Strain Fitness in Sphingobium sp. HT1-2 around GFF3553

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,597,583	+		GFF3552	0.79	-2.3
3,597,583	+		GFF3552	0.79	+0.9
3,597,591	-		GFF3552	0.82	+0.7
3,597,591	-		GFF3552	0.82	+0.6
3,597,591	-		GFF3552	0.82	-1.5
3,597,591	-		GFF3552	0.82	+1.3
3,597,596	-		GFF3552	0.84	+0.1
3,597,610	+		GFF3552	0.89	-1.3
3,597,618	-				+1.0
3,597,621	+				-0.9
3,597,627	+				-0.2
3,597,627	+				-1.0
3,597,627	-				-0.5
3,597,628	-				-1.9
3,597,632	+				+0.9
3,597,632	+				+0.5
3,597,632	+				-0.2
3,597,632	+				+0.3
3,597,632	+				+0.8
3,597,635	+				-0.5
3,597,635	-				+0.3
3,597,635	-				-0.1
3,597,636	-				+0.2
3,597,640	-				+0.1
3,597,640	-				+0.6
3,597,640	-				+1.2
3,597,640	-				+0.4
3,597,652	-				-1.1
3,597,667	+				-0.6
3,597,667	+				+1.6
3,597,686	+				-2.3
3,597,686	+				-0.4
3,597,686	+				-0.3
3,597,686	+				-1.4
3,597,686	+				+0.7
3,597,686	+				-0.3
3,597,686	+				+0.1
3,597,686	+				+1.4
3,597,686	+				-1.3
3,597,686	+				-0.1
3,597,686	+				+1.5
3,597,686	+				-1.9
3,597,686	+				-2.1
3,597,686	+				-1.1
3,597,694	-				-0.8
3,597,694	-				-0.1
3,597,694	-				+0.4
3,597,694	-				+0.2
3,597,694	-				+0.2
3,597,694	-				+1.7
3,597,694	-				+0.4
3,597,694	-				-1.7
3,597,694	-				+1.1
3,597,694	-				+0.6
3,597,694	-				+0.1
3,597,694	-				-1.1
3,597,702	-				+0.4
3,597,709	-				-1.6
3,597,709	-				+0.5
3,597,723	+				-1.5
3,597,729	-				-1.9
3,597,731	-				-0.2
3,597,733	-				-1.3
3,597,745	-				-0.1
3,597,754	+				-1.5
3,597,754	+				-0.3
3,597,754	-				+0.4
3,597,754	-				+1.1
3,597,754	-				-0.3
3,597,754	-				+1.1
3,597,754	-				-1.1
3,597,762	-				+1.1
3,597,762	-				+0.1
3,597,764	+				+0.1
3,597,764	+				-0.6
3,597,770	+				+0.2
3,597,770	+				-0.6
3,597,770	+				+0.0
3,597,770	+				+0.2
3,597,770	+				+0.8
3,597,770	+				-0.0
3,597,770	+				+0.3
3,597,770	+				-0.5
3,597,770	+				+0.1
3,597,770	+				+1.0
3,597,770	+				-0.1
3,597,770	+				-2.0
3,597,770	+				-0.8
3,597,770	+				-1.9
3,597,770	+				+0.1
3,597,770	+				+1.0
3,597,770	+				-0.1
3,597,770	+				-0.7
3,597,770	+				-1.3
3,597,770	+				+0.9
3,597,770	+				-0.1
3,597,770	+				-0.7
3,597,770	+				+0.4
3,597,770	+				-0.2
3,597,770	+				+0.2
3,597,770	+				-0.4
3,597,770	+				+0.9
3,597,770	+				-1.2
3,597,770	+				+1.4
3,597,770	+				-0.3
3,597,770	+				-0.9
3,597,770	+				-0.5
3,597,770	+				-1.3
3,597,770	+				-0.4
3,597,770	+				-1.1
3,597,770	+				-2.2
3,597,770	+				+1.3
3,597,770	+				+0.5
3,597,770	+				-0.4
3,597,770	+				-1.7
3,597,770	+				-0.7
3,597,770	+				-0.8
3,597,770	+				+1.7
3,597,770	+				-0.6
3,597,770	+				-0.9
3,597,770	+				-0.8
3,597,770	+				-1.7
3,597,770	+				-0.2
3,597,772	-				+0.4
3,597,778	-				+0.4
3,597,778	-				+0.5
3,597,778	-				+1.0
3,597,778	-				+1.3
3,597,778	-				+0.2
3,597,778	-				-0.6
3,597,778	-				+0.2
3,597,778	-				-0.1
3,597,778	-				-0.5
3,597,778	-				-0.1
3,597,778	-				-0.9
3,597,778	-				+1.1
3,597,778	-				+0.5
3,597,778	-				-2.5
3,597,778	-				+0.4
3,597,778	-				-1.4
3,597,778	-				+0.2
3,597,778	-				-0.1
3,597,778	-				+1.0
3,597,778	-				-0.3
3,597,778	-				+0.1
3,597,778	-				+0.4
3,597,778	-				+0.3
3,597,778	-				-0.5
3,597,778	-				+1.4
3,597,778	-				+0.4
3,597,778	-				+0.5
3,597,778	-				-1.7
3,597,778	-				-1.3
3,597,778	-				-0.1
3,597,778	-				-1.8
3,597,778	-				-1.9
3,597,778	-				+0.2
3,597,778	-				-0.5
3,597,778	-				+0.3
3,597,778	-				+0.6
3,597,778	-				-1.6
3,597,778	-				+0.3
3,597,778	-				+0.3
3,597,778	-				+0.8
3,597,778	-				-0.4
3,597,778	-				-0.1
3,597,778	-				+0.9
3,597,778	-				-1.4
3,597,778	-				+0.7
3,597,778	-				-0.1
3,597,778	-				-0.0
3,597,778	-				+0.4
3,597,778	-				+0.5
3,597,778	-				-0.2
3,597,778	-				+0.5
3,597,778	-				+0.4
3,597,778	-				-1.1
3,597,778	-				-0.7
3,597,778	-				-0.4
3,597,778	-				-0.1
3,597,778	-				-0.1
3,597,778	-				-2.8
3,597,778	-				-0.2
3,597,778	-				+0.4
3,597,778	-				+1.4
3,597,778	-				+0.3
3,597,778	-				+0.4
3,597,778	-				-0.5
3,597,778	-				-0.0
3,597,778	-				+1.9
3,597,778	-				+0.1
3,597,778	-				-0.4
3,597,778	-				-1.0
3,597,778	-				-0.2
3,597,778	-				-0.6
3,597,778	-				-0.7
3,597,778	-				+0.0
3,597,778	-				-0.6
3,597,778	-				+0.1
3,597,780	+				-1.0
3,597,780	+				-2.0
3,597,788	-				+0.3
3,597,795	-				+1.3
3,597,798	+				-0.4
3,597,812	-				-1.8
3,597,818	+				+1.9
3,597,818	+				+1.9
3,597,818	+				+1.0
3,597,821	-				-0.9
3,597,826	+				-1.6
3,597,826	-				+0.6
3,597,828	+				+0.3
3,597,836	+				-0.7
3,597,839	-				+0.6
3,597,856	+				+0.3
3,597,856	+				-0.1
3,597,864	-				+1.3
3,597,865	-				-0.9
3,597,867	-				-1.7
3,597,870	+				-2.1
3,597,878	-				-0.1
3,597,878	-				+0.7
3,597,883	-				+0.6
3,597,883	-				+1.4
3,597,888	-				-1.9
3,597,889	+				-0.5
3,597,899	+				+0.3
3,597,909	+				-0.6
3,597,920	+				-0.9
3,597,925	+				+0.9
3,597,925	+				-1.4
3,597,926	-				+1.0
3,597,928	-				-1.1
3,597,928	-				+0.2
3,597,937	+				-0.5
3,597,938	-				+0.5
3,597,940	-				-0.4
3,597,941	+				-1.9
3,597,945	-				+1.2
3,597,954	-				-1.4
3,597,956	+				+1.9
3,597,960	-				-0.2
3,597,991	+				-0.5
3,597,991	+				-0.1
3,597,991	+				+0.8
3,597,994	-				+1.2
3,598,025	-				+0.1
3,598,027	+				-1.6
3,598,027	+				-1.5
3,598,035	-				+2.2
3,598,035	-				-0.8
3,598,035	-				-0.6
3,598,035	-				-0.4
3,598,035	-				-0.4
3,598,038	-				-0.4
3,598,055	+				-1.9
3,598,073	+				-1.9
3,598,084	+				+1.2
3,598,106	+				-1.7
3,598,108	+				+1.9
3,598,114	-				-2.1
3,598,116	+				-1.3
3,598,121	+				-1.4
3,598,126	+				-1.3
3,598,127	-				+0.9
3,598,129	-				+0.1
3,598,134	-				+1.4
3,598,154	+				-0.7
3,598,159	+				-2.5
3,598,172	-				+0.0
3,598,175	+				-0.0
3,598,182	+				-2.7
3,598,182	+				-0.6
3,598,182	+				+0.3
3,598,182	+				-0.1
3,598,182	+				+1.1
3,598,182	-				+1.1
3,598,183	-				+1.6
3,598,190	-				+0.4
3,598,190	-				-0.6
3,598,190	-				-0.4
3,598,190	-				-1.0
3,598,190	-				-0.5
3,598,190	-				-0.5
3,598,190	-				+0.1
3,598,237	-				-1.3
3,598,247	-				-1.9
3,598,267	-				-0.8
3,598,277	-				-0.3
3,598,288	+				-1.4
3,598,304	-				-0.1
3,598,311	+				-1.6
3,598,335	+				-0.1
3,598,336	+				-0.0
3,598,338	+				-0.7
3,598,347	+				-1.3
3,598,348	+				-1.1
3,598,348	+				+0.2
3,598,348	+				-0.3
3,598,348	+				-0.3
3,598,348	+				+0.4
3,598,348	-				+0.1
3,598,356	-				-1.2
3,598,356	-				+0.4
3,598,362	+				-2.5
3,598,362	+				-1.1
3,598,362	+				+0.3
3,598,362	+				-0.8
3,598,362	+				+0.1
3,598,362	+				+0.8
3,598,364	+				-0.1
3,598,366	+				-0.4
3,598,370	-				-0.6
3,598,370	-				+1.0
3,598,370	-				+1.1
3,598,374	+				-2.1
3,598,374	+				+0.3
3,598,379	+				-0.9
3,598,381	-				+0.1
3,598,382	-				+0.6
3,598,382	-				+0.5
3,598,387	+				+1.0
3,598,396	-				+1.5
3,598,404	+				+0.4
3,598,408	-				+0.8
3,598,413	+				-1.3
3,598,414	-				+0.0
3,598,414	-				-0.9
3,598,416	+				-0.7
3,598,416	+				+0.8
3,598,418	+				-1.8
3,598,419	-				+0.5
3,598,420	-				-0.3
3,598,420	-				+0.7
3,598,421	-				-1.0
3,598,423	-				+0.3
3,598,424	-				+0.6
3,598,425	-				+0.5
3,598,426	-				-1.0
3,598,428	+				-1.0
3,598,431	-				-0.0
3,598,433	+				+0.6
3,598,434	-				-1.4
3,598,439	-				+0.4
3,598,439	-				-0.5
3,598,446	+				+0.9
3,598,446	+				-0.0
3,598,446	+				-1.1
3,598,446	+				-0.8
3,598,446	+				-0.3
3,598,446	+				+2.0
3,598,446	+				-1.9
3,598,447	-				-1.9
3,598,447	-				-0.9
3,598,447	-				+0.7
3,598,447	-				-1.5
3,598,449	-				+1.4
3,598,454	+				+0.9
3,598,454	+				+2.0
3,598,454	-				+1.0
3,598,454	-				+0.3
3,598,454	-				+0.6
3,598,454	-				+0.7
3,598,454	-				-1.1
3,598,454	-				-1.5
3,598,454	-				+0.3
3,598,454	-				+1.7
3,598,454	-				+0.4
3,598,454	-				-0.1
3,598,454	-				-0.3
3,598,459	-				+0.1
3,598,459	-				-0.6
3,598,463	-				-0.3
3,598,487	+				+0.5
3,598,490	-				+0.5
3,598,516	+				-0.3
3,598,516	+				-0.2
3,598,516	+				+1.6
3,598,516	+				+0.7
3,598,524	+				-1.1
3,598,524	-				-0.1
3,598,524	-				+1.2
3,598,529	+				-0.3
3,598,529	+				-2.3
3,598,537	-				-2.5
3,598,537	-				+0.7
3,598,547	+				+0.5
3,598,547	+				-1.9
3,598,559	+				+0.4
3,598,559	+				+0.2
3,598,561	+				-0.0
3,598,561	+				+2.0
3,598,561	+				+0.6
3,598,561	+				-0.3
3,598,561	+				-0.1
3,598,561	+				+1.2
3,598,567	-				-0.5
3,598,567	-				+1.0
3,598,567	-				-0.0
3,598,567	-				-0.5
3,598,569	-				+0.2
3,598,569	-				-0.1
3,598,569	-				+0.3
3,598,569	-				-1.9
3,598,573	+				+0.5
3,598,573	+				+0.5
3,598,589	+				+0.5
3,598,594	+				+0.5
3,598,617	+		GFF3553	0.12	+0.1
3,598,687	+		GFF3553	0.32	-1.1
3,598,698	-		GFF3553	0.35	-0.4
3,598,700	+		GFF3553	0.36	+1.0
3,598,700	+		GFF3553	0.36	-0.6
3,598,705	+		GFF3553	0.37	-0.1
3,598,706	-		GFF3553	0.38	+0.2
3,598,707	+		GFF3553	0.38	+0.7
3,598,707	+		GFF3553	0.38	-0.3
3,598,708	-		GFF3553	0.38	-0.9
3,598,708	-		GFF3553	0.38	+0.1
3,598,708	-		GFF3553	0.38	-1.0
3,598,712	+		GFF3553	0.40	-1.1
3,598,724	+		GFF3553	0.43	+0.5
3,598,724	+		GFF3553	0.43	-1.4
3,598,724	+		GFF3553	0.43	-0.4
3,598,726	+		GFF3553	0.44	-1.9
3,598,726	+		GFF3553	0.44	-0.0
3,598,726	+		GFF3553	0.44	-1.6
3,598,760	+		GFF3553	0.54	-0.5
3,598,760	+		GFF3553	0.54	-1.9
3,598,760	+		GFF3553	0.54	+0.5
3,598,767	+		GFF3553	0.56	+0.1
3,598,768	-		GFF3553	0.56	-1.9
3,598,774	+		GFF3553	0.58	+0.4
3,598,775	+		GFF3553	0.58	-2.5
3,598,775	+		GFF3553	0.58	-0.1
3,598,775	+		GFF3553	0.58	+0.4
3,598,775	+		GFF3553	0.58	-0.5
3,598,775	+		GFF3553	0.58	-0.1
3,598,775	+		GFF3553	0.58	-0.2
3,598,775	+		GFF3553	0.58	+0.9
3,598,775	+		GFF3553	0.58	-0.0
3,598,775	+		GFF3553	0.58	-1.9
3,598,775	+		GFF3553	0.58	-0.2
3,598,775	+		GFF3553	0.58	-1.4
3,598,775	+		GFF3553	0.58	-0.3
3,598,775	+		GFF3553	0.58	+1.3
3,598,775	+		GFF3553	0.58	+1.3
3,598,775	-		GFF3553	0.58	-0.6
3,598,781	-		GFF3553	0.60	+0.4
3,598,783	-		GFF3553	0.60	-0.6
3,598,783	-		GFF3553	0.60	+0.5
3,598,783	-		GFF3553	0.60	-1.9
3,598,783	-		GFF3553	0.60	-1.1
3,598,783	-		GFF3553	0.60	-0.8
3,598,783	-		GFF3553	0.60	-0.0
3,598,783	-		GFF3553	0.60	+0.5
3,598,783	-		GFF3553	0.60	+0.6
3,598,783	-		GFF3553	0.60	-1.9
3,598,795	+		GFF3553	0.64	+0.1
3,598,806	+		GFF3553	0.67	+1.8
3,598,828	-		GFF3553	0.74	+0.1
3,598,870	+		GFF3553	0.86	+0.2
3,598,887	+				-2.3
3,598,887	+				-0.9
3,598,895	-				+0.6
3,598,905	-				-0.1
3,598,910	+				-0.2
3,598,910	+				-0.7
3,598,910	+				+0.7
3,598,918	+				-1.3
3,598,918	-				+0.4
3,598,918	-				+0.5
3,598,918	-				-0.3
3,598,918	-				-1.0
3,598,918	-				+0.2
3,598,927	+				+1.2
3,598,928	-				+0.2
3,598,928	-				-0.9
3,598,935	-				-0.2
3,598,938	+				+0.4
3,598,938	+				+1.0
3,598,938	+				+0.5
3,598,955	-				-0.3
3,598,971	+				+1.2
3,598,973	+				+1.1
3,598,985	-				-1.4
3,598,987	+				+0.8
3,598,995	-				+0.4
3,598,997	+				+1.1
3,599,002	-				-1.5
3,599,002	-				-2.0
3,599,020	+				-0.3
3,599,020	+				-0.6
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