+		GFF3700	0.76	-0.4
3,745,375	+		GFF3700	0.76	-1.6
3,745,383	-		GFF3700	0.76	-1.2
3,745,408	+		GFF3700	0.78	+0.2
3,745,410	+		GFF3700	0.78	+0.2
3,745,434	+		GFF3700	0.80	-0.2
3,745,434	+		GFF3700	0.80	+0.8
3,745,442	-		GFF3700	0.81	-0.1
3,745,442	-		GFF3700	0.81	-2.5
3,745,442	-		GFF3700	0.81	-0.2
3,745,442	-		GFF3700	0.81	+0.7
3,745,442	-		GFF3700	0.81	+0.4
3,745,450	+		GFF3700	0.81	-1.5
3,745,470	-		GFF3700	0.83	+0.2
3,745,524	+		GFF3700	0.87	-0.3
3,745,524	+		GFF3700	0.87	+1.2
3,745,533	+		GFF3700	0.87	+0.2
3,745,543	+		GFF3700	0.88	-0.1
3,745,557	-		GFF3700	0.89	+0.2
3,745,558	-		GFF3700	0.89	-0.3
3,745,560	+		GFF3700	0.89	-0.2
3,745,560	+		GFF3700	0.89	-0.0
3,745,560	+		GFF3700	0.89	-0.7
3,745,568	-		GFF3700	0.90	+2.1
3,745,568	-		GFF3700	0.90	+0.4
3,745,568	-		GFF3700	0.90	-0.9
3,745,597	+				-0.4
3,745,597	+				-0.6
3,745,597	+				+0.2
3,745,597	+				+0.5
3,745,597	+				-0.1
3,745,597	+				+0.4
3,745,597	+				+0.0
3,745,597	+				-0.3
3,745,597	+				-0.7
3,745,604	+				+0.6
3,745,604	+				+0.3
3,745,604	+				+0.5
3,745,604	+				-0.8
3,745,604	+				+0.5
3,745,605	-				-0.5
3,745,605	-				+0.1
3,745,605	-				-1.8
3,745,605	-				-0.7
3,745,605	-				-0.8
3,745,605	-				+1.4
3,745,605	-				-0.2
3,745,609	+				-0.9
3,745,609	+				-0.2
3,745,609	+				+0.8
3,745,612	-				+0.0
3,745,612	-				-0.9
3,745,614	+				-0.3
3,745,632	-				-1.6
3,745,641	-				+0.4
3,745,678	+				+0.0
3,745,696	-				+0.7
3,745,751	-				+1.1
3,745,765	-				-0.4
3,745,802	-				-1.0
3,745,820	-				-0.7
3,745,822	-				-0.3
3,745,867	+				+1.2
3,745,943	+				-1.3
3,745,951	-				-0.2
3,745,951	-				-0.7
3,745,994	+				-0.6
3,746,044	+		GFF3701	0.11	-0.6
3,746,087	-		GFF3701	0.14	+1.6
3,746,087	-		GFF3701	0.14	+0.1
3,746,087	-		GFF3701	0.14	+0.8
3,746,185	-		GFF3701	0.20	+1.1
3,746,215	-		GFF3701	0.22	+1.1
3,746,217	-		GFF3701	0.22	-0.0
3,746,222	+		GFF3701	0.23	-0.6
3,746,222	+		GFF3701	0.23	+0.1
3,746,230	-		GFF3701	0.23	-0.9
3,746,241	+		GFF3701	0.24	-1.3
3,746,241	+		GFF3701	0.24	+0.8
3,746,241	+		GFF3701	0.24	+0.3
3,746,258	-		GFF3701	0.25	-1.8
3,746,263	-		GFF3701	0.25	+1.3
3,746,264	+		GFF3701	0.25	-0.8
3,746,264	+		GFF3701	0.25	-2.2
3,746,272	-		GFF3701	0.26	-1.8
3,746,277	-		GFF3701	0.26	+0.1
3,746,279	+		GFF3701	0.26	+1.1
3,746,279	+		GFF3701	0.26	-0.4
3,746,287	-		GFF3701	0.27	-0.5
3,746,320	-		GFF3701	0.29	+0.2
3,746,342	-		GFF3701	0.30	+0.8
3,746,408	+		GFF3701	0.35	-0.7
3,746,429	+		GFF3701	0.36	+0.3
3,746,482	+		GFF3701	0.40	-1.1
3,746,487	+		GFF3701	0.40	+0.1
3,746,492	-		GFF3701	0.40	-0.6
3,746,497	-		GFF3701	0.41	-1.4
3,746,497	-		GFF3701	0.41	-0.0
3,746,501	-		GFF3701	0.41	+2.1
3,746,502	-		GFF3701	0.41	+0.5
3,746,532	+		GFF3701	0.43	-0.1
3,746,535	-		GFF3701	0.43	-1.3
3,746,586	-		GFF3701	0.46	+1.3
3,746,660	-		GFF3701	0.51	-0.9
3,746,660	-		GFF3701	0.51	-0.5
3,746,785	+		GFF3701	0.59	-2.3
3,746,935	+		GFF3701	0.69	-0.0
3,746,943	-		GFF3701	0.69	-0.5
3,746,943	-		GFF3701	0.69	-1.0
3,746,943	-		GFF3701	0.69	-0.4
3,746,943	-		GFF3701	0.69	+0.3
3,746,983	+		GFF3701	0.72	-0.8
3,746,988	+		GFF3701	0.72	-0.7
3,746,988	+		GFF3701	0.72	-0.9
3,747,008	-		GFF3701	0.74	-0.9
3,747,019	+		GFF3701	0.74	+2.1
3,747,044	-		GFF3701	0.76	-1.0
3,747,044	-		GFF3701	0.76	+0.5
3,747,066	+		GFF3701	0.77	-0.8
3,747,222	-		GFF3701	0.87	+0.5
3,747,277	+				-0.0
3,747,277	+				-1.2
3,747,277	+				-0.9
3,747,277	+				+0.3
3,747,285	-				+0.5
3,747,285	-				-0.6
3,747,293	-				+0.6
3,747,341	-				-0.3
3,747,387	-				-1.0
3,747,412	-				-0.7
3,747,421	+				-0.4
3,747,436	-				-0.8
3,747,470	-				+0.1
3,747,485	+				+0.5
3,747,488	-				+1.0
3,747,513	+				-0.3
3,747,525	-				+1.3
3,747,581	-				-0.3
3,747,592	-				-1.2
3,747,612	+				+0.4
3,747,612	+				-0.8
3,747,612	+				+0.2
3,747,620	-				+1.3
3,747,620	-				-0.7
3,747,620	-				-0.9
3,747,668	-				-0.8
3,747,683	-				-1.8
3,747,757	+				+0.7
3,747,764	+				-0.1
3,747,764	+				+0.2
3,747,764	+				-1.1
3,747,764	+				+0.4
3,747,764	+				+1.2
3,747,772	-				-0.1
3,747,780	+				-0.2
3,747,780	+				-0.0
3,747,819	-				-0.3
3,747,819	-				+0.6
3,747,824	+				+0.6
3,747,824	+				-1.8
3,747,829	+				+1.8
3,747,829	+				-2.0
3,747,837	-				-0.0
3,747,842	-				-1.6
3,747,875	-		GFF3702	0.10	+0.2
3,747,900	-		GFF3702	0.13	+1.0
3,747,924	-		GFF3702	0.15	+0.8
3,747,928	-		GFF3702	0.15	-0.5
3,747,952	+		GFF3702	0.18	-0.8
3,747,961	-		GFF3702	0.18	+0.2
3,747,968	+		GFF3702	0.19	+0.8
3,747,976	-		GFF3702	0.20	-1.7
3,748,005	+		GFF3702	0.23	+0.2
3,748,005	+		GFF3702	0.23	-0.4
3,748,005	+		GFF3702	0.23	+1.7
3,748,005	+		GFF3702	0.23	+0.4
3,748,005	+		GFF3702	0.23	-0.5
3,748,013	-		GFF3702	0.23	-0.3
3,748,013	-		GFF3702	0.23	+0.8
3,748,013	-		GFF3702	0.23	+1.1
3,748,013	-		GFF3702	0.23	+0.8
3,748,049	+		GFF3702	0.27	-0.0
3,748,049	+		GFF3702	0.27	-1.2
3,748,118	-		GFF3702	0.33	-0.0
3,748,136	+		GFF3702	0.35	-0.1
3,748,139	-		GFF3702	0.35	+0.0
3,748,147	+		GFF3702	0.36	-2.3
3,748,152	+		GFF3702	0.37	+1.0
3,748,155	-		GFF3702	0.37	-0.6
3,748,165	+		GFF3702	0.38	+0.7
3,748,165	+		GFF3702	0.38	+0.1
3,748,165	+		GFF3702	0.38	-0.8
3,748,165	+		GFF3702	0.38	+0.5
3,748,170	+		GFF3702	0.38	+1.4
3,748,200	+		GFF3702	0.41	-0.5
3,748,204	+		GFF3702	0.41	-1.9
3,748,218	-		GFF3702	0.43	-0.0
3,748,243	-		GFF3702	0.45	-0.9
3,748,264	-		GFF3702	0.47	+0.3
3,748,277	+		GFF3702	0.48	+0.1
3,748,292	+		GFF3702	0.50	+0.7
3,748,319	-		GFF3702	0.52	+0.4
3,748,326	-		GFF3702	0.53	+0.8
3,748,360	-		GFF3702	0.56	-0.8
3,748,374	-		GFF3702	0.58	+1.1
3,748,375	-		GFF3702	0.58	+0.4