Strain Fitness in Sphingobium sp. HT1-2 around GFF3411

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,453,194	-		GFF3407	0.21	+0.0
3,453,194	-		GFF3407	0.21	-2.1
3,453,213	-		GFF3407	0.26	-0.1
3,453,215	+		GFF3407	0.26	-0.3
3,453,215	+		GFF3407	0.26	+1.1
3,453,215	+		GFF3407	0.26	-1.3
3,453,223	-		GFF3407	0.28	-0.8
3,453,252	+		GFF3407	0.36	-0.5
3,453,260	-		GFF3407	0.38	+0.3
3,453,262	+		GFF3407	0.38	-1.8
3,453,263	+		GFF3407	0.39	-0.2
3,453,263	+		GFF3407	0.39	-0.8
3,453,269	+		GFF3407	0.40	-0.6
3,453,271	-		GFF3407	0.41	-1.8
3,453,279	-		GFF3407	0.43	-0.3
3,453,302	+		GFF3407	0.49	-0.3
3,453,302	+		GFF3407	0.49	-0.1
3,453,310	-		GFF3407	0.51	-1.3
3,453,310	-		GFF3407	0.51	-1.6
3,453,310	-		GFF3407	0.51	-1.7
3,453,316	-		GFF3407	0.52	+0.5
3,453,335	+		GFF3407	0.57	-1.6
3,453,336	+		GFF3407	0.57	+0.0
3,453,358	-		GFF3407	0.63	-1.6
3,453,362	+		GFF3407	0.64	+0.2
3,453,395	-		GFF3407	0.73	+0.1
3,453,426	+		GFF3407	0.81	+0.7
3,453,426	+		GFF3407	0.81	+0.4
3,453,434	-		GFF3407	0.83	-0.3
3,453,434	-		GFF3407	0.83	-0.8
3,453,434	-		GFF3407	0.83	-0.1
3,453,436	+		GFF3407	0.83	-0.1
3,453,436	+		GFF3407	0.83	+0.1
3,453,438	+		GFF3407	0.84	-2.2
3,453,439	-		GFF3407	0.84	-0.7
3,453,444	-		GFF3407	0.85	+0.7
3,453,444	-		GFF3407	0.85	+0.3
3,453,444	-		GFF3407	0.85	-0.8
3,453,462	+				-0.5
3,453,475	+				+0.8
3,453,480	+				+0.8
3,453,480	+				-1.6
3,453,483	-				-2.2
3,453,488	-				+0.4
3,453,488	-				-0.4
3,453,488	-				-1.1
3,453,488	-				+1.7
3,453,488	-				-0.6
3,453,489	+				+0.7
3,453,515	+				-2.2
3,453,520	+				-0.3
3,453,520	+				-0.2
3,453,523	-				+0.7
3,453,537	+				+0.1
3,453,537	+				+0.2
3,453,537	+				-1.1
3,453,537	+				+0.3
3,453,537	-				-0.7
3,453,545	-		GFF3408	0.12	-0.9
3,453,545	-		GFF3408	0.12	-0.5
3,453,545	-		GFF3408	0.12	-0.7
3,453,588	+		GFF3408	0.28	-0.1
3,453,588	+		GFF3408	0.28	-0.8
3,453,636	-		GFF3408	0.46	+0.0
3,453,670	+		GFF3408	0.58	-0.5
3,453,671	-		GFF3408	0.59	-2.1
3,453,674	+		GFF3408	0.60	-0.2
3,453,674	+		GFF3408	0.60	-1.5
3,453,681	-		GFF3408	0.62	-0.8
3,453,683	-		GFF3408	0.63	-0.6
3,453,683	-		GFF3408	0.63	-0.8
3,453,683	-		GFF3408	0.63	+0.1
3,453,683	-		GFF3408	0.63	+0.4
3,453,684	+		GFF3408	0.63	-2.5
3,453,714	+		GFF3408	0.74	-0.2
3,453,721	+		GFF3408	0.77	+0.1
3,453,729	-		GFF3408	0.80	-0.1
3,453,729	-		GFF3408	0.80	-2.0
3,453,729	-		GFF3408	0.80	-1.3
3,453,729	-		GFF3408	0.80	+1.3
3,453,729	-		GFF3408	0.80	-0.3
3,453,802	+		GFF3409	0.11	+0.7
3,453,839	+		GFF3409	0.27	-1.8
3,453,840	-		GFF3409	0.28	+1.9
3,453,847	-		GFF3409	0.31	+0.7
3,453,899	+		GFF3409	0.55	-1.1
3,453,899	+		GFF3409	0.55	-0.8
3,453,899	+		GFF3409	0.55	+0.2
3,453,907	-		GFF3409	0.58	+0.4
3,453,907	-		GFF3409	0.58	+0.5
3,453,907	-		GFF3409	0.58	-0.1
3,453,923	+		GFF3409	0.66	-1.6
3,453,925	-		GFF3409	0.67	-2.1
3,453,933	-		GFF3409	0.70	+0.7
3,453,954	+		GFF3409	0.80	+0.8
3,453,970	-		GFF3409	0.87	-0.3
3,453,970	-		GFF3409	0.87	-0.4
3,453,985	+				-0.6
3,453,985	+				+1.0
3,453,993	-				+0.2
3,453,997	+				-0.4
3,454,008	+				-2.0
3,454,008	+				+0.0
3,454,016	+		GFF3410	0.11	+0.0
3,454,016	+		GFF3410	0.11	-0.9
3,454,024	-		GFF3410	0.15	+0.6
3,454,024	-		GFF3410	0.15	-0.3
3,454,031	-		GFF3410	0.18	-0.2
3,454,053	+		GFF3410	0.29	-1.1
3,454,063	+		GFF3410	0.34	+0.3
3,454,100	+		GFF3410	0.52	+0.8
3,454,100	+		GFF3410	0.52	-1.3
3,454,100	+		GFF3410	0.52	-1.6
3,454,100	+		GFF3410	0.52	-0.0
3,454,108	-		GFF3410	0.56	-1.1
3,454,113	-		GFF3410	0.58	-0.5
3,454,113	-		GFF3410	0.58	+0.7
3,454,128	+		GFF3410	0.66	-1.5
3,454,160	-		GFF3410	0.81	-0.7
3,454,162	+		GFF3410	0.82	-0.1
3,454,162	+		GFF3410	0.82	-0.1
3,454,162	+		GFF3410	0.82	+0.2
3,454,162	+		GFF3410	0.82	+0.2
3,454,162	+		GFF3410	0.82	-0.0
3,454,162	+		GFF3410	0.82	-0.5
3,454,162	+		GFF3410	0.82	+0.1
3,454,170	-		GFF3410	0.86	+0.3
3,454,170	-		GFF3410	0.86	+0.8
3,454,170	-		GFF3410	0.86	-1.1
3,454,170	-		GFF3410	0.86	-0.4
3,454,170	-		GFF3410	0.86	-1.5
3,454,177	-				-0.5
3,454,177	-				-0.8
3,454,177	-				-0.2
3,454,185	+				-0.2
3,454,193	-				+0.1
3,454,207	+				-0.1
3,454,217	+				-1.2
3,454,217	+				+0.1
3,454,217	+				+0.8
3,454,225	+				+0.5
3,454,225	-				-0.6
3,454,225	-				-1.0
3,454,237	+		GFF3411	0.12	+0.9
3,454,238	-		GFF3411	0.12	-0.2
3,454,245	-		GFF3411	0.14	-1.9
3,454,284	+		GFF3411	0.25	-0.7
3,454,309	+		GFF3411	0.31	+0.0
3,454,317	-		GFF3411	0.34	-1.0
3,454,319	-		GFF3411	0.34	+0.7
3,454,322	-		GFF3411	0.35	-0.6
3,454,330	-		GFF3411	0.37	+0.0
3,454,348	+		GFF3411	0.42	-1.3
3,454,368	+		GFF3411	0.48	-0.3
3,454,407	+		GFF3411	0.58	-0.3
3,454,416	-		GFF3411	0.61	+1.2
3,454,435	+		GFF3411	0.66	-0.1
3,454,437	+		GFF3411	0.66	-0.2
3,454,440	+		GFF3411	0.67	+0.2
3,454,448	-		GFF3411	0.69	-0.3
3,454,448	-		GFF3411	0.69	+0.9
3,454,479	+		GFF3411	0.78	-0.3
3,454,479	+		GFF3411	0.78	+0.0
3,454,479	+		GFF3411	0.78	+0.9
3,454,479	+		GFF3411	0.78	-0.2
3,454,479	+		GFF3411	0.78	-0.1
3,454,495	-		GFF3411	0.82	-0.4
3,454,497	+		GFF3411	0.83	-1.5
3,454,497	+		GFF3411	0.83	-0.7
3,454,497	+		GFF3411	0.83	+0.2
3,454,497	+		GFF3411	0.83	+1.5
3,454,497	+		GFF3411	0.83	-0.0
3,454,505	-		GFF3411	0.85	+0.1
3,454,505	-		GFF3411	0.85	+0.7
3,454,505	-		GFF3411	0.85	-1.5
3,454,505	-		GFF3411	0.85	-0.3
3,454,505	-		GFF3411	0.85	-0.6
3,454,505	-		GFF3411	0.85	+0.5
3,454,505	-		GFF3411	0.85	+0.2
3,454,505	-		GFF3411	0.85	+0.6
3,454,505	-		GFF3411	0.85	-1.7
3,454,505	-		GFF3411	0.85	-1.4
3,454,505	-		GFF3411	0.85	-0.3
3,454,515	-		GFF3411	0.88	-0.3
3,454,515	-		GFF3411	0.88	+0.3
3,454,515	-		GFF3411	0.88	-0.0
3,454,517	+		GFF3411	0.88	-2.0
3,454,532	+				-0.8
3,454,532	+				-0.4
3,454,532	+				-0.6
3,454,532	+				-0.8
3,454,532	+				+0.6
3,454,532	+				-2.3
3,454,532	+				-1.8
3,454,532	+				-2.1
3,454,532	+				-0.9
3,454,532	+				-0.3
3,454,532	+				-0.1
3,454,532	+				-0.5
3,454,532	+				-2.6
3,454,532	+				+0.7
3,454,532	+				+0.1
3,454,532	+				-1.8
3,454,532	+				+1.5
3,454,532	+				-0.6
3,454,532	+				+0.8
3,454,532	+				+0.2
3,454,532	+				-0.0
3,454,532	+				-0.6
3,454,532	+				+0.7
3,454,537	+				+0.9
3,454,540	+				-0.3
3,454,540	-				-0.3
3,454,540	-				-0.7
3,454,540	-				+0.2
3,454,540	-				+0.0
3,454,540	-				+0.1
3,454,540	-				+0.0
3,454,540	-				-0.4
3,454,540	-				-0.8
3,454,540	-				+0.2
3,454,540	-				-1.1
3,454,540	-				-1.9
3,454,540	-				+0.7
3,454,540	-				+1.1
3,454,540	-				+0.2
3,454,540	-				-1.7
3,454,540	-				+0.0
3,454,540	-				-0.8
3,454,540	-				-1.2
3,454,540	-				-0.6
3,454,540	-				-1.0
3,454,540	-				-1.3
3,454,540	-				-1.0
3,454,540	-				-0.1
3,454,540	-				-0.6
3,454,540	-				+0.7
3,454,540	-				-2.1
3,454,540	-				-0.5
3,454,540	-				+0.2
3,454,540	-				-1.5
3,454,547	-				-2.0
3,454,547	-				-1.6
3,454,565	+				-0.4
3,454,573	-				-1.1
3,454,583	-				-0.6
3,454,584	+				+0.7
3,454,610	-		GFF3412	0.18	+0.3
3,454,610	-		GFF3412	0.18	-1.6
3,454,612	+		GFF3412	0.18	-0.9
3,454,612	+		GFF3412	0.18	-1.8
3,454,612	+		GFF3412	0.18	+0.2
3,454,612	+		GFF3412	0.18	-0.6
3,454,633	+		GFF3412	0.25	-1.2
3,454,634	+		GFF3412	0.26	+1.5
3,454,636	-		GFF3412	0.26	-1.0
3,454,636	-		GFF3412	0.26	-0.1
3,454,646	-		GFF3412	0.30	+1.0
3,454,646	-		GFF3412	0.30	+0.0
3,454,648	-		GFF3412	0.30	-0.5
3,454,651	+		GFF3412	0.31	-0.2
3,454,659	-		GFF3412	0.34	+0.2
3,454,661	+		GFF3412	0.35	-1.3
3,454,661	+		GFF3412	0.35	-1.8
3,454,661	+		GFF3412	0.35	-1.8
3,454,669	-		GFF3412	0.37	-0.5
3,454,671	+		GFF3412	0.38	-1.9
3,454,679	+		GFF3412	0.41	+0.9
3,454,679	+		GFF3412	0.41	-1.5
3,454,679	-		GFF3412	0.41	-0.5
3,454,686	+		GFF3412	0.43	+0.7
3,454,688	-		GFF3412	0.44	+0.2
3,454,689	+		GFF3412	0.44	+0.0
3,454,717	-		GFF3412	0.53	-0.9
3,454,718	+		GFF3412	0.53	-0.1
3,454,721	-		GFF3412	0.54	-0.2
3,454,731	-		GFF3412	0.58	+0.2
3,454,776	+		GFF3412	0.73	+0.3
3,454,827	-		GFF3412	0.89	+0.5
3,454,828	+				-0.1
3,454,828	+				-0.1
3,454,828	+				+0.6
3,454,828	+				+0.6
3,454,836	-				-1.2
3,454,836	-				+0.3
3,454,836	-				+0.2
3,454,836	-				-0.6
3,454,838	+				-0.8
3,454,838	+				-0.5
3,454,838	+				+0.6
3,454,846	-				+1.0
3,454,861	-				-0.6
3,454,880	-				+0.4
3,454,939	+				-0.1
3,454,939	+				-0.1
3,454,942	-				-0.6
3,454,944	+				+0.6
3,454,944	+				-1.6
3,454,944	+				+0.2
3,454,944	+				+0.0
3,454,944	+				+0.2
3,454,944	+				-1.4
3,454,952	-				+0.2
3,454,952	-				-0.2
3,454,954	+				-1.3
3,454,954	-				+0.2
3,454,962	-				-1.3
3,454,962	-				-0.0
3,454,964	+				+0.4
3,454,964	+				+0.2
3,454,964	+				-0.2
3,454,964	+				+0.7
3,454,972	-				+0.7
3,454,975	+				-2.1
3,454,983	-				-0.1
3,454,987	+				-1.8
3,454,991	+				-1.7
3,454,999	-				+0.0
3,454,999	-				-1.2
3,454,999	-				-0.1
3,455,005	-				-0.8
3,455,005	-				-0.5
3,455,010	+				-1.8
3,455,040	-				+0.2
3,455,053	+				-0.1
3,455,061	-				+0.2
3,455,079	-				+0.1
3,455,103	+				-0.0
3,455,132	-				-1.2
3,455,134	+				-0.2
3,455,134	+				-1.2
3,455,134	+				+0.3
3,455,134	+				-0.2
3,455,134	+				+0.2
3,455,134	+				+0.2
3,455,134	+				-0.3
3,455,134	+				+1.1
3,455,134	+				-1.1
3,455,134	+				+0.6
3,455,134	+				+0.2
3,455,134	+				-0.9
3,455,134	+				-0.3
3,455,134	+				-0.4
3,455,134	+				+0.6
3,455,134	+				-2.5
3,455,134	+				-0.5
3,455,134	+				+0.4
3,455,134	+				-0.3
3,455,134	+				+1.4
3,455,134	+				-0.9
3,455,134	+				+1.2
3,455,134	+				+0.9
3,455,134	+				+1.5
3,455,134	+				-0.9
3,455,134	+				-0.0
3,455,134	+				+0.2
3,455,134	+				+0.6
3,455,134	+				-1.0
3,455,134	+				+0.5
3,455,134	+				-1.7
3,455,134	+				-0.8
3,455,134	+				-0.9
3,455,134	+				-1.4
3,455,134	+				-1.7
3,455,134	+				-1.3
3,455,134	+				-2.2
3,455,134	+				-0.8
3,455,134	+				-1.2
3,455,134	+				+0.9
3,455,134	+				-0.1
3,455,134	+				-0.3
3,455,134	+				-0.7
3,455,134	+				-0.1
3,455,135	-				-1.5
3,455,142	-				+1.7
3,455,142	-				+0.1
3,455,142	-				+0.2
3,455,142	-				-2.7
3,455,142	-				+0.2
3,455,142	-				-0.0
3,455,142	-				+0.0
3,455,142	-				-0.8
3,455,142	-				-0.5
3,455,142	-				-0.1
3,455,142	-				+1.4
3,455,142	-				+0.3
3,455,142	-				+0.4
3,455,142	-				+0.0
3,455,142	-				-0.7
3,455,142	-				-2.0
3,455,142	-				-0.8
3,455,142	-				+0.7
3,455,142	-				-1.0
3,455,142	-				-0.3
3,455,142	-				+0.6
3,455,142	-				-0.2
3,455,142	-				-1.2
3,455,142	-				+0.2
3,455,142	-				+1.2
3,455,142	-				+0.6
3,455,142	-				+0.2
3,455,142	-				-1.3
3,455,142	-				-1.4
3,455,142	-				+1.1
3,455,142	-				-1.8
3,455,142	-				-1.0
3,455,142	-				-0.4
3,455,142	-				+0.2
3,455,142	-				-0.6
3,455,142	-				+0.6
3,455,142	-				+0.1
3,455,146	+				+0.2
3,455,204	+				-2.1
3,455,204	+				-0.1
3,455,209	+				+0.2
3,455,209	+				-1.3
3,455,212	-				-0.6
3,455,212	-				+1.2
3,455,212	-				-0.6
3,455,217	-				+0.5
3,455,217	-				-1.2
3,455,217	-				+0.9
3,455,217	-				-0.9
3,455,234	+				+0.8
3,455,234	+				-0.6
3,455,236	+				+0.2
3,455,236	+				-1.3
3,455,237	+				+0.2
3,455,237	+				-0.9
3,455,240	-				+0.6
3,455,242	-				-0.4
3,455,244	-				+0.4
3,455,251	+				-0.4
3,455,259	-				-0.8
3,455,276	-		GFF3413	0.10	-0.1
3,455,276	-		GFF3413	0.10	-1.3
3,455,290	-		GFF3413	0.12	+0.7
3,455,290	-		GFF3413	0.12	+0.6
3,455,290	-		GFF3413	0.12	-0.1
3,455,295	-		GFF3413	0.12	-0.3
3,455,318	+		GFF3413	0.14	-0.7
3,455,326	-		GFF3413	0.14	+1.1
3,455,346	-		GFF3413	0.16	+0.0
3,455,366	+		GFF3413	0.17	-0.1
3,455,375	-		GFF3413	0.18	+0.4
3,455,386	+		GFF3413	0.19	+0.2
3,455,394	-		GFF3413	0.19	-0.4
3,455,396	+		GFF3413	0.19	+0.7
3,455,409	+		GFF3413	0.20	-1.3
3,455,409	+		GFF3413	0.20	-2.0
3,455,459	+		GFF3413	0.24	+0.8
3,455,478	-		GFF3413	0.26	-1.2
3,455,482	+		GFF3413	0.26	-1.5
3,455,482	+		GFF3413	0.26	-0.3
3,455,490	-		GFF3413	0.27	+0.1
3,455,490	-		GFF3413	0.27	-0.3
3,455,495	+		GFF3413	0.27	-0.2
3,455,495	-		GFF3413	0.27	-1.4
3,455,517	+		GFF3413	0.29	-0.5
3,455,529	+		GFF3413	0.29	+0.8
3,455,529	+		GFF3413	0.29	-2.3
3,455,530	+		GFF3413	0.30	-0.1
3,455,530	+		GFF3413	0.30	-1.1
3,455,537	-		GFF3413	0.30	+1.0
3,455,546	-		GFF3413	0.31	+0.3
3,455,546	-		GFF3413	0.31	-0.0
3,455,546	-		GFF3413	0.31	-2.0
3,455,556	+		GFF3413	0.32	-0.5