Strain Fitness in Sphingobium sp. HT1-2 around GFF3570

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,612,983	-		GFF3568	0.84	-0.6
3,613,004	-		GFF3568	0.84	-0.9
3,613,004	-		GFF3568	0.84	+0.2
3,613,004	-		GFF3568	0.84	+0.4
3,613,037	+		GFF3568	0.85	-0.2
3,613,037	+		GFF3568	0.85	+0.4
3,613,053	+		GFF3568	0.86	-1.3
3,613,070	-		GFF3568	0.86	-0.3
3,613,080	+		GFF3568	0.86	+1.1
3,613,080	-		GFF3568	0.86	+1.0
3,613,080	-		GFF3568	0.86	-1.2
3,613,080	-		GFF3568	0.86	+0.1
3,613,080	-		GFF3568	0.86	-0.1
3,613,088	+		GFF3568	0.87	+1.4
3,613,094	-		GFF3568	0.87	-0.0
3,613,098	+		GFF3568	0.87	+0.6
3,613,098	+		GFF3568	0.87	+0.2
3,613,106	-		GFF3568	0.87	+0.5
3,613,113	+		GFF3568	0.87	-1.3
3,613,130	+		GFF3568	0.88	-0.4
3,613,175	+		GFF3568	0.89	-1.6
3,613,192	-		GFF3568	0.89	+0.3
3,613,197	-		GFF3568	0.89	-0.8
3,613,214	-		GFF3568	0.90	-0.7
3,613,221	+				-1.8
3,613,226	-				+1.2
3,613,229	-				-0.7
3,613,308	-				+1.3
3,613,312	+				-1.3
3,613,319	-				-0.3
3,613,323	+				-1.2
3,613,339	-				+0.7
3,613,348	+				+0.5
3,613,348	-				-1.9
3,613,387	+				-1.9
3,613,390	+				+1.4
3,613,396	+				-0.6
3,613,397	+				+0.5
3,613,405	-				-0.3
3,613,429	-				+0.5
3,613,441	-				+1.1
3,613,447	+				-2.4
3,613,455	-				+0.8
3,613,461	+				-0.0
3,613,469	-				-0.8
3,613,475	+				-1.4
3,613,475	+				+0.2
3,613,483	-				-1.0
3,613,483	-				+0.1
3,613,483	-				-0.7
3,613,483	-				-2.2
3,613,483	-				-1.4
3,613,541	-				-1.6
3,613,560	+				+0.6
3,613,574	+				+1.0
3,613,598	+				-0.1
3,613,598	+				-1.3
3,613,634	-				-0.4
3,613,684	+		GFF3569	0.17	-1.7
3,613,690	-		GFF3569	0.18	-1.1
3,613,714	-		GFF3569	0.25	-1.2
3,613,748	+		GFF3569	0.35	-1.4
3,613,767	+		GFF3569	0.40	-2.2
3,613,782	+		GFF3569	0.44	+0.8
3,613,787	+		GFF3569	0.46	-1.4
3,613,792	+		GFF3569	0.47	-1.6
3,613,792	+		GFF3569	0.47	+0.7
3,613,792	+		GFF3569	0.47	+1.2
3,613,792	+		GFF3569	0.47	-1.6
3,613,792	+		GFF3569	0.47	-1.2
3,613,792	+		GFF3569	0.47	-1.6
3,613,792	+		GFF3569	0.47	-0.9
3,613,792	+		GFF3569	0.47	+1.8
3,613,792	+		GFF3569	0.47	+0.4
3,613,800	-		GFF3569	0.49	-1.4
3,613,800	-		GFF3569	0.49	+0.1
3,613,800	-		GFF3569	0.49	-0.2
3,613,809	+		GFF3569	0.52	-0.5
3,613,836	+		GFF3569	0.60	-0.4
3,613,839	+		GFF3569	0.60	-1.0
3,613,839	+		GFF3569	0.60	-2.1
3,613,839	+		GFF3569	0.60	-1.7
3,613,841	+		GFF3569	0.61	-0.4
3,613,847	-		GFF3569	0.63	+0.5
3,613,847	-		GFF3569	0.63	-2.5
3,613,849	+		GFF3569	0.63	-0.4
3,613,857	+		GFF3569	0.66	-0.2
3,613,857	-		GFF3569	0.66	-2.2
3,613,857	-		GFF3569	0.66	-0.4
3,613,891	+		GFF3569	0.75	-2.1
3,613,903	+		GFF3569	0.79	-1.1
3,613,903	+		GFF3569	0.79	-0.5
3,613,911	-		GFF3569	0.81	+0.3
3,613,945	-				-1.0
3,613,959	+				-0.5
3,613,959	+				+0.1
3,613,959	-				-1.7
3,613,967	-				+0.3
3,613,969	+				+0.8
3,613,974	+				-0.2
3,613,974	+				-1.9
3,613,974	-				-0.4
3,613,974	-				-1.6
3,613,979	+				-0.5
3,613,982	-				-0.1
3,613,984	+				-1.2
3,613,992	-				-2.2
3,614,005	-				-0.7
3,614,006	-				+0.2
3,614,031	+				+0.4
3,614,033	+				-1.2
3,614,039	-				+0.2
3,614,039	-				+1.7
3,614,061	-		GFF3570	0.11	-1.2
3,614,061	-		GFF3570	0.11	+0.1
3,614,070	+		GFF3570	0.12	+0.3
3,614,070	+		GFF3570	0.12	+0.2
3,614,080	+		GFF3570	0.13	+1.3
3,614,085	+		GFF3570	0.14	-0.5
3,614,087	-		GFF3570	0.14	-0.2
3,614,088	-		GFF3570	0.14	-0.1
3,614,090	+		GFF3570	0.15	+0.8
3,614,090	+		GFF3570	0.15	-1.4
3,614,090	+		GFF3570	0.15	-0.2
3,614,090	+		GFF3570	0.15	-2.4
3,614,090	+		GFF3570	0.15	+0.5
3,614,090	+		GFF3570	0.15	-0.9
3,614,090	+		GFF3570	0.15	+0.6
3,614,090	+		GFF3570	0.15	-0.8
3,614,090	+		GFF3570	0.15	-0.2
3,614,093	-		GFF3570	0.15	+0.4
3,614,095	+		GFF3570	0.15	+0.2
3,614,095	+		GFF3570	0.15	+0.4
3,614,097	+		GFF3570	0.16	+0.5
3,614,098	-		GFF3570	0.16	-0.6
3,614,098	-		GFF3570	0.16	-0.4
3,614,098	-		GFF3570	0.16	-1.9
3,614,098	-		GFF3570	0.16	+0.4
3,614,098	-		GFF3570	0.16	-0.3
3,614,098	-		GFF3570	0.16	-1.2
3,614,098	-		GFF3570	0.16	+0.3
3,614,098	-		GFF3570	0.16	-0.3
3,614,098	-		GFF3570	0.16	-0.1
3,614,098	-		GFF3570	0.16	-0.4
3,614,098	-		GFF3570	0.16	-2.7
3,614,105	-		GFF3570	0.17	-1.2
3,614,105	-		GFF3570	0.17	-1.2
3,614,107	+		GFF3570	0.17	-1.2
3,614,107	+		GFF3570	0.17	-0.2
3,614,115	-		GFF3570	0.18	-1.7
3,614,134	+		GFF3570	0.20	-0.4
3,614,142	-		GFF3570	0.21	+0.7
3,614,143	+		GFF3570	0.22	-0.4
3,614,143	+		GFF3570	0.22	+0.0
3,614,149	-		GFF3570	0.22	-0.7
3,614,150	-		GFF3570	0.22	-0.4
3,614,155	-		GFF3570	0.23	+0.2
3,614,155	-		GFF3570	0.23	+1.6
3,614,162	+		GFF3570	0.24	+0.7
3,614,162	+		GFF3570	0.24	-0.4
3,614,162	+		GFF3570	0.24	-0.9
3,614,162	+		GFF3570	0.24	+0.9
3,614,162	+		GFF3570	0.24	+0.4
3,614,162	+		GFF3570	0.24	-1.4
3,614,165	-		GFF3570	0.24	-0.6
3,614,165	-		GFF3570	0.24	-0.1
3,614,167	+		GFF3570	0.25	-0.4
3,614,177	+		GFF3570	0.26	+0.8
3,614,179	+		GFF3570	0.26	+0.8
3,614,179	+		GFF3570	0.26	+0.8
3,614,188	+		GFF3570	0.27	-0.7
3,614,188	+		GFF3570	0.27	-0.6
3,614,198	+		GFF3570	0.29	-0.3
3,614,198	+		GFF3570	0.29	-1.3
3,614,201	-		GFF3570	0.29	-0.6
3,614,206	-		GFF3570	0.30	-0.2
3,614,206	-		GFF3570	0.30	-2.6
3,614,206	-		GFF3570	0.30	-1.8
3,614,211	-		GFF3570	0.30	+0.6
3,614,216	-		GFF3570	0.31	-0.3
3,614,225	+		GFF3570	0.32	-1.2
3,614,225	+		GFF3570	0.32	-2.4
3,614,230	+		GFF3570	0.33	-1.2
3,614,231	-		GFF3570	0.33	-0.5
3,614,233	-		GFF3570	0.33	-2.2
3,614,233	-		GFF3570	0.33	-0.1
3,614,233	-		GFF3570	0.33	-0.0
3,614,238	-		GFF3570	0.34	-0.2
3,614,252	-		GFF3570	0.36	-0.7
3,614,262	-		GFF3570	0.37	+0.2
3,614,268	-		GFF3570	0.38	-2.1
3,614,287	+		GFF3570	0.40	+1.4
3,614,301	+		GFF3570	0.42	-1.6
3,614,307	+		GFF3570	0.43	+0.7
3,614,309	+		GFF3570	0.43	-0.0
3,614,309	-		GFF3570	0.43	+0.7
3,614,309	-		GFF3570	0.43	-2.1
3,614,311	-		GFF3570	0.44	+0.7
3,614,315	-		GFF3570	0.44	-0.3
3,614,315	-		GFF3570	0.44	+0.9
3,614,322	+		GFF3570	0.45	-0.2
3,614,324	-		GFF3570	0.45	-1.6
3,614,324	-		GFF3570	0.45	-0.7
3,614,344	+		GFF3570	0.48	+1.1
3,614,344	+		GFF3570	0.48	-0.0
3,614,346	-		GFF3570	0.48	-0.4
3,614,347	-		GFF3570	0.48	-0.6
3,614,349	+		GFF3570	0.48	-0.1
3,614,349	+		GFF3570	0.48	-0.2
3,614,352	-		GFF3570	0.49	-0.8
3,614,357	-		GFF3570	0.50	-1.4
3,614,357	-		GFF3570	0.50	-0.6
3,614,357	-		GFF3570	0.50	-1.2
3,614,362	-		GFF3570	0.50	-1.5
3,614,365	+		GFF3570	0.51	+0.6
3,614,365	+		GFF3570	0.51	-0.1
3,614,373	-		GFF3570	0.52	-0.8
3,614,373	-		GFF3570	0.52	+0.4
3,614,384	+		GFF3570	0.53	-1.2
3,614,423	+		GFF3570	0.58	+0.2
3,614,431	-		GFF3570	0.59	-1.7
3,614,440	+		GFF3570	0.60	-0.4
3,614,440	+		GFF3570	0.60	-0.4
3,614,448	-		GFF3570	0.61	-0.3
3,614,448	-		GFF3570	0.61	+0.1
3,614,448	-		GFF3570	0.61	-1.2
3,614,457	-		GFF3570	0.63	+1.0
3,614,461	+		GFF3570	0.63	-0.3
3,614,476	-		GFF3570	0.65	-2.2
3,614,494	+		GFF3570	0.67	-2.3
3,614,500	-		GFF3570	0.68	+0.4
3,614,502	-		GFF3570	0.68	+0.4
3,614,502	-		GFF3570	0.68	-0.5
3,614,510	+		GFF3570	0.70	+0.7
3,614,516	+		GFF3570	0.70	-1.7
3,614,539	-		GFF3570	0.73	+0.1
3,614,541	+		GFF3570	0.74	+0.8
3,614,605	+		GFF3570	0.82	-0.7
3,614,656	-		GFF3570	0.89	-0.8
3,614,688	-				-2.2
3,614,707	-				+0.4
3,614,739	-				-1.9
3,614,771	+				-0.0
3,614,779	+				+0.4
3,614,787	-				-0.8
3,614,789	-				-0.5
3,614,814	-				-0.7
3,614,814	-				-0.9
3,614,814	-				+1.4
3,614,814	-				-2.0
3,614,814	-				-0.4
3,614,819	-				-0.9
3,614,823	+				+1.0
3,614,824	-				-0.1
3,614,831	-				-0.7
3,614,832	-				+0.8
3,614,833	-				-1.3
3,614,839	-				-0.0
3,614,848	-				-0.8
3,614,863	+				-0.6
3,614,871	-				-2.3
3,614,880	+				-1.4
3,614,893	-				+0.9
3,614,906	+				+0.4
3,614,906	+				+1.4
3,614,917	+				-0.4
3,614,924	+				-0.9
3,614,932	-				-0.9
3,614,934	+				-0.3
3,614,965	-				-1.3
3,614,966	-				-0.7
3,615,006	+				-1.2
3,615,026	+				-0.9
3,615,030	+				-1.5
3,615,031	+				-2.1
3,615,031	+				-1.8
3,615,039	-				-0.8
3,615,039	-				-0.2
3,615,041	+				-0.1
3,615,049	-				-0.0
3,615,049	-				+0.1
3,615,049	-				-0.5
3,615,049	-				-0.0
3,615,077	-				-0.1
3,615,082	-				-0.6
3,615,123	-				+0.1
3,615,123	-				-0.7
3,615,137	-				-1.0
3,615,164	+				+0.6
3,615,164	+				-0.2
3,615,164	+				-1.4
3,615,165	+				-2.2
3,615,172	-				+0.2
3,615,172	-				+0.3
3,615,172	-				-1.4
3,615,195	+				-0.5
3,615,205	+				-1.0
3,615,221	-				-0.1
3,615,234	-				+0.6
3,615,237	-				-0.1
3,615,239	+				+0.5
3,615,246	+				+0.4
3,615,246	-				-0.1
3,615,266	+				-0.1
3,615,274	+				+0.7
3,615,276	+				-2.3
3,615,276	+				-0.6
3,615,276	+				-1.4
3,615,285	+				-0.9
3,615,293	-				-2.4
3,615,303	-				+0.6
3,615,303	-				-1.2
3,615,317	-				+0.8
3,615,318	+				-0.2
3,615,319	-				+0.4
3,615,344	-				+0.1
3,615,346	+				-0.2
3,615,346	+				-1.5
3,615,354	-				-1.4
3,615,354	-				+1.2
3,615,359	+				-0.2
3,615,392	-				+0.8
3,615,394	+				-0.0
3,615,394	-				+0.2
3,615,396	+				+0.2
3,615,402	-				+0.4
3,615,405	-				-1.5
3,615,419	+				+0.1
3,615,448	-				-0.4
3,615,472	+				-0.1
3,615,478	+				-1.1
3,615,478	+				+1.2
3,615,478	+				+0.5
3,615,478	+				+0.1
3,615,500	+				-0.6
3,615,500	+				+1.2
3,615,508	+				-0.2
3,615,508	-				+0.5
3,615,508	-				-1.9
3,615,508	-				+1.3
3,615,513	+				-2.2
3,615,513	-				+1.0
3,615,537	+				+0.4
3,615,542	+		GFF3571	0.10	-1.6
3,615,542	+		GFF3571	0.10	+1.9
3,615,542	+		GFF3571	0.10	-1.4
3,615,542	+		GFF3571	0.10	+1.0
3,615,542	+		GFF3571	0.10	-1.6
3,615,542	+		GFF3571	0.10	-0.8
3,615,542	+		GFF3571	0.10	+0.8
3,615,542	+		GFF3571	0.10	-0.1
3,615,542	+		GFF3571	0.10	-0.2
3,615,542	+		GFF3571	0.10	+0.9
3,615,542	+		GFF3571	0.10	+0.5
3,615,542	+		GFF3571	0.10	+1.5
3,615,542	+		GFF3571	0.10	-0.6
3,615,542	+		GFF3571	0.10	-1.5
3,615,542	+		GFF3571	0.10	-1.5
3,615,542	+		GFF3571	0.10	-1.7
3,615,542	+		GFF3571	0.10	-0.2
3,615,542	+		GFF3571	0.10	-0.4
3,615,542	+		GFF3571	0.10	-1.6
3,615,547	+		GFF3571	0.10	-1.3
3,615,547	+		GFF3571	0.10	+0.1
3,615,547	+		GFF3571	0.10	-0.0
3,615,547	+		GFF3571	0.10	-0.2
3,615,547	+		GFF3571	0.10	+0.6
3,615,550	-		GFF3571	0.10	+0.7
3,615,550	-		GFF3571	0.10	+0.1
3,615,550	-		GFF3571	0.10	-0.8
3,615,550	-		GFF3571	0.10	-1.3
3,615,550	-		GFF3571	0.10	-0.3
3,615,550	-		GFF3571	0.10	-1.5
3,615,550	-		GFF3571	0.10	-0.5
3,615,550	-		GFF3571	0.10	-0.9
3,615,550	-		GFF3571	0.10	-0.4
3,615,550	-		GFF3571	0.10	-1.3
3,615,550	-		GFF3571	0.10	-0.0
3,615,550	-		GFF3571	0.10	-1.5
3,615,550	-		GFF3571	0.10	+1.2
3,615,550	-		GFF3571	0.10	+1.2
3,615,550	-		GFF3571	0.10	-1.1
3,615,550	-		GFF3571	0.10	-1.5
3,615,550	-		GFF3571	0.10	-1.6
3,615,550	-		GFF3571	0.10	-0.3
3,615,555	-		GFF3571	0.10	-0.6
3,615,555	-		GFF3571	0.10	-1.6
3,615,573	+		GFF3571	0.10	+0.3
3,615,581	-		GFF3571	0.11	-0.3
3,615,581	-		GFF3571	0.11	+0.2
3,615,583	+		GFF3571	0.11	-1.4
3,615,621	+		GFF3571	0.11	-0.4
3,615,634	+		GFF3571	0.11	+0.2
3,615,634	-		GFF3571	0.11	+0.7
3,615,648	-		GFF3571	0.11	+1.2
3,615,669	+		GFF3571	0.12	-0.9
3,615,679	+		GFF3571	0.12	-0.9
3,615,687	-		GFF3571	0.12	+0.4
3,615,690	+		GFF3571	0.12	+1.0
3,615,690	+		GFF3571	0.12	-0.9
3,615,690	+		GFF3571	0.12	-1.6
3,615,690	+		GFF3571	0.12	+0.3
3,615,698	-		GFF3571	0.12	+0.1
3,615,706	+		GFF3571	0.12	-1.8
3,615,706	+		GFF3571	0.12	+0.6
3,615,706	+		GFF3571	0.12	-1.6
3,615,731	+		GFF3571	0.12	+0.9
3,615,733	+		GFF3571	0.12	+0.5
3,615,739	-		GFF3571	0.13	-0.2
3,615,739	-		GFF3571	0.13	-0.4
3,615,739	-		GFF3571	0.13	-0.3
3,615,741	+		GFF3571	0.13	+0.6