Strain Fitness in Sphingobium sp. HT1-2 around GFF3332

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,383,524	+		GFF3330	0.25	+0.6
3,383,524	+		GFF3330	0.25	-0.7
3,383,524	+		GFF3330	0.25	-0.7
3,383,527	-		GFF3330	0.26	-0.3
3,383,532	-		GFF3330	0.28	+0.3
3,383,532	-		GFF3330	0.28	-0.5
3,383,532	-		GFF3330	0.28	-0.5
3,383,553	+		GFF3330	0.35	-1.1
3,383,561	-		GFF3330	0.38	-1.8
3,383,561	-		GFF3330	0.38	-0.6
3,383,561	-		GFF3330	0.38	-1.4
3,383,590	+		GFF3330	0.48	+0.9
3,383,592	+		GFF3330	0.49	-0.1
3,383,606	-		GFF3330	0.54	+1.5
3,383,613	+		GFF3330	0.56	-1.0
3,383,613	+		GFF3330	0.56	+0.8
3,383,636	+		GFF3330	0.64	-2.8
3,383,642	-		GFF3330	0.66	-0.3
3,383,644	-		GFF3330	0.67	-0.2
3,383,654	-		GFF3330	0.70	-2.0
3,383,666	+		GFF3330	0.75	+0.3
3,383,666	+		GFF3330	0.75	-1.0
3,383,666	+		GFF3330	0.75	-0.3
3,383,673	+		GFF3330	0.77	-2.2
3,383,673	+		GFF3330	0.77	-0.4
3,383,673	+		GFF3330	0.77	-2.2
3,383,673	+		GFF3330	0.77	+0.1
3,383,673	+		GFF3330	0.77	-2.0
3,383,673	+		GFF3330	0.77	+0.2
3,383,673	+		GFF3330	0.77	-0.5
3,383,674	-		GFF3330	0.77	-2.2
3,383,674	-		GFF3330	0.77	+0.5
3,383,681	-		GFF3330	0.80	-0.8
3,383,681	-		GFF3330	0.80	-2.1
3,383,681	-		GFF3330	0.80	+0.4
3,383,711	+				-1.8
3,383,712	+				+0.7
3,383,719	+				-1.3
3,383,719	-				-1.2
3,383,720	+				-1.9
3,383,731	+				+0.2
3,383,734	-				-1.2
3,383,741	+				+0.5
3,383,749	-				+1.1
3,383,749	-				-1.3
3,383,749	-				+0.6
3,383,749	-				-1.3
3,383,754	-				-1.6
3,383,766	+				-1.4
3,383,776	+				+0.5
3,383,776	+				+0.4
3,383,776	+				+0.4
3,383,781	+				-0.8
3,383,789	-				-0.1
3,383,789	-				+1.5
3,383,789	-				+1.6
3,383,812	+				+0.3
3,383,849	+		GFF3331	0.11	-0.7
3,383,849	+		GFF3331	0.11	-0.1
3,383,849	+		GFF3331	0.11	+1.2
3,383,849	+		GFF3331	0.11	-0.3
3,383,849	+		GFF3331	0.11	-1.5
3,383,849	+		GFF3331	0.11	-0.6
3,383,849	+		GFF3331	0.11	+1.2
3,383,849	+		GFF3331	0.11	-0.2
3,383,849	+		GFF3331	0.11	-2.2
3,383,849	+		GFF3331	0.11	-0.8
3,383,849	+		GFF3331	0.11	-0.3
3,383,849	+		GFF3331	0.11	+0.7
3,383,849	+		GFF3331	0.11	+0.2
3,383,849	+		GFF3331	0.11	+1.7
3,383,849	+		GFF3331	0.11	+1.3
3,383,856	+		GFF3331	0.12	+0.9
3,383,856	+		GFF3331	0.12	+0.3
3,383,857	-		GFF3331	0.12	-0.9
3,383,857	-		GFF3331	0.12	-1.1
3,383,857	-		GFF3331	0.12	-1.9
3,383,857	-		GFF3331	0.12	-2.6
3,383,857	-		GFF3331	0.12	-0.2
3,383,857	-		GFF3331	0.12	+1.0
3,383,857	-		GFF3331	0.12	-1.3
3,383,857	-		GFF3331	0.12	-0.6
3,383,857	-		GFF3331	0.12	+0.8
3,383,859	+		GFF3331	0.12	+0.5
3,383,869	+		GFF3331	0.14	-1.9
3,383,869	+		GFF3331	0.14	-0.0
3,383,869	+		GFF3331	0.14	-1.1
3,383,869	+		GFF3331	0.14	+0.6
3,383,877	-		GFF3331	0.15	+0.3
3,383,877	-		GFF3331	0.15	-0.0
3,383,877	-		GFF3331	0.15	+0.2
3,383,877	-		GFF3331	0.15	-1.0
3,383,877	-		GFF3331	0.15	-2.6
3,383,895	+		GFF3331	0.18	+0.3
3,383,895	+		GFF3331	0.18	+0.3
3,383,895	+		GFF3331	0.18	+0.8
3,383,903	-		GFF3331	0.19	-0.6
3,383,905	-		GFF3331	0.20	+0.2
3,383,919	+		GFF3331	0.22	+0.7
3,383,919	+		GFF3331	0.22	-1.9
3,383,919	+		GFF3331	0.22	+0.8
3,383,927	-		GFF3331	0.23	+0.4
3,383,940	+		GFF3331	0.25	-0.2
3,383,950	+		GFF3331	0.27	-0.1
3,383,950	+		GFF3331	0.27	-0.7
3,383,952	-		GFF3331	0.27	+0.7
3,383,952	-		GFF3331	0.27	-1.3
3,383,958	-		GFF3331	0.28	-1.3
3,383,958	-		GFF3331	0.28	-0.2
3,383,958	-		GFF3331	0.28	-1.0
3,383,958	-		GFF3331	0.28	+0.4
3,383,958	-		GFF3331	0.28	+0.1
3,383,968	+		GFF3331	0.30	+1.3
3,384,024	+		GFF3331	0.39	-0.6
3,384,024	+		GFF3331	0.39	-0.7
3,384,024	+		GFF3331	0.39	+1.1
3,384,032	+		GFF3331	0.40	+0.3
3,384,032	+		GFF3331	0.40	-0.7
3,384,036	+		GFF3331	0.41	+0.4
3,384,041	-		GFF3331	0.42	-1.7
3,384,092	+		GFF3331	0.50	+0.8
3,384,092	+		GFF3331	0.50	+0.9
3,384,109	+		GFF3331	0.53	+1.7
3,384,109	+		GFF3331	0.53	+0.7
3,384,109	+		GFF3331	0.53	+0.4
3,384,139	+		GFF3331	0.57	+0.2
3,384,161	+		GFF3331	0.61	+0.1
3,384,195	+		GFF3331	0.67	+1.1
3,384,215	+		GFF3331	0.70	+0.4
3,384,215	+		GFF3331	0.70	-1.3
3,384,215	-		GFF3331	0.70	-0.0
3,384,223	-		GFF3331	0.71	-0.4
3,384,223	-		GFF3331	0.71	-0.7
3,384,230	+		GFF3331	0.72	+0.0
3,384,239	-		GFF3331	0.74	+0.3
3,384,250	+		GFF3331	0.75	+0.2
3,384,264	+		GFF3331	0.78	+1.7
3,384,265	-		GFF3331	0.78	-1.4
3,384,265	-		GFF3331	0.78	-0.3
3,384,307	-		GFF3331	0.85	-1.6
3,384,311	-		GFF3331	0.85	+0.7
3,384,331	+		GFF3331	0.89	-0.6
3,384,336	-		GFF3331	0.89	-0.6
3,384,363	+				-0.5
3,384,364	-				-0.4
3,384,377	+				-0.8
3,384,384	+				+0.1
3,384,385	-				+0.5
3,384,392	-				-1.0
3,384,395	+				-0.7
3,384,403	-				+0.2
3,384,405	-				+0.3
3,384,463	+				-1.1
3,384,474	+				-0.2
3,384,474	+				-0.7
3,384,474	+				-0.8
3,384,474	+				-0.3
3,384,482	-				-0.9
3,384,482	-				+0.1
3,384,482	-				-0.9
3,384,482	-				+0.1
3,384,482	-				-0.2
3,384,482	-				+0.4
3,384,482	-				+0.6
3,384,482	-				-1.6
3,384,482	-				+0.7
3,384,484	+				-0.7
3,384,488	+				-0.6
3,384,496	-				-0.9
3,384,539	-				-0.3
3,384,539	-				+0.3
3,384,541	+				+0.1
3,384,546	+		GFF3332	0.10	+1.5
3,384,546	+		GFF3332	0.10	+1.6
3,384,546	+		GFF3332	0.10	+0.5
3,384,554	-		GFF3332	0.13	-0.5
3,384,564	-		GFF3332	0.16	-0.5
3,384,565	+		GFF3332	0.16	+0.1
3,384,577	+		GFF3332	0.20	-1.6
3,384,582	+		GFF3332	0.22	+0.4
3,384,585	-		GFF3332	0.23	-2.8
3,384,586	+		GFF3332	0.23	+0.5
3,384,617	-		GFF3332	0.34	+0.3
3,384,649	+		GFF3332	0.44	+0.9
3,384,660	+		GFF3332	0.48	+0.9
3,384,718	+		GFF3332	0.67	-0.9
3,384,723	+		GFF3332	0.69	-1.4
3,384,726	+		GFF3332	0.70	-1.5
3,384,726	+		GFF3332	0.70	+1.2
3,384,726	+		GFF3332	0.70	+0.5
3,384,726	+		GFF3332	0.70	+0.3
3,384,734	-		GFF3332	0.73	+0.3
3,384,736	+		GFF3332	0.73	-0.2
3,384,770	+		GFF3332	0.85	-0.5
3,384,848	-				-0.2
3,384,848	-				-0.9
3,384,961	+				-1.5
3,384,986	+				-1.6
3,384,989	+				-0.4
3,384,989	+				-0.5
3,384,997	-				-0.2
3,385,059	+				+0.4
3,385,059	+				+0.9
3,385,059	+				+0.4
3,385,059	+				+0.1
3,385,059	+				-0.2
3,385,059	+				-0.9
3,385,059	+				+0.9
3,385,060	+				-0.0
3,385,060	+				-0.4
3,385,061	+				-1.8
3,385,067	-				+1.1
3,385,067	-				-1.0
3,385,067	-				-0.9
3,385,067	-				-1.0
3,385,067	-				+0.1
3,385,067	-				-1.3
3,385,068	-				+0.5
3,385,068	-				-0.3
3,385,069	-				-2.3
3,385,071	+				-0.4
3,385,078	+				-1.3
3,385,099	-				+0.3
3,385,101	+				+0.3
3,385,101	+				+1.1
3,385,101	+				+0.8
3,385,101	+				-0.6
3,385,101	+				-0.7
3,385,101	+				-0.5
3,385,101	+				-0.3
3,385,101	+				-1.6
3,385,109	-				+0.2
3,385,109	-				-1.2
3,385,109	-				+0.3
3,385,109	-				+0.5
3,385,112	+				-1.0
3,385,114	-				+0.6
3,385,114	-				-0.3
3,385,120	-				+0.6
3,385,120	-				-2.4
3,385,125	+				-0.3
3,385,155	-				-0.9
3,385,174	+				-0.8
3,385,182	+				+0.6
3,385,182	+				-1.0
3,385,182	+				+0.7
3,385,182	+				-1.1
3,385,183	+				-0.9
3,385,190	-				-0.1
3,385,190	-				-0.7
3,385,190	-				-0.0
3,385,190	-				-0.7
3,385,190	-				+0.2
3,385,190	-				-0.2
3,385,190	-				+0.2
3,385,190	-				-1.3
3,385,191	-				-0.6
3,385,192	+				-1.8
3,385,200	-				+0.9
3,385,226	+				-0.7
3,385,226	+				-0.6
3,385,228	+				-0.1
3,385,228	+				-0.5
3,385,228	+				-1.8
3,385,228	+				-0.4
3,385,228	+				+0.4
3,385,228	+				+0.3
3,385,228	+				+0.3
3,385,228	+				-1.0
3,385,228	+				-0.2
3,385,228	+				-0.6
3,385,228	+				-0.2
3,385,228	+				-1.1
3,385,228	+				-1.4
3,385,228	+				-1.8
3,385,228	+				+0.9
3,385,228	+				-1.4
3,385,233	+				-0.0
3,385,233	+				+1.3
3,385,234	-				-1.4
3,385,234	-				-0.0
3,385,234	-				-1.6
3,385,236	-		GFF3333	0.10	-3.0
3,385,236	-		GFF3333	0.10	-1.4
3,385,236	-		GFF3333	0.10	+0.2
3,385,236	-		GFF3333	0.10	-0.2
3,385,236	-		GFF3333	0.10	-0.0
3,385,236	-		GFF3333	0.10	+0.1
3,385,236	-		GFF3333	0.10	+1.8
3,385,236	-		GFF3333	0.10	-1.3
3,385,236	-		GFF3333	0.10	-0.1
3,385,236	-		GFF3333	0.10	+0.0
3,385,236	-		GFF3333	0.10	+1.3
3,385,238	+		GFF3333	0.10	-0.1
3,385,238	+		GFF3333	0.10	-1.2
3,385,238	+		GFF3333	0.10	+0.5
3,385,241	-		GFF3333	0.10	+0.4
3,385,241	-		GFF3333	0.10	+1.5
3,385,241	-		GFF3333	0.10	-0.3
3,385,246	-		GFF3333	0.11	+1.5
3,385,246	-		GFF3333	0.11	-0.4
3,385,246	-		GFF3333	0.11	+0.4
3,385,246	-		GFF3333	0.11	-0.5
3,385,246	-		GFF3333	0.11	-1.3
3,385,251	+		GFF3333	0.11	-1.5
3,385,260	+		GFF3333	0.12	+0.3
3,385,260	+		GFF3333	0.12	+1.3
3,385,262	+		GFF3333	0.12	-1.5
3,385,268	-		GFF3333	0.13	+0.3
3,385,278	-		GFF3333	0.13	-1.5
3,385,283	+		GFF3333	0.14	-0.6
3,385,341	-		GFF3333	0.18	-1.6
3,385,343	+		GFF3333	0.18	-0.5
3,385,350	+		GFF3333	0.19	-0.0
3,385,427	+		GFF3333	0.25	-1.6
3,385,427	+		GFF3333	0.25	-0.0
3,385,435	-		GFF3333	0.25	+0.3
3,385,435	-		GFF3333	0.25	-0.4
3,385,435	-		GFF3333	0.25	+0.4
3,385,470	+		GFF3333	0.28	-0.5
3,385,482	-		GFF3333	0.29	+0.1
3,385,549	-		GFF3333	0.34	-0.0
3,385,550	+		GFF3333	0.34	+0.3
3,385,568	+		GFF3333	0.36	+1.1
3,385,576	-		GFF3333	0.36	-1.0
3,385,595	-		GFF3333	0.38	+0.3
3,385,630	-		GFF3333	0.41	+1.0
3,385,630	-		GFF3333	0.41	-1.3
3,385,630	-		GFF3333	0.41	-0.1
3,385,630	-		GFF3333	0.41	-0.3
3,385,632	+		GFF3333	0.41	+0.4
3,385,635	-		GFF3333	0.41	+1.0
3,385,640	+		GFF3333	0.41	+1.0
3,385,648	-		GFF3333	0.42	-0.3
3,385,648	-		GFF3333	0.42	-1.7
3,385,648	-		GFF3333	0.42	+0.2
3,385,664	-		GFF3333	0.43	-1.5
3,385,681	-		GFF3333	0.44	+0.2
3,385,681	-		GFF3333	0.44	-1.1
3,385,705	+		GFF3333	0.46	-0.7
3,385,713	-		GFF3333	0.47	-0.4
3,385,728	+		GFF3333	0.48	+0.0
3,385,738	-		GFF3333	0.49	-0.6
3,385,747	+		GFF3333	0.50	+0.4
3,385,752	+		GFF3333	0.50	-0.6
3,385,755	-		GFF3333	0.50	-1.3
3,385,760	-		GFF3333	0.51	-0.4
3,385,761	+		GFF3333	0.51	+0.3
3,385,761	+		GFF3333	0.51	+0.5
3,385,761	+		GFF3333	0.51	+1.9
3,385,761	+		GFF3333	0.51	-2.6
3,385,761	+		GFF3333	0.51	+0.2
3,385,761	+		GFF3333	0.51	-1.0
3,385,766	+		GFF3333	0.51	-1.6
3,385,766	+		GFF3333	0.51	-0.9
3,385,769	-		GFF3333	0.51	+0.8
3,385,797	+		GFF3333	0.53	-0.4