Strain Fitness in Sphingobium sp. HT1-2 around GFF3463

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,502,731	+				-0.6
3,502,731	+				-0.9
3,502,739	-				+0.2
3,502,761	-				-0.2
3,502,781	-				+1.1
3,502,788	-				+0.3
3,502,788	-				-1.2
3,502,830	+				-0.0
3,502,830	-				-0.2
3,502,835	+				+1.4
3,502,838	-				-1.4
3,502,838	-				-2.4
3,502,838	-				+0.8
3,502,838	-				-0.7
3,502,841	+				-0.3
3,502,875	+				+0.6
3,502,875	+				+0.0
3,502,883	-				-0.2
3,502,883	-				-0.1
3,502,883	-				-0.5
3,502,883	-				+0.0
3,502,883	-				+0.5
3,502,886	-				-0.2
3,502,886	-				-0.4
3,502,886	-				-1.6
3,502,897	+				+0.5
3,502,919	+				+0.1
3,502,934	+				+0.6
3,502,937	-		GFF3462	0.10	-1.5
3,502,941	+		GFF3462	0.11	+1.4
3,502,942	-		GFF3462	0.11	-2.3
3,502,944	+		GFF3462	0.11	-0.9
3,502,947	-		GFF3462	0.11	+0.2
3,502,952	-		GFF3462	0.12	-0.2
3,502,988	+		GFF3462	0.16	-0.1
3,503,013	+		GFF3462	0.19	-0.4
3,503,017	+		GFF3462	0.19	+0.5
3,503,025	-		GFF3462	0.20	-0.8
3,503,031	+		GFF3462	0.21	+0.2
3,503,048	+		GFF3462	0.23	+1.1
3,503,056	-		GFF3462	0.24	-0.6
3,503,056	-		GFF3462	0.24	+1.1
3,503,073	+		GFF3462	0.25	+1.4
3,503,073	-		GFF3462	0.25	-1.9
3,503,077	+		GFF3462	0.26	+1.8
3,503,081	-		GFF3462	0.26	+0.2
3,503,081	-		GFF3462	0.26	-1.5
3,503,100	+		GFF3462	0.28	-1.4
3,503,105	+		GFF3462	0.29	+0.1
3,503,105	+		GFF3462	0.29	+0.4
3,503,105	+		GFF3462	0.29	-0.5
3,503,105	+		GFF3462	0.29	-2.5
3,503,105	+		GFF3462	0.29	+0.3
3,503,105	+		GFF3462	0.29	-2.6
3,503,105	+		GFF3462	0.29	+0.2
3,503,105	+		GFF3462	0.29	-2.0
3,503,105	+		GFF3462	0.29	-0.6
3,503,105	+		GFF3462	0.29	-0.0
3,503,105	+		GFF3462	0.29	+0.1
3,503,105	+		GFF3462	0.29	-1.6
3,503,105	+		GFF3462	0.29	+0.1
3,503,105	+		GFF3462	0.29	-0.3
3,503,105	+		GFF3462	0.29	-2.2
3,503,105	+		GFF3462	0.29	+1.7
3,503,113	-		GFF3462	0.30	+0.3
3,503,113	-		GFF3462	0.30	+1.1
3,503,113	-		GFF3462	0.30	-1.4
3,503,113	-		GFF3462	0.30	+0.7
3,503,113	-		GFF3462	0.30	-0.6
3,503,113	-		GFF3462	0.30	+1.4
3,503,113	-		GFF3462	0.30	+0.7
3,503,113	-		GFF3462	0.30	+0.4
3,503,113	-		GFF3462	0.30	-0.0
3,503,113	-		GFF3462	0.30	-0.9
3,503,113	-		GFF3462	0.30	-0.3
3,503,113	-		GFF3462	0.30	-0.0
3,503,113	-		GFF3462	0.30	-0.6
3,503,113	-		GFF3462	0.30	-1.5
3,503,113	-		GFF3462	0.30	-0.0
3,503,113	-		GFF3462	0.30	-1.3
3,503,119	+		GFF3462	0.31	+0.8
3,503,137	-		GFF3462	0.33	-0.2
3,503,137	-		GFF3462	0.33	-1.0
3,503,137	-		GFF3462	0.33	-1.3
3,503,137	-		GFF3462	0.33	+0.3
3,503,137	-		GFF3462	0.33	+1.2
3,503,137	-		GFF3462	0.33	+0.8
3,503,137	-		GFF3462	0.33	+0.0
3,503,137	-		GFF3462	0.33	+1.2
3,503,153	-		GFF3462	0.34	+0.7
3,503,153	-		GFF3462	0.34	+1.0
3,503,159	-		GFF3462	0.35	+0.4
3,503,161	+		GFF3462	0.35	-0.9
3,503,169	-		GFF3462	0.36	+0.5
3,503,221	+		GFF3462	0.42	+0.7
3,503,249	+		GFF3462	0.45	+1.5
3,503,262	-		GFF3462	0.47	+0.3
3,503,265	+		GFF3462	0.47	+1.1
3,503,265	+		GFF3462	0.47	-1.0
3,503,273	-		GFF3462	0.48	+1.5
3,503,273	-		GFF3462	0.48	+0.4
3,503,273	-		GFF3462	0.48	-0.8
3,503,273	-		GFF3462	0.48	-0.9
3,503,273	-		GFF3462	0.48	-0.5
3,503,273	-		GFF3462	0.48	-0.5
3,503,273	-		GFF3462	0.48	+0.4
3,503,281	-		GFF3462	0.49	-0.7
3,503,283	+		GFF3462	0.49	-1.5
3,503,287	+		GFF3462	0.50	+0.6
3,503,291	-		GFF3462	0.50	-0.2
3,503,296	-		GFF3462	0.51	+0.2
3,503,324	+		GFF3462	0.54	+0.2
3,503,329	+		GFF3462	0.54	+0.1
3,503,417	+		GFF3462	0.64	-1.8
3,503,417	+		GFF3462	0.64	+0.4
3,503,425	-		GFF3462	0.65	-2.2
3,503,427	+		GFF3462	0.65	-2.2
3,503,448	+		GFF3462	0.68	+0.4
3,503,459	-		GFF3462	0.69	-0.0
3,503,468	-		GFF3462	0.70	+0.7
3,503,476	-		GFF3462	0.71	+0.9
3,503,478	-		GFF3462	0.71	-0.3
3,503,500	+		GFF3462	0.74	+1.8
3,503,510	+		GFF3462	0.75	-1.0
3,503,515	-		GFF3462	0.75	-1.0
3,503,515	-		GFF3462	0.75	+0.8
3,503,515	-		GFF3462	0.75	+0.6
3,503,518	-		GFF3462	0.76	+0.4
3,503,518	-		GFF3462	0.76	-0.5
3,503,531	+		GFF3462	0.77	-0.6
3,503,531	+		GFF3462	0.77	-0.4
3,503,539	-		GFF3462	0.78	+0.2
3,503,539	-		GFF3462	0.78	+0.6
3,503,546	+		GFF3462	0.79	+0.0
3,503,548	+		GFF3462	0.79	-2.0
3,503,607	+		GFF3462	0.86	+0.3
3,503,615	-		GFF3462	0.86	-0.1
3,503,625	-		GFF3462	0.88	-0.9
3,503,659	+				-0.3
3,503,667	-				+1.7
3,503,728	+				-0.7
3,503,728	+				-0.4
3,503,731	-				-0.3
3,503,731	-				+0.4
3,503,731	-				+0.1
3,503,733	+				-1.0
3,503,736	-				-1.5
3,503,736	-				-1.6
3,503,736	-				+1.9
3,503,749	+				-0.6
3,503,757	-				-0.4
3,503,758	+				+1.3
3,503,789	+				+0.1
3,503,789	+				-0.1
3,503,789	+				-0.4
3,503,789	+				-0.9
3,503,789	+				-1.0
3,503,789	+				-0.7
3,503,789	+				-0.3
3,503,789	+				+0.8
3,503,794	+				+0.1
3,503,797	-				+0.6
3,503,797	-				-1.5
3,503,797	-				-0.1
3,503,797	-				+1.9
3,503,797	-				+0.8
3,503,797	-				-0.4
3,503,797	-				-1.2
3,503,838	-				-0.2
3,503,850	+				-1.2
3,503,850	+				+1.1
3,503,850	+				-0.0
3,503,857	+				-1.2
3,503,858	-				-1.0
3,503,865	-				+0.1
3,503,888	+		GFF3463	0.10	-0.4
3,503,902	+		GFF3463	0.11	+0.6
3,503,905	+		GFF3463	0.11	-0.4
3,503,931	-		GFF3463	0.13	+0.5
3,503,931	-		GFF3463	0.13	-1.8
3,503,934	-		GFF3463	0.13	+0.9
3,503,949	-		GFF3463	0.14	-0.0
3,503,956	+		GFF3463	0.15	-1.7
3,503,982	+		GFF3463	0.16	-0.3
3,504,012	-		GFF3463	0.18	-0.8
3,504,021	+		GFF3463	0.19	-0.4
3,504,060	+		GFF3463	0.22	-0.4
3,504,067	-		GFF3463	0.22	-0.4
3,504,084	+		GFF3463	0.23	-2.8
3,504,087	-		GFF3463	0.23	+0.8
3,504,090	-		GFF3463	0.24	-0.0
3,504,092	-		GFF3463	0.24	+0.1
3,504,092	-		GFF3463	0.24	+0.1
3,504,107	+		GFF3463	0.25	-2.4
3,504,109	+		GFF3463	0.25	-1.6
3,504,115	-		GFF3463	0.25	-1.6
3,504,129	+		GFF3463	0.26	-0.1
3,504,144	-		GFF3463	0.27	+0.4
3,504,144	-		GFF3463	0.27	-0.2
3,504,152	-		GFF3463	0.28	+0.0
3,504,159	+		GFF3463	0.28	-0.4
3,504,172	-		GFF3463	0.29	-2.4
3,504,181	+		GFF3463	0.29	-0.3
3,504,189	+		GFF3463	0.30	-0.7
3,504,189	+		GFF3463	0.30	+0.1
3,504,189	+		GFF3463	0.30	-1.8
3,504,191	+		GFF3463	0.30	-1.6
3,504,191	+		GFF3463	0.30	-0.2
3,504,191	+		GFF3463	0.30	+0.1
3,504,197	-		GFF3463	0.31	-0.3
3,504,197	-		GFF3463	0.31	-0.3
3,504,199	-		GFF3463	0.31	+1.2
3,504,199	-		GFF3463	0.31	-0.8
3,504,199	-		GFF3463	0.31	-2.8
3,504,199	-		GFF3463	0.31	-0.8
3,504,204	-		GFF3463	0.31	-1.7
3,504,237	-		GFF3463	0.33	-0.5
3,504,259	-		GFF3463	0.35	+1.4
3,504,262	+		GFF3463	0.35	+0.1
3,504,270	+		GFF3463	0.35	+0.4
3,504,309	+		GFF3463	0.38	+0.4
3,504,312	-		GFF3463	0.38	+0.3
3,504,312	-		GFF3463	0.38	+1.2
3,504,327	+		GFF3463	0.39	+0.8
3,504,385	-		GFF3463	0.43	+0.6
3,504,407	+		GFF3463	0.44	-0.5
3,504,412	+		GFF3463	0.45	-1.0
3,504,412	+		GFF3463	0.45	+0.2
3,504,412	+		GFF3463	0.45	-2.3
3,504,412	+		GFF3463	0.45	-0.3
3,504,412	+		GFF3463	0.45	-0.4
3,504,412	+		GFF3463	0.45	-0.5
3,504,420	-		GFF3463	0.45	-0.2
3,504,420	-		GFF3463	0.45	-0.1
3,504,420	-		GFF3463	0.45	-0.2
3,504,420	-		GFF3463	0.45	-0.8
3,504,420	-		GFF3463	0.45	-0.6
3,504,420	-		GFF3463	0.45	-1.4
3,504,420	-		GFF3463	0.45	+0.9
3,504,420	-		GFF3463	0.45	+0.1
3,504,420	-		GFF3463	0.45	+1.1
3,504,420	-		GFF3463	0.45	+0.0
3,504,422	-		GFF3463	0.45	-0.1
3,504,429	+		GFF3463	0.46	-1.5
3,504,439	+		GFF3463	0.46	-1.4
3,504,439	+		GFF3463	0.46	-1.5
3,504,447	-		GFF3463	0.47	+1.8
3,504,479	-		GFF3463	0.49	-0.8
3,504,484	+		GFF3463	0.49	-0.1
3,504,508	+		GFF3463	0.51	-1.1
3,504,515	+		GFF3463	0.51	+1.1
3,504,515	+		GFF3463	0.51	-0.5
3,504,523	-		GFF3463	0.52	-0.9
3,504,527	+		GFF3463	0.52	+0.2
3,504,532	-		GFF3463	0.52	+1.3
3,504,560	+		GFF3463	0.54	-1.0
3,504,568	+		GFF3463	0.55	+0.1
3,504,581	+		GFF3463	0.56	-0.3
3,504,582	+		GFF3463	0.56	-2.0
3,504,647	+		GFF3463	0.60	+0.5
3,504,660	-		GFF3463	0.61	+0.3
3,504,670	-		GFF3463	0.61	-0.9
3,504,705	-		GFF3463	0.64	-1.4
3,504,712	-		GFF3463	0.64	-0.2
3,504,712	-		GFF3463	0.64	-0.6
3,504,731	-		GFF3463	0.65	+0.2
3,504,742	+		GFF3463	0.66	-1.4
3,504,743	+		GFF3463	0.66	-2.7
3,504,756	-		GFF3463	0.67	-1.2
3,504,756	-		GFF3463	0.67	-0.2
3,504,770	-		GFF3463	0.68	+1.4
3,504,770	-		GFF3463	0.68	-0.2
3,504,770	-		GFF3463	0.68	-0.3
3,504,772	+		GFF3463	0.68	-0.0
3,504,772	-		GFF3463	0.68	+0.6
3,504,772	-		GFF3463	0.68	-0.8
3,504,774	+		GFF3463	0.68	+0.0
3,504,774	+		GFF3463	0.68	-1.3
3,504,774	+		GFF3463	0.68	+0.7
3,504,774	+		GFF3463	0.68	-0.8
3,504,782	-		GFF3463	0.69	-0.7
3,504,782	-		GFF3463	0.69	-0.5
3,504,838	+		GFF3463	0.72	-0.2
3,504,838	+		GFF3463	0.72	-1.1
3,504,844	+		GFF3463	0.73	+0.4
3,504,846	-		GFF3463	0.73	-1.4
3,504,846	-		GFF3463	0.73	+1.1
3,504,852	-		GFF3463	0.73	-0.7
3,504,860	+		GFF3463	0.74	+0.4
3,504,868	-		GFF3463	0.74	-2.4
3,504,871	+		GFF3463	0.75	+1.6
3,504,876	+		GFF3463	0.75	-0.7
3,504,925	+		GFF3463	0.78	+0.3
3,504,933	-		GFF3463	0.79	+0.4
3,504,934	+		GFF3463	0.79	+0.6
3,504,942	-		GFF3463	0.79	-2.0
3,504,942	-		GFF3463	0.79	-1.4
3,504,970	-		GFF3463	0.81	+0.4
3,504,970	-		GFF3463	0.81	-0.7
3,504,984	+		GFF3463	0.82	+1.4
3,504,984	+		GFF3463	0.82	-0.0
3,505,006	+		GFF3463	0.83	+0.6
3,505,026	+		GFF3463	0.85	-0.2
3,505,026	+		GFF3463	0.85	+0.6
3,505,054	-		GFF3463	0.87	+0.0
3,505,091	+		GFF3463	0.89	+0.1
3,505,091	+		GFF3463	0.89	-0.8
3,505,098	-		GFF3463	0.90	-0.9
3,505,099	-		GFF3463	0.90	-0.4
3,505,099	-		GFF3463	0.90	-0.3
3,505,118	-				-2.9
3,505,153	-				+0.2
3,505,153	-				+0.3
3,505,153	-				+0.1
3,505,153	-				-1.4
3,505,153	-				-1.0
3,505,160	-				+0.1
3,505,182	+				-0.7
3,505,187	+				+0.2
3,505,187	+				-0.4
3,505,187	+				+0.6
3,505,190	-				+0.6
3,505,204	-				+0.2
3,505,204	-				+0.9
3,505,232	-				-0.9
3,505,265	-				-0.2
3,505,271	+				+0.3
3,505,279	-				-2.0
3,505,310	-		GFF3464	0.22	-0.2
3,505,310	-		GFF3464	0.22	-0.7
3,505,310	-		GFF3464	0.22	+0.7
3,505,310	-		GFF3464	0.22	+0.3
3,505,312	-		GFF3464	0.23	-0.1
3,505,312	-		GFF3464	0.23	-1.1
3,505,317	+		GFF3464	0.25	-0.9
3,505,322	+		GFF3464	0.27	-1.2
3,505,327	+		GFF3464	0.29	-0.9
3,505,332	+		GFF3464	0.31	-0.6
3,505,332	+		GFF3464	0.31	-1.2
3,505,335	-		GFF3464	0.32	-0.2
3,505,340	-		GFF3464	0.34	+0.8
3,505,340	-		GFF3464	0.34	-0.7
3,505,340	-		GFF3464	0.34	-0.5
3,505,340	-		GFF3464	0.34	-0.7
3,505,340	-		GFF3464	0.34	-1.0
3,505,349	-		GFF3464	0.37	-1.4
3,505,361	+		GFF3464	0.42	+0.8
3,505,369	-		GFF3464	0.45	+0.4
3,505,377	-		GFF3464	0.48	+0.4
3,505,379	+		GFF3464	0.49	+0.5
3,505,379	+		GFF3464	0.49	-0.1
3,505,387	-		GFF3464	0.52	-0.2
3,505,394	+		GFF3464	0.55	-2.2
3,505,446	+		GFF3464	0.75	-0.9
3,505,451	+		GFF3464	0.77	-0.8
3,505,454	-		GFF3464	0.78	+0.3
3,505,459	-		GFF3464	0.80	-1.3
3,505,527	-				+1.5
3,505,541	+				-0.1
3,505,541	+				+0.6
3,505,541	+				-1.3
3,505,542	-				-1.5
3,505,549	-				+0.2
3,505,549	-				-0.9
3,505,549	-				-1.1
3,505,556	+				-0.9
3,505,559	-				+0.3
3,505,559	-				+0.3
3,505,559	-				+0.3
3,505,561	+				+0.4
3,505,561	+				-0.6
3,505,561	-				-0.2
3,505,563	+				-1.0
3,505,568	+				-0.8
3,505,571	-				+0.6
3,505,681	+				+0.2
3,505,727	+				+0.3
3,505,727	+				-0.1
3,505,732	+				-0.4
3,505,735	-				-1.1
3,505,735	-				+0.0
3,505,737	+				+1.2
3,505,740	-				+0.3
3,505,740	-				+0.3
3,505,740	-				-0.8
3,505,745	-				-0.1
3,505,747	-				+0.8
3,505,795	+				-1.0
3,505,821	-				-1.8
3,505,822	-				-0.3
3,505,844	-				+1.8
3,505,847	-				+0.2
3,505,882	-		GFF3465	0.11	-0.4
3,505,887	-		GFF3465	0.12	-0.3
3,505,900	+		GFF3465	0.12	-2.2
3,505,900	+		GFF3465	0.12	+0.4
3,505,902	-		GFF3465	0.12	-0.4
3,505,905	+		GFF3465	0.12	-0.8
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3,505,915	+		GFF3465	0.13	+0.5
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3,505,939	+		GFF3465	0.14	-1.3
3,505,966	+		GFF3465	0.15	-0.4
3,505,974	-		GFF3465	0.16	-0.4
3,505,982	+		GFF3465	0.16	-1.4
3,505,982	+		GFF3465	0.16	-1.5
3,505,987	+		GFF3465	0.17	+0.2
3,505,990	-		GFF3465	0.17	-2.9
3,505,995	-		GFF3465	0.17	-0.6
3,505,996	-		GFF3465	0.17	-1.2
3,506,003	-		GFF3465	0.17	-0.5
3,506,021	-		GFF3465	0.18	+0.2
3,506,031	+		GFF3465	0.19	+0.8
3,506,037	+		GFF3465	0.19	+0.6
3,506,039	+		GFF3465	0.19	-0.2
3,506,039	+		GFF3465	0.19	-1.4
3,506,047	-		GFF3465	0.20	+1.0
3,506,047	-		GFF3465	0.20	-0.0
3,506,071	-		GFF3465	0.21	-0.4
3,506,089	+		GFF3465	0.22	-0.0
3,506,095	+		GFF3465	0.22	+0.6
3,506,095	+		GFF3465	0.22	-0.9
3,506,095	+		GFF3465	0.22	-1.1
3,506,097	-		GFF3465	0.22	-0.5
3,506,097	-		GFF3465	0.22	-2.0
3,506,103	-		GFF3465	0.22	+0.5
3,506,104	-		GFF3465	0.22	-1.9
3,506,120	+		GFF3465	0.23	-0.4
3,506,251	-		GFF3465	0.30	+0.4
3,506,253	-		GFF3465	0.30	-0.6