Strain Fitness in Sphingobium sp. HT1-2 around GFF3475

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,512,877	-				-0.3
3,512,901	-		GFF3473	0.12	+0.6
3,512,956	-		GFF3473	0.29	-1.5
3,512,981	-		GFF3473	0.37	-0.1
3,513,018	-		GFF3473	0.48	+0.4
3,513,023	-		GFF3473	0.50	-1.3
3,513,042	-		GFF3473	0.56	+0.4
3,513,042	-		GFF3473	0.56	-0.6
3,513,073	-		GFF3473	0.65	-0.2
3,513,090	-		GFF3473	0.70	+0.6
3,513,090	-		GFF3473	0.70	+1.0
3,513,098	-		GFF3473	0.73	+0.3
3,513,100	-		GFF3473	0.73	-0.6
3,513,104	-		GFF3473	0.75	+0.3
3,513,108	-		GFF3473	0.76	+0.3
3,513,108	-		GFF3473	0.76	-0.7
3,513,162	-				+0.1
3,513,167	-				-0.5
3,513,171	-				-1.4
3,513,193	-				-1.0
3,513,201	-				-0.6
3,513,201	-				-0.1
3,513,233	-				+0.5
3,513,255	-				-0.2
3,513,286	+				+0.2
3,513,288	+				-0.2
3,513,290	+				+0.6
3,513,306	+				-0.9
3,513,306	+				-1.8
3,513,311	+				-0.3
3,513,311	+				+0.9
3,513,314	-				-1.8
3,513,314	-				+0.2
3,513,319	-				-2.6
3,513,364	+				+0.0
3,513,364	+				+0.2
3,513,372	-				-0.7
3,513,387	+				+0.7
3,513,395	-				+0.5
3,513,408	+		GFF3474	0.13	-0.7
3,513,416	-		GFF3474	0.15	-1.4
3,513,416	-		GFF3474	0.15	+1.6
3,513,429	-		GFF3474	0.19	-0.4
3,513,429	-		GFF3474	0.19	+0.5
3,513,438	+		GFF3474	0.21	+0.9
3,513,438	+		GFF3474	0.21	-0.6
3,513,438	+		GFF3474	0.21	+0.1
3,513,438	+		GFF3474	0.21	-1.0
3,513,438	+		GFF3474	0.21	+1.5
3,513,438	+		GFF3474	0.21	-0.5
3,513,438	+		GFF3474	0.21	+1.0
3,513,438	+		GFF3474	0.21	-1.6
3,513,438	+		GFF3474	0.21	+1.8
3,513,438	+		GFF3474	0.21	-1.3
3,513,438	+		GFF3474	0.21	-1.9
3,513,446	-		GFF3474	0.23	+1.4
3,513,446	-		GFF3474	0.23	+0.9
3,513,446	-		GFF3474	0.23	-0.4
3,513,446	-		GFF3474	0.23	-0.8
3,513,446	-		GFF3474	0.23	-0.5
3,513,446	-		GFF3474	0.23	-0.2
3,513,446	-		GFF3474	0.23	-0.1
3,513,446	-		GFF3474	0.23	-1.2
3,513,446	-		GFF3474	0.23	+0.4
3,513,451	-		GFF3474	0.25	-0.7
3,513,454	+		GFF3474	0.26	+1.1
3,513,455	-		GFF3474	0.26	+0.3
3,513,456	-		GFF3474	0.26	+1.3
3,513,456	-		GFF3474	0.26	+0.9
3,513,465	-		GFF3474	0.28	-0.6
3,513,472	-		GFF3474	0.30	+0.1
3,513,480	-		GFF3474	0.33	+0.1
3,513,480	-		GFF3474	0.33	+0.3
3,513,480	-		GFF3474	0.33	-0.5
3,513,500	+		GFF3474	0.38	-1.5
3,513,503	-		GFF3474	0.39	-0.4
3,513,503	-		GFF3474	0.39	+0.4
3,513,508	-		GFF3474	0.40	+0.4
3,513,508	-		GFF3474	0.40	+0.7
3,513,516	-		GFF3474	0.42	+1.9
3,513,532	+		GFF3474	0.47	+1.1
3,513,532	+		GFF3474	0.47	+1.6
3,513,535	-		GFF3474	0.47	+0.8
3,513,536	+		GFF3474	0.48	+1.4
3,513,540	-		GFF3474	0.49	-0.4
3,513,540	-		GFF3474	0.49	-0.4
3,513,544	-		GFF3474	0.50	-1.5
3,513,544	-		GFF3474	0.50	-0.0
3,513,544	-		GFF3474	0.50	-0.6
3,513,553	+		GFF3474	0.52	-0.4
3,513,581	-		GFF3474	0.60	+0.4
3,513,634	+		GFF3474	0.74	-1.0
3,513,666	+		GFF3474	0.83	+0.1
3,513,671	+		GFF3474	0.84	-0.1
3,513,671	+		GFF3474	0.84	+0.2
3,513,671	+		GFF3474	0.84	-2.0
3,513,671	+		GFF3474	0.84	-0.1
3,513,672	+		GFF3474	0.84	-1.0
3,513,672	+		GFF3474	0.84	-1.3
3,513,672	+		GFF3474	0.84	+0.1
3,513,672	+		GFF3474	0.84	+0.1
3,513,672	+		GFF3474	0.84	-0.5
3,513,672	+		GFF3474	0.84	-0.0
3,513,672	+		GFF3474	0.84	+0.3
3,513,672	+		GFF3474	0.84	-1.5
3,513,672	+		GFF3474	0.84	+0.8
3,513,672	+		GFF3474	0.84	+0.1
3,513,672	+		GFF3474	0.84	-0.0
3,513,672	+		GFF3474	0.84	+0.6
3,513,672	+		GFF3474	0.84	-1.5
3,513,672	+		GFF3474	0.84	-0.1
3,513,672	+		GFF3474	0.84	-1.0
3,513,672	+		GFF3474	0.84	+0.7
3,513,672	+		GFF3474	0.84	-0.4
3,513,672	+		GFF3474	0.84	+1.1
3,513,674	-		GFF3474	0.85	-0.8
3,513,677	-		GFF3474	0.85	+0.2
3,513,679	-		GFF3474	0.86	-0.5
3,513,680	-		GFF3474	0.86	-0.0
3,513,680	-		GFF3474	0.86	-0.9
3,513,680	-		GFF3474	0.86	+1.1
3,513,680	-		GFF3474	0.86	-0.0
3,513,680	-		GFF3474	0.86	-0.2
3,513,680	-		GFF3474	0.86	+0.2
3,513,680	-		GFF3474	0.86	+0.1
3,513,680	-		GFF3474	0.86	-0.7
3,513,680	-		GFF3474	0.86	-1.5
3,513,680	-		GFF3474	0.86	-1.2
3,513,680	-		GFF3474	0.86	-1.1
3,513,680	-		GFF3474	0.86	+0.4
3,513,680	-		GFF3474	0.86	+1.1
3,513,680	-		GFF3474	0.86	+0.3
3,513,680	-		GFF3474	0.86	+0.4
3,513,680	-		GFF3474	0.86	+0.9
3,513,680	-		GFF3474	0.86	+0.1
3,513,680	-		GFF3474	0.86	-0.2
3,513,680	-		GFF3474	0.86	-0.2
3,513,680	-		GFF3474	0.86	+0.8
3,513,680	-		GFF3474	0.86	+0.4
3,513,680	-		GFF3474	0.86	+0.0
3,513,680	-		GFF3474	0.86	+0.5
3,513,680	-		GFF3474	0.86	-0.6
3,513,680	-		GFF3474	0.86	+1.3
3,513,687	+		GFF3474	0.88	+0.0
3,513,692	+		GFF3474	0.90	-2.2
3,513,695	-				+0.4
3,513,697	+				+0.3
3,513,697	+				-0.2
3,513,697	+				-1.5
3,513,697	+				-1.6
3,513,697	+				+0.2
3,513,700	-				+0.2
3,513,700	-				-0.5
3,513,700	-				+0.1
3,513,705	-				-0.7
3,513,705	-				+0.4
3,513,705	-				-0.3
3,513,705	-				+0.5
3,513,705	-				+0.3
3,513,705	-				+0.4
3,513,705	-				+0.8
3,513,705	-				-0.8
3,513,707	+				-1.2
3,513,707	+				+0.1
3,513,707	+				-1.5
3,513,707	+				+1.4
3,513,707	+				+0.6
3,513,707	+				-0.6
3,513,707	+				-0.3
3,513,712	+				+0.5
3,513,713	-				-0.5
3,513,715	-				+1.3
3,513,715	-				+1.1
3,513,715	-				+0.3
3,513,715	-				+0.4
3,513,715	-				-1.8
3,513,715	-				+0.8
3,513,715	-				-1.5
3,513,715	-				-1.2
3,513,720	-				+0.4
3,513,727	+				+0.4
3,513,735	-				-0.4
3,513,735	-				-1.1
3,513,770	-		GFF3475	0.15	-0.5
3,513,777	+		GFF3475	0.19	-2.1
3,513,828	+		GFF3475	0.46	-0.7
3,513,834	+		GFF3475	0.49	+0.2
3,513,835	-		GFF3475	0.49	-0.9
3,513,836	-		GFF3475	0.50	+0.4
3,513,860	+		GFF3475	0.62	+1.1
3,513,860	+		GFF3475	0.62	+0.4
3,513,860	+		GFF3475	0.62	-0.5
3,513,865	+		GFF3475	0.65	+0.8
3,513,865	+		GFF3475	0.65	+0.1
3,513,868	-		GFF3475	0.67	+0.3
3,513,868	-		GFF3475	0.67	-0.3
3,513,868	-		GFF3475	0.67	+0.6
3,513,870	+		GFF3475	0.68	-0.0
3,513,873	-		GFF3475	0.69	+0.5
3,513,875	+		GFF3475	0.70	-0.1
3,513,878	-		GFF3475	0.72	-0.5
3,513,878	-		GFF3475	0.72	-3.2
3,513,883	-		GFF3475	0.75	-1.4
3,513,888	-		GFF3475	0.77	+0.7
3,513,893	-		GFF3475	0.80	+0.5
3,513,903	-		GFF3475	0.85	-0.6
3,514,004	+				-0.5
3,514,034	+				+0.9
3,514,042	+				-0.8
3,514,044	+				-0.1
3,514,044	+				+0.6
3,514,044	-				-1.5
3,514,044	-				-0.9
3,514,048	+				-0.1
3,514,052	-				-0.5
3,514,069	+				+0.2
3,514,069	+				+0.3
3,514,071	+				-1.1
3,514,077	-				-0.8
3,514,077	-				-1.4
3,514,077	-				-1.6
3,514,077	-				-0.9
3,514,077	-				+0.3
3,514,077	-				+1.0
3,514,121	+				-0.6
3,514,121	+				+0.3
3,514,134	+				+1.0
3,514,140	+				+0.4
3,514,200	+				-0.2
3,514,200	+				-0.6
3,514,200	+				+0.0
3,514,200	+				+0.2
3,514,206	-				-0.4
3,514,206	-				+0.2
3,514,208	-				-0.2
3,514,215	+				-2.5
3,514,216	-				+0.7
3,514,225	+				-0.2
3,514,228	-				+0.6
3,514,240	+				-2.0
3,514,253	-		GFF3476	0.10	-0.0
3,514,291	+		GFF3476	0.11	-1.3
3,514,297	+		GFF3476	0.11	-1.8
3,514,309	+		GFF3476	0.12	-1.3
3,514,309	+		GFF3476	0.12	-1.7
3,514,323	+		GFF3476	0.12	+1.4
3,514,339	+		GFF3476	0.13	-0.1
3,514,339	+		GFF3476	0.13	-0.9
3,514,339	+		GFF3476	0.13	-0.5
3,514,339	+		GFF3476	0.13	+0.5
3,514,339	+		GFF3476	0.13	-0.5
3,514,339	+		GFF3476	0.13	-0.9
3,514,339	+		GFF3476	0.13	-0.5
3,514,339	+		GFF3476	0.13	-1.5
3,514,339	+		GFF3476	0.13	-0.2
3,514,339	+		GFF3476	0.13	-0.2
3,514,342	-		GFF3476	0.13	-0.1
3,514,342	-		GFF3476	0.13	-0.1
3,514,344	+		GFF3476	0.13	-0.2
3,514,344	+		GFF3476	0.13	-0.0
3,514,344	+		GFF3476	0.13	+0.2
3,514,344	+		GFF3476	0.13	+0.0
3,514,344	+		GFF3476	0.13	+0.3
3,514,344	+		GFF3476	0.13	+0.5
3,514,347	-		GFF3476	0.13	-0.6
3,514,347	-		GFF3476	0.13	+0.4
3,514,347	-		GFF3476	0.13	+0.8
3,514,347	-		GFF3476	0.13	-0.2
3,514,347	-		GFF3476	0.13	-0.9
3,514,347	-		GFF3476	0.13	-0.1
3,514,347	-		GFF3476	0.13	-1.1
3,514,347	-		GFF3476	0.13	-1.0
3,514,347	-		GFF3476	0.13	-1.4
3,514,352	-		GFF3476	0.13	-0.1
3,514,352	-		GFF3476	0.13	-0.5
3,514,352	-		GFF3476	0.13	+1.1
3,514,352	-		GFF3476	0.13	-0.7
3,514,352	-		GFF3476	0.13	+0.1
3,514,352	-		GFF3476	0.13	+0.5
3,514,355	-		GFF3476	0.13	-2.2
3,514,356	+		GFF3476	0.13	-1.2
3,514,357	-		GFF3476	0.13	-0.8
3,514,364	-		GFF3476	0.13	-0.0
3,514,402	+		GFF3476	0.15	-1.7
3,514,402	+		GFF3476	0.15	-0.0
3,514,402	+		GFF3476	0.15	+0.4
3,514,404	-		GFF3476	0.15	-0.7
3,514,404	-		GFF3476	0.15	-0.7
3,514,405	-		GFF3476	0.15	+0.3
3,514,410	-		GFF3476	0.15	-0.9
3,514,417	+		GFF3476	0.15	-2.4
3,514,417	+		GFF3476	0.15	-0.1
3,514,417	+		GFF3476	0.15	-0.5
3,514,417	+		GFF3476	0.15	+0.2
3,514,423	-		GFF3476	0.15	+0.4
3,514,425	+		GFF3476	0.15	-0.2
3,514,425	-		GFF3476	0.15	+0.9
3,514,425	-		GFF3476	0.15	-0.5
3,514,425	-		GFF3476	0.15	+0.4
3,514,459	+		GFF3476	0.16	-0.8
3,514,459	+		GFF3476	0.16	-0.4
3,514,464	+		GFF3476	0.17	+0.2
3,514,472	+		GFF3476	0.17	+0.1
3,514,474	+		GFF3476	0.17	+0.7
3,514,477	-		GFF3476	0.17	-1.3
3,514,495	-		GFF3476	0.18	-0.1
3,514,507	-		GFF3476	0.18	-1.0
3,514,530	-		GFF3476	0.19	-1.3
3,514,550	-		GFF3476	0.19	-1.4
3,514,586	-		GFF3476	0.20	-0.1
3,514,586	-		GFF3476	0.20	-0.6
3,514,608	+		GFF3476	0.21	-0.4
3,514,615	+		GFF3476	0.21	-1.8
3,514,663	+		GFF3476	0.23	+0.5
3,514,676	-		GFF3476	0.23	+1.6
3,514,676	-		GFF3476	0.23	+0.6
3,514,682	+		GFF3476	0.23	+0.0
3,514,695	-		GFF3476	0.24	-0.7
3,514,695	-		GFF3476	0.24	-1.5
3,514,732	+		GFF3476	0.25	-1.3
3,514,732	+		GFF3476	0.25	-0.5
3,514,737	+		GFF3476	0.25	+0.8
3,514,754	+		GFF3476	0.26	+0.1
3,514,769	+		GFF3476	0.26	+0.6
3,514,777	+		GFF3476	0.26	-1.6
3,514,785	-		GFF3476	0.26	-1.0
3,514,787	+		GFF3476	0.27	+0.5
3,514,787	+		GFF3476	0.27	+1.1
3,514,795	-		GFF3476	0.27	+0.3
3,514,795	-		GFF3476	0.27	+0.0
3,514,795	-		GFF3476	0.27	-0.3
3,514,800	+		GFF3476	0.27	-0.5
3,514,800	+		GFF3476	0.27	-0.5
3,514,804	+		GFF3476	0.27	-1.0
3,514,808	-		GFF3476	0.27	-0.3
3,514,817	-		GFF3476	0.27	+0.2
3,514,824	-		GFF3476	0.28	-1.5
3,514,824	-		GFF3476	0.28	+0.1
3,514,835	+		GFF3476	0.28	-0.0
3,514,858	+		GFF3476	0.29	-2.2
3,514,858	+		GFF3476	0.29	+1.2
3,514,866	-		GFF3476	0.29	-1.5
3,514,883	+		GFF3476	0.30	-0.0
3,514,883	+		GFF3476	0.30	-0.6
3,514,883	+		GFF3476	0.30	+0.5
3,514,883	+		GFF3476	0.30	+0.1
3,514,883	+		GFF3476	0.30	+0.7
3,514,883	+		GFF3476	0.30	+0.7
3,514,883	+		GFF3476	0.30	-0.4
3,514,883	+		GFF3476	0.30	+0.4
3,514,883	+		GFF3476	0.30	-0.1
3,514,883	+		GFF3476	0.30	+0.4
3,514,891	-		GFF3476	0.30	-1.4
3,514,891	-		GFF3476	0.30	+0.1
3,514,891	-		GFF3476	0.30	-1.2
3,514,891	-		GFF3476	0.30	+1.9
3,514,891	-		GFF3476	0.30	+0.3
3,514,891	-		GFF3476	0.30	-0.3
3,514,902	+		GFF3476	0.30	-1.7
3,514,902	+		GFF3476	0.30	-1.6
3,514,902	+		GFF3476	0.30	-1.5
3,514,910	-		GFF3476	0.30	+1.1