Strain Fitness in Sphingobium sp. HT1-2 around GFF349

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF348 and GFF349 overlap by 8 nucleotidesGFF349 and GFF350 are separated by 102 nucleotides GFF348 - Capsular polysaccharide export system protein KpsS, at 339,782 to 341,068 GFF348 GFF349 - Capsule polysaccharide export protein, at 341,061 to 342,737 GFF349 GFF350 - Capsular polysaccharide glycosyltransferase biosynthesis protein WcbB, at 342,840 to 344,135 GFF350 Position (kb) 341 342 343Strain fitness (log2 ratio) -2 -1 0 1 2at 340.108 kb on + strand, within GFF348at 340.116 kb on + strand, within GFF348at 340.116 kb on + strand, within GFF348at 340.116 kb on - strand, within GFF348at 340.117 kb on - strand, within GFF348at 340.119 kb on - strand, within GFF348at 340.124 kb on - strand, within GFF348at 340.124 kb on - strand, within GFF348at 340.131 kb on + strand, within GFF348at 340.156 kb on + strand, within GFF348at 340.156 kb on - strand, within GFF348at 340.164 kb on - strand, within GFF348at 340.203 kb on - strand, within GFF348at 340.230 kb on + strand, within GFF348at 340.264 kb on - strand, within GFF348at 340.281 kb on + strand, within GFF348at 340.313 kb on + strand, within GFF348at 340.321 kb on - strand, within GFF348at 340.321 kb on - strand, within GFF348at 340.328 kb on + strand, within GFF348at 340.331 kb on - strand, within GFF348at 340.336 kb on - strand, within GFF348at 340.391 kb on - strand, within GFF348at 340.412 kb on + strand, within GFF348at 340.425 kb on + strand, within GFF348at 340.426 kb on - strand, within GFF348at 340.459 kb on - strand, within GFF348at 340.533 kb on - strand, within GFF348at 340.561 kb on - strand, within GFF348at 340.565 kb on + strand, within GFF348at 340.565 kb on + strand, within GFF348at 340.573 kb on - strand, within GFF348at 340.573 kb on - strand, within GFF348at 340.580 kb on - strand, within GFF348at 340.650 kb on + strand, within GFF348at 340.657 kb on - strand, within GFF348at 340.657 kb on - strand, within GFF348at 340.658 kb on - strand, within GFF348at 340.660 kb on + strand, within GFF348at 340.750 kb on - strand, within GFF348at 340.750 kb on - strand, within GFF348at 340.750 kb on - strand, within GFF348at 340.750 kb on - strand, within GFF348at 340.781 kb on - strand, within GFF348at 340.812 kb on - strand, within GFF348at 340.861 kb on + strand, within GFF348at 340.921 kb on + strand, within GFF348at 340.988 kb on - strandat 341.066 kb on - strandat 341.072 kb on - strandat 341.098 kb on + strandat 341.183 kb on + strandat 341.191 kb on - strandat 341.205 kb on - strandat 341.218 kb on + strandat 341.230 kb on - strand, within GFF349at 341.242 kb on - strand, within GFF349at 341.301 kb on - strand, within GFF349at 341.324 kb on - strand, within GFF349at 341.324 kb on - strand, within GFF349at 341.334 kb on - strand, within GFF349at 341.334 kb on - strand, within GFF349at 341.340 kb on + strand, within GFF349at 341.340 kb on + strand, within GFF349at 341.342 kb on - strand, within GFF349at 341.348 kb on - strand, within GFF349at 341.349 kb on - strand, within GFF349at 341.359 kb on - strand, within GFF349at 341.364 kb on - strand, within GFF349at 341.383 kb on - strand, within GFF349at 341.485 kb on - strand, within GFF349at 341.498 kb on - strand, within GFF349at 341.563 kb on - strand, within GFF349at 341.605 kb on + strand, within GFF349at 341.638 kb on + strand, within GFF349at 341.657 kb on - strand, within GFF349at 341.657 kb on - strand, within GFF349at 341.693 kb on - strand, within GFF349at 341.717 kb on + strand, within GFF349at 341.725 kb on + strand, within GFF349at 341.763 kb on - strand, within GFF349at 341.804 kb on - strand, within GFF349at 341.804 kb on - strand, within GFF349at 341.807 kb on - strand, within GFF349at 341.822 kb on + strand, within GFF349at 341.830 kb on - strand, within GFF349at 341.830 kb on - strand, within GFF349at 341.830 kb on - strand, within GFF349at 341.832 kb on - strand, within GFF349at 341.852 kb on + strand, within GFF349at 341.860 kb on - strand, within GFF349at 341.868 kb on + strand, within GFF349at 341.910 kb on - strand, within GFF349at 341.914 kb on + strand, within GFF349at 341.924 kb on + strand, within GFF349at 341.977 kb on + strand, within GFF349at 342.039 kb on - strand, within GFF349at 342.184 kb on - strand, within GFF349at 342.199 kb on - strand, within GFF349at 342.238 kb on - strand, within GFF349at 342.247 kb on + strand, within GFF349at 342.255 kb on - strand, within GFF349at 342.255 kb on - strand, within GFF349at 342.255 kb on - strand, within GFF349at 342.262 kb on + strand, within GFF349at 342.270 kb on - strand, within GFF349at 342.301 kb on - strand, within GFF349at 342.301 kb on - strand, within GFF349at 342.329 kb on - strand, within GFF349at 342.338 kb on + strand, within GFF349at 342.376 kb on - strand, within GFF349at 342.381 kb on - strand, within GFF349at 342.421 kb on + strand, within GFF349at 342.421 kb on + strand, within GFF349at 342.429 kb on - strand, within GFF349at 342.429 kb on - strand, within GFF349at 342.438 kb on + strand, within GFF349at 342.532 kb on - strand, within GFF349at 342.540 kb on - strand, within GFF349at 342.587 kb on + strandat 342.621 kb on + strandat 342.629 kb on - strandat 342.681 kb on - strandat 342.722 kb on - strandat 342.722 kb on - strandat 342.744 kb on - strandat 342.747 kb on + strandat 342.749 kb on + strandat 342.751 kb on + strandat 342.764 kb on - strandat 342.765 kb on + strandat 342.769 kb on + strandat 342.769 kb on + strandat 342.769 kb on + strandat 342.769 kb on + strandat 342.774 kb on + strandat 342.777 kb on - strandat 342.777 kb on - strandat 342.784 kb on + strandat 342.784 kb on + strandat 342.792 kb on - strandat 342.792 kb on - strandat 342.792 kb on - strandat 342.792 kb on - strandat 342.792 kb on - strandat 342.812 kb on - strandat 342.814 kb on + strandat 342.846 kb on - strandat 342.854 kb on + strandat 342.858 kb on - strandat 342.908 kb on + strandat 343.000 kb on + strand, within GFF350at 343.010 kb on + strand, within GFF350at 343.048 kb on - strand, within GFF350at 343.124 kb on - strand, within GFF350at 343.161 kb on - strand, within GFF350at 343.227 kb on - strand, within GFF350at 343.276 kb on + strand, within GFF350at 343.297 kb on + strand, within GFF350at 343.305 kb on - strand, within GFF350at 343.338 kb on - strand, within GFF350at 343.392 kb on - strand, within GFF350at 343.427 kb on + strand, within GFF350at 343.427 kb on - strand, within GFF350at 343.435 kb on - strand, within GFF350at 343.472 kb on + strand, within GFF350at 343.480 kb on - strand, within GFF350at 343.504 kb on - strand, within GFF350at 343.558 kb on - strand, within GFF350at 343.558 kb on - strand, within GFF350at 343.590 kb on - strand, within GFF350at 343.605 kb on + strand, within GFF350at 343.627 kb on + strand, within GFF350at 343.683 kb on - strand, within GFF350at 343.685 kb on + strand, within GFF350at 343.688 kb on - strand, within GFF350at 343.695 kb on + strand, within GFF350at 343.708 kb on + strand, within GFF350at 343.735 kb on + strand, within GFF350at 343.735 kb on + strand, within GFF350

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with D-Glucose and Ammonium Sulfate
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340,108 + GFF348 0.25 -1.3
340,116 + GFF348 0.26 -1.4
340,116 + GFF348 0.26 +1.1
340,116 - GFF348 0.26 -1.5
340,117 - GFF348 0.26 -2.1
340,119 - GFF348 0.26 -1.5
340,124 - GFF348 0.27 -0.2
340,124 - GFF348 0.27 -0.5
340,131 + GFF348 0.27 -0.3
340,156 + GFF348 0.29 -1.2
340,156 - GFF348 0.29 -0.3
340,164 - GFF348 0.30 -0.3
340,203 - GFF348 0.33 -0.3
340,230 + GFF348 0.35 -1.3
340,264 - GFF348 0.37 -0.1
340,281 + GFF348 0.39 -1.8
340,313 + GFF348 0.41 -1.4
340,321 - GFF348 0.42 -0.1
340,321 - GFF348 0.42 -0.8
340,328 + GFF348 0.42 -0.2
340,331 - GFF348 0.43 -1.7
340,336 - GFF348 0.43 -2.5
340,391 - GFF348 0.47 -1.7
340,412 + GFF348 0.49 -1.4
340,425 + GFF348 0.50 -2.1
340,426 - GFF348 0.50 -1.2
340,459 - GFF348 0.53 -1.0
340,533 - GFF348 0.58 -0.1
340,561 - GFF348 0.61 -0.2
340,565 + GFF348 0.61 -0.9
340,565 + GFF348 0.61 +0.5
340,573 - GFF348 0.61 -0.1
340,573 - GFF348 0.61 +0.4
340,580 - GFF348 0.62 +0.3
340,650 + GFF348 0.67 -0.2
340,657 - GFF348 0.68 -0.6
340,657 - GFF348 0.68 -0.4
340,658 - GFF348 0.68 -0.9
340,660 + GFF348 0.68 -0.9
340,750 - GFF348 0.75 -0.1
340,750 - GFF348 0.75 -0.1
340,750 - GFF348 0.75 +0.4
340,750 - GFF348 0.75 -1.3
340,781 - GFF348 0.78 -1.1
340,812 - GFF348 0.80 -1.3
340,861 + GFF348 0.84 -1.4
340,921 + GFF348 0.89 +0.4
340,988 - -0.4
341,066 - -2.3
341,072 - -1.7
341,098 + -2.0
341,183 + -1.6
341,191 - -1.6
341,205 - -2.1
341,218 + -1.7
341,230 - GFF349 0.10 -0.3
341,242 - GFF349 0.11 -1.1
341,301 - GFF349 0.14 -0.3
341,324 - GFF349 0.16 +0.9
341,324 - GFF349 0.16 -1.4
341,334 - GFF349 0.16 +0.9
341,334 - GFF349 0.16 -0.4
341,340 + GFF349 0.17 +0.0
341,340 + GFF349 0.17 -1.4
341,342 - GFF349 0.17 -1.3
341,348 - GFF349 0.17 -0.7
341,349 - GFF349 0.17 +0.0
341,359 - GFF349 0.18 +0.3
341,364 - GFF349 0.18 -1.5
341,383 - GFF349 0.19 +0.3
341,485 - GFF349 0.25 -0.4
341,498 - GFF349 0.26 +0.2
341,563 - GFF349 0.30 +0.0
341,605 + GFF349 0.32 +0.8
341,638 + GFF349 0.34 +0.9
341,657 - GFF349 0.36 -0.3
341,657 - GFF349 0.36 -1.2
341,693 - GFF349 0.38 -1.2
341,717 + GFF349 0.39 -0.5
341,725 + GFF349 0.40 +0.5
341,763 - GFF349 0.42 -1.2
341,804 - GFF349 0.44 +0.2
341,804 - GFF349 0.44 -1.2
341,807 - GFF349 0.44 -1.6
341,822 + GFF349 0.45 -1.2
341,830 - GFF349 0.46 -1.2
341,830 - GFF349 0.46 -0.6
341,830 - GFF349 0.46 +0.0
341,832 - GFF349 0.46 +0.3
341,852 + GFF349 0.47 -1.3
341,860 - GFF349 0.48 -0.2
341,868 + GFF349 0.48 +1.3
341,910 - GFF349 0.51 +0.2
341,914 + GFF349 0.51 -1.7
341,924 + GFF349 0.51 +0.0
341,977 + GFF349 0.55 -1.6
342,039 - GFF349 0.58 -1.6
342,184 - GFF349 0.67 +0.4
342,199 - GFF349 0.68 +1.0
342,238 - GFF349 0.70 -1.4
342,247 + GFF349 0.71 -2.3
342,255 - GFF349 0.71 +0.0
342,255 - GFF349 0.71 +1.0
342,255 - GFF349 0.71 -1.3
342,262 + GFF349 0.72 -0.3
342,270 - GFF349 0.72 -0.6
342,301 - GFF349 0.74 -1.8
342,301 - GFF349 0.74 -0.3
342,329 - GFF349 0.76 +0.5
342,338 + GFF349 0.76 -0.7
342,376 - GFF349 0.78 +0.3
342,381 - GFF349 0.79 -0.4
342,421 + GFF349 0.81 -0.1
342,421 + GFF349 0.81 +0.5
342,429 - GFF349 0.82 -1.1
342,429 - GFF349 0.82 -1.8
342,438 + GFF349 0.82 -1.6
342,532 - GFF349 0.88 -0.7
342,540 - GFF349 0.88 -0.6
342,587 + -1.9
342,621 + -0.4
342,629 - +0.7
342,681 - -1.7
342,722 - -1.4
342,722 - +2.1
342,744 - -1.3
342,747 + -0.5
342,749 + -1.1
342,751 + +0.3
342,764 - +0.0
342,765 + -0.2
342,769 + -1.1
342,769 + -0.1
342,769 + -0.9
342,769 + -0.3
342,774 + -0.9
342,777 - -0.2
342,777 - +0.1
342,784 + +0.2
342,784 + -0.2
342,792 - -2.4
342,792 - +1.3
342,792 - -2.1
342,792 - -1.3
342,792 - -1.2
342,812 - -2.2
342,814 + +0.3
342,846 - -1.3
342,854 + +0.7
342,858 - -1.1
342,908 + -1.5
343,000 + GFF350 0.12 -0.8
343,010 + GFF350 0.13 +0.4
343,048 - GFF350 0.16 +0.4
343,124 - GFF350 0.22 -1.2
343,161 - GFF350 0.25 -1.3
343,227 - GFF350 0.30 +0.7
343,276 + GFF350 0.34 -0.7
343,297 + GFF350 0.35 -1.1
343,305 - GFF350 0.36 -1.3
343,338 - GFF350 0.38 -1.5
343,392 - GFF350 0.43 -1.7
343,427 + GFF350 0.45 -1.2
343,427 - GFF350 0.45 -1.2
343,435 - GFF350 0.46 -0.6
343,472 + GFF350 0.49 -1.2
343,480 - GFF350 0.49 -1.4
343,504 - GFF350 0.51 -0.3
343,558 - GFF350 0.55 -1.3
343,558 - GFF350 0.55 -1.3
343,590 - GFF350 0.58 -1.2
343,605 + GFF350 0.59 +0.2
343,627 + GFF350 0.61 -0.4
343,683 - GFF350 0.65 -1.5
343,685 + GFF350 0.65 -1.6
343,688 - GFF350 0.65 -1.4
343,695 + GFF350 0.66 +0.8
343,708 + GFF350 0.67 -1.4
343,735 + GFF350 0.69 +0.0
343,735 + GFF350 0.69 +0.2

Or see this region's nucleotide sequence