Strain Fitness in Sphingobium sp. HT1-2 around GFF3356

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,404,567	+				-0.6
3,404,567	+				-0.3
3,404,567	+				-0.2
3,404,567	+				-2.3
3,404,575	-				+0.3
3,404,575	-				-0.7
3,404,575	-				+0.5
3,404,575	-				-0.0
3,404,600	-				-0.5
3,404,600	-				-2.2
3,404,602	+				-1.9
3,404,612	+				-0.3
3,404,620	-				-0.5
3,404,620	-				-1.0
3,404,643	+				-2.8
3,404,683	+				-0.7
3,404,699	+				-0.2
3,404,699	-				+0.3
3,404,701	+				-0.6
3,404,701	+				-0.2
3,404,710	+				-0.7
3,404,720	-				-0.8
3,404,748	+				-0.0
3,404,771	+				+0.7
3,404,778	+				+1.1
3,404,779	-				-0.5
3,404,779	-				+1.0
3,404,788	+				-0.7
3,404,801	+				-0.5
3,404,805	-				-0.3
3,404,807	-				-0.9
3,404,809	-				-2.7
3,404,809	-				+0.2
3,404,811	-				-0.7
3,404,817	+				-1.5
3,404,825	-		GFF3355	0.11	-0.9
3,404,832	+		GFF3355	0.12	-0.4
3,404,851	+		GFF3355	0.14	+0.8
3,404,856	+		GFF3355	0.15	-0.4
3,404,857	-		GFF3355	0.15	-0.7
3,404,864	-		GFF3355	0.16	-0.3
3,404,884	+		GFF3355	0.19	+0.3
3,404,884	+		GFF3355	0.19	+1.3
3,404,892	-		GFF3355	0.20	+0.7
3,404,907	+		GFF3355	0.22	-0.4
3,404,915	-		GFF3355	0.23	+0.7
3,404,917	-		GFF3355	0.23	-1.3
3,404,917	-		GFF3355	0.23	+0.3
3,404,925	-		GFF3355	0.24	-1.5
3,404,935	-		GFF3355	0.25	+0.8
3,404,940	-		GFF3355	0.26	-0.7
3,404,942	+		GFF3355	0.26	-1.0
3,404,950	+		GFF3355	0.27	-0.3
3,404,961	+		GFF3355	0.29	+0.3
3,404,963	+		GFF3355	0.29	-0.7
3,404,971	-		GFF3355	0.30	-0.5
3,404,971	-		GFF3355	0.30	+0.4
3,404,971	-		GFF3355	0.30	+0.5
3,404,971	-		GFF3355	0.30	-0.6
3,404,987	+		GFF3355	0.32	+0.0
3,405,019	+		GFF3355	0.36	-0.2
3,405,025	+		GFF3355	0.37	-0.6
3,405,030	+		GFF3355	0.38	-0.8
3,405,031	+		GFF3355	0.38	-2.2
3,405,033	-		GFF3355	0.38	-0.5
3,405,035	+		GFF3355	0.38	-0.2
3,405,038	-		GFF3355	0.39	-0.0
3,405,079	-		GFF3355	0.44	-1.5
3,405,103	+		GFF3355	0.47	-1.7
3,405,108	+		GFF3355	0.48	-0.2
3,405,108	+		GFF3355	0.48	-1.1
3,405,116	-		GFF3355	0.49	+0.6
3,405,116	-		GFF3355	0.49	-1.0
3,405,117	+		GFF3355	0.49	+0.4
3,405,125	-		GFF3355	0.50	+0.3
3,405,126	+		GFF3355	0.50	-1.3
3,405,139	+		GFF3355	0.52	-1.9
3,405,141	+		GFF3355	0.52	-0.1
3,405,165	+		GFF3355	0.56	+0.6
3,405,192	+		GFF3355	0.59	-1.6
3,405,205	+		GFF3355	0.61	+1.1
3,405,205	+		GFF3355	0.61	-1.2
3,405,207	+		GFF3355	0.61	-0.5
3,405,237	-		GFF3355	0.65	-0.2
3,405,237	-		GFF3355	0.65	-0.6
3,405,238	+		GFF3355	0.65	-1.2
3,405,238	+		GFF3355	0.65	+1.1
3,405,238	+		GFF3355	0.65	-0.0
3,405,241	-		GFF3355	0.65	+0.1
3,405,243	+		GFF3355	0.66	-0.6
3,405,251	-		GFF3355	0.67	-0.2
3,405,251	-		GFF3355	0.67	+1.4
3,405,252	-		GFF3355	0.67	-0.9
3,405,253	+		GFF3355	0.67	-0.8
3,405,256	-		GFF3355	0.67	-0.5
3,405,263	+		GFF3355	0.68	+1.0
3,405,310	+		GFF3355	0.75	-0.8
3,405,316	+		GFF3355	0.75	+0.3
3,405,326	+		GFF3355	0.77	-0.3
3,405,349	+		GFF3355	0.80	+1.1
3,405,388	+		GFF3355	0.85	-1.5
3,405,401	+		GFF3355	0.86	+0.1
3,405,401	-		GFF3355	0.86	+0.7
3,405,403	+		GFF3355	0.87	+0.6
3,405,403	+		GFF3355	0.87	-0.7
3,405,403	+		GFF3355	0.87	+0.5
3,405,403	+		GFF3355	0.87	+0.4
3,405,403	+		GFF3355	0.87	+0.5
3,405,403	+		GFF3355	0.87	+0.9
3,405,403	+		GFF3355	0.87	-0.3
3,405,403	+		GFF3355	0.87	-2.0
3,405,403	+		GFF3355	0.87	-2.0
3,405,403	+		GFF3355	0.87	+0.3
3,405,403	+		GFF3355	0.87	+1.0
3,405,403	+		GFF3355	0.87	-1.8
3,405,403	+		GFF3355	0.87	-0.3
3,405,403	+		GFF3355	0.87	-0.7
3,405,403	+		GFF3355	0.87	-0.8
3,405,403	+		GFF3355	0.87	-1.0
3,405,403	+		GFF3355	0.87	-1.9
3,405,403	+		GFF3355	0.87	+0.8
3,405,403	+		GFF3355	0.87	-0.8
3,405,403	+		GFF3355	0.87	-2.2
3,405,403	+		GFF3355	0.87	-0.4
3,405,403	+		GFF3355	0.87	-0.4
3,405,403	+		GFF3355	0.87	-1.3
3,405,403	+		GFF3355	0.87	+0.3
3,405,403	+		GFF3355	0.87	-1.0
3,405,403	+		GFF3355	0.87	-1.8
3,405,403	+		GFF3355	0.87	+0.6
3,405,403	+		GFF3355	0.87	-0.1
3,405,403	+		GFF3355	0.87	+0.3
3,405,403	+		GFF3355	0.87	-2.2
3,405,403	+		GFF3355	0.87	+0.3
3,405,403	+		GFF3355	0.87	+2.1
3,405,403	+		GFF3355	0.87	+0.3
3,405,403	+		GFF3355	0.87	-0.4
3,405,403	+		GFF3355	0.87	-0.5
3,405,403	+		GFF3355	0.87	-1.6
3,405,403	+		GFF3355	0.87	+1.1
3,405,403	+		GFF3355	0.87	-1.8
3,405,411	-		GFF3355	0.88	-0.1
3,405,411	-		GFF3355	0.88	-0.5
3,405,411	-		GFF3355	0.88	-0.9
3,405,411	-		GFF3355	0.88	+0.1
3,405,411	-		GFF3355	0.88	+0.1
3,405,411	-		GFF3355	0.88	-0.6
3,405,411	-		GFF3355	0.88	-0.4
3,405,411	-		GFF3355	0.88	-0.6
3,405,411	-		GFF3355	0.88	-0.4
3,405,411	-		GFF3355	0.88	+0.5
3,405,411	-		GFF3355	0.88	+0.1
3,405,411	-		GFF3355	0.88	-1.7
3,405,411	-		GFF3355	0.88	-1.6
3,405,411	-		GFF3355	0.88	-0.1
3,405,411	-		GFF3355	0.88	-0.6
3,405,411	-		GFF3355	0.88	+0.3
3,405,411	-		GFF3355	0.88	-0.9
3,405,411	-		GFF3355	0.88	+0.3
3,405,411	-		GFF3355	0.88	-0.7
3,405,411	-		GFF3355	0.88	+0.5
3,405,411	-		GFF3355	0.88	-0.9
3,405,411	-		GFF3355	0.88	+0.3
3,405,411	-		GFF3355	0.88	-1.1
3,405,441	-				-0.1
3,405,445	+				-0.6
3,405,448	-				+2.1
3,405,450	+				-2.1
3,405,458	-				-0.4
3,405,467	-				+1.1
3,405,476	-				-0.5
3,405,489	+				-1.5
3,405,497	-				-0.6
3,405,507	+				+0.9
3,405,507	-				-1.3
3,405,507	-				+0.2
3,405,515	-				-0.7
3,405,534	+				-1.8
3,405,534	+				-1.0
3,405,534	+				-0.2
3,405,537	-				+0.0
3,405,537	-				-0.4
3,405,539	+				-0.9
3,405,539	+				+0.8
3,405,539	+				-0.4
3,405,542	-				+0.4
3,405,547	-				-1.4
3,405,555	+				-0.5
3,405,555	+				-0.6
3,405,558	-				+0.1
3,405,558	-				-0.0
3,405,558	-				+0.6
3,405,563	-				+0.0
3,405,563	-				+0.3
3,405,563	-				-0.9
3,405,565	+				-2.7
3,405,578	-				-0.2
3,405,578	-				-0.5
3,405,629	-				-0.9
3,405,649	-		GFF3356	0.12	+0.4
3,405,649	-		GFF3356	0.12	-2.4
3,405,670	+		GFF3356	0.14	+0.5
3,405,708	+		GFF3356	0.19	-0.4
3,405,711	-		GFF3356	0.19	-0.2
3,405,716	-		GFF3356	0.20	+0.1
3,405,760	-		GFF3356	0.26	-0.9
3,405,762	-		GFF3356	0.26	-2.1
3,405,762	-		GFF3356	0.26	+0.7
3,405,771	-		GFF3356	0.27	-1.5
3,405,790	+		GFF3356	0.30	-1.7
3,405,790	+		GFF3356	0.30	+0.3
3,405,798	-		GFF3356	0.31	+0.2
3,405,798	-		GFF3356	0.31	+1.7
3,405,798	-		GFF3356	0.31	+1.4
3,405,837	+		GFF3356	0.35	+0.1
3,405,837	+		GFF3356	0.35	+0.2
3,405,850	-		GFF3356	0.37	-0.3
3,405,856	+		GFF3356	0.38	+0.3
3,405,864	-		GFF3356	0.39	+0.1
3,405,864	-		GFF3356	0.39	-0.2
3,405,881	+		GFF3356	0.41	+0.6
3,405,938	+		GFF3356	0.48	-1.6
3,405,942	-		GFF3356	0.49	-1.0
3,405,978	+		GFF3356	0.53	-0.0
3,405,988	+		GFF3356	0.55	+1.0
3,405,995	+		GFF3356	0.56	+0.6
3,405,995	+		GFF3356	0.56	+0.9
3,406,008	-		GFF3356	0.57	-0.1
3,406,014	+		GFF3356	0.58	+0.5
3,406,048	+		GFF3356	0.62	+0.6
3,406,058	+		GFF3356	0.64	-1.3
3,406,058	+		GFF3356	0.64	-0.9
3,406,066	+		GFF3356	0.65	+0.0
3,406,066	-		GFF3356	0.65	-0.2
3,406,066	-		GFF3356	0.65	-0.3
3,406,066	-		GFF3356	0.65	+0.5
3,406,066	-		GFF3356	0.65	+0.5
3,406,084	-		GFF3356	0.67	-0.9
3,406,084	-		GFF3356	0.67	-1.5
3,406,084	-		GFF3356	0.67	+0.6
3,406,084	-		GFF3356	0.67	-1.0
3,406,084	-		GFF3356	0.67	+0.3
3,406,113	-		GFF3356	0.71	+0.7
3,406,135	+		GFF3356	0.73	+0.2
3,406,135	-		GFF3356	0.73	-0.6
3,406,142	+		GFF3356	0.74	+1.1
3,406,162	-		GFF3356	0.77	+0.0
3,406,174	+		GFF3356	0.78	+0.7
3,406,175	+		GFF3356	0.78	-1.6
3,406,183	-		GFF3356	0.80	+0.0
3,406,238	-		GFF3356	0.87	-2.0
3,406,252	-		GFF3356	0.88	-1.0
3,406,259	+		GFF3356	0.89	-0.3
3,406,259	+		GFF3356	0.89	-2.0
3,406,268	+				-0.4
3,406,276	-				+0.2
3,406,277	-				+0.5
3,406,292	+				+0.1
3,406,292	+				+0.0
3,406,297	+				-1.7
3,406,300	-				-0.1
3,406,300	-				+0.6
3,406,302	+				-0.2
3,406,321	+				+1.1
3,406,332	+				+0.8
3,406,342	+				-0.7
3,406,342	+				+1.0
3,406,342	+				-0.4
3,406,350	-				+1.2
3,406,350	-				-0.1
3,406,350	-				-0.4
3,406,350	-				-0.3
3,406,352	+				-0.3
3,406,376	-				-1.0
3,406,376	-				-1.1
3,406,376	-				+0.4
3,406,378	+				-0.3
3,406,398	+				+0.3
3,406,399	+				-0.7
3,406,399	-				-1.3
3,406,404	+				+0.4
3,406,405	+				-0.1
3,406,412	-				-0.3
3,406,413	-				-0.4
3,406,477	+				+1.4
3,406,482	+				-2.0
3,406,482	+				-0.4
3,406,482	+				-0.3
3,406,482	+				-1.3
3,406,482	+				+1.1
3,406,482	+				-1.6
3,406,490	-				+1.0
3,406,490	-				-0.6
3,406,490	-				-0.1
3,406,490	-				+1.4
3,406,490	-				-0.3
3,406,490	-				+1.6
3,406,490	-				-1.6
3,406,497	+				-0.3
3,406,540	+				-0.9
3,406,541	+				+0.4
3,406,575	-				+0.3
3,406,585	+				-0.3
3,406,585	+				-0.0
3,406,601	-				+0.3
3,406,631	+				-1.0
3,406,631	+				-2.0
3,406,646	+				+1.2
3,406,646	+				-1.4
3,406,646	+				-0.9
3,406,654	-				-1.2
3,406,654	-				+0.3
3,406,654	-				-0.5
3,406,659	-				-0.7
3,406,688	+				-0.5
3,406,701	-				+0.4
3,406,701	-				-1.8
3,406,706	-				+1.4
3,406,753	-		GFF3357	0.12	+0.4
3,406,755	+		GFF3357	0.12	+0.3
3,406,765	+		GFF3357	0.13	-0.7
3,406,768	-		GFF3357	0.13	-0.2
3,406,787	-		GFF3357	0.14	-2.2
3,406,800	-		GFF3357	0.14	+0.3
3,406,800	-		GFF3357	0.14	-0.0
3,406,824	+		GFF3357	0.16	+1.5
3,406,824	+		GFF3357	0.16	-0.5
3,406,862	-		GFF3357	0.17	+1.0
3,406,878	+		GFF3357	0.18	-1.8
3,406,885	+		GFF3357	0.19	+0.4
3,406,888	-		GFF3357	0.19	-1.2
3,406,923	+		GFF3357	0.20	+0.3
3,406,980	+		GFF3357	0.23	+0.3
3,406,980	+		GFF3357	0.23	+0.3
3,406,989	+		GFF3357	0.24	-1.0
3,407,011	+		GFF3357	0.25	-0.5
3,407,023	-		GFF3357	0.25	+0.5
3,407,028	-		GFF3357	0.25	-0.0
3,407,028	-		GFF3357	0.25	+0.2
3,407,042	+		GFF3357	0.26	-0.1
3,407,042	+		GFF3357	0.26	+0.3
3,407,042	+		GFF3357	0.26	+0.7
3,407,042	+		GFF3357	0.26	-1.2
3,407,050	-		GFF3357	0.26	-0.1
3,407,118	+		GFF3357	0.30	+1.1
3,407,118	+		GFF3357	0.30	-1.0
3,407,118	+		GFF3357	0.30	-0.2
3,407,121	-		GFF3357	0.30	-0.0
3,407,123	-		GFF3357	0.30	+0.5
3,407,126	-		GFF3357	0.30	+0.6
3,407,133	+		GFF3357	0.30	+0.3
3,407,141	-		GFF3357	0.31	-1.9
3,407,141	-		GFF3357	0.31	-0.5
3,407,142	+		GFF3357	0.31	+0.4
3,407,142	+		GFF3357	0.31	+1.0
3,407,152	+		GFF3357	0.31	+0.1
3,407,152	+		GFF3357	0.31	+0.6
3,407,152	+		GFF3357	0.31	+0.4
3,407,152	+		GFF3357	0.31	+0.8
3,407,152	+		GFF3357	0.31	+2.3
3,407,152	+		GFF3357	0.31	-0.8
3,407,152	+		GFF3357	0.31	-0.8
3,407,152	+		GFF3357	0.31	-1.2
3,407,152	+		GFF3357	0.31	-0.8
3,407,160	-		GFF3357	0.32	-0.7
3,407,160	-		GFF3357	0.32	+0.9
3,407,160	-		GFF3357	0.32	-0.6
3,407,160	-		GFF3357	0.32	-2.2
3,407,160	-		GFF3357	0.32	+0.6
3,407,160	-		GFF3357	0.32	+0.9
3,407,160	-		GFF3357	0.32	-0.4
3,407,160	-		GFF3357	0.32	-1.6
3,407,160	-		GFF3357	0.32	-0.2
3,407,160	-		GFF3357	0.32	-0.5
3,407,160	-		GFF3357	0.32	+0.7
3,407,160	-		GFF3357	0.32	-1.4
3,407,160	-		GFF3357	0.32	+0.6
3,407,160	-		GFF3357	0.32	-0.9
3,407,160	-		GFF3357	0.32	-0.6
3,407,160	-		GFF3357	0.32	-1.2
3,407,165	-		GFF3357	0.32	-0.4
3,407,170	-		GFF3357	0.32	+0.8
3,407,218	-		GFF3357	0.34	+1.2
3,407,227	-		GFF3357	0.35	-0.7
3,407,251	+		GFF3357	0.36	+0.5
3,407,253	+		GFF3357	0.36	+0.1
3,407,259	-		GFF3357	0.36	-2.4
3,407,259	-		GFF3357	0.36	-0.3
3,407,259	-		GFF3357	0.36	-0.6
3,407,259	-		GFF3357	0.36	-2.2
3,407,260	+		GFF3357	0.36	-0.9
3,407,260	+		GFF3357	0.36	-0.8
3,407,267	-		GFF3357	0.37	+0.2
3,407,267	-		GFF3357	0.37	-1.6
3,407,273	+		GFF3357	0.37	-2.9
3,407,273	+		GFF3357	0.37	+0.7
3,407,275	-		GFF3357	0.37	+0.4
3,407,294	+		GFF3357	0.38	-1.2
3,407,332	-		GFF3357	0.40	+0.4