Strain Fitness in Sphingobium sp. HT1-2 around GFF3243

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,297,974	+		GFF3241	0.79	-2.3
3,297,987	+		GFF3241	0.80	-2.3
3,297,987	+		GFF3241	0.80	-2.0
3,297,987	+		GFF3241	0.80	+0.4
3,297,994	+		GFF3241	0.81	-2.7
3,297,994	+		GFF3241	0.81	-1.9
3,297,994	+		GFF3241	0.81	-2.5
3,297,995	-		GFF3241	0.81	-3.3
3,297,995	-		GFF3241	0.81	-1.9
3,297,995	-		GFF3241	0.81	-1.6
3,297,995	-		GFF3241	0.81	-0.2
3,298,002	-		GFF3241	0.81	-1.4
3,298,002	-		GFF3241	0.81	-2.3
3,298,007	-		GFF3241	0.82	-2.6
3,298,056	+		GFF3241	0.86	-2.5
3,298,078	-		GFF3241	0.87	-2.6
3,298,091	-		GFF3241	0.88	-1.7
3,298,097	+		GFF3241	0.89	-1.7
3,298,123	+				-1.8
3,298,123	+				-2.3
3,298,131	-				-2.1
3,298,133	-				-2.5
3,298,135	+				-1.7
3,298,135	+				-1.4
3,298,135	+				-1.9
3,298,143	-				-2.1
3,298,143	-				-2.6
3,298,143	-				-2.6
3,298,155	+				-2.1
3,298,190	-				-0.3
3,298,228	+				-1.9
3,298,248	+				-1.9
3,298,256	+				-0.7
3,298,256	-				+0.1
3,298,256	-				-0.9
3,298,257	-				+0.9
3,298,268	+				-1.7
3,298,268	+				-1.8
3,298,268	+				-1.9
3,298,268	+				+1.3
3,298,268	+				+0.2
3,298,268	+				-2.0
3,298,276	-				-1.9
3,298,276	-				-4.0
3,298,276	-				-2.1
3,298,276	-				-2.4
3,298,303	+		GFF3242	0.11	-1.4
3,298,303	+		GFF3242	0.11	+0.2
3,298,311	-		GFF3242	0.12	-2.3
3,298,311	-		GFF3242	0.12	-1.6
3,298,323	+		GFF3242	0.14	-2.1
3,298,343	+		GFF3242	0.17	-1.5
3,298,366	-		GFF3242	0.20	-1.6
3,298,376	+		GFF3242	0.22	-1.6
3,298,376	+		GFF3242	0.22	-1.0
3,298,399	-		GFF3242	0.25	-3.4
3,298,433	-		GFF3242	0.30	-2.7
3,298,544	-		GFF3242	0.47	-1.4
3,298,551	-		GFF3242	0.48	-1.8
3,298,551	-		GFF3242	0.48	-1.4
3,298,565	+		GFF3242	0.50	-2.7
3,298,618	-		GFF3242	0.58	-1.5
3,298,620	-		GFF3242	0.59	-2.2
3,298,620	-		GFF3242	0.59	-1.7
3,298,662	+		GFF3242	0.65	-1.4
3,298,667	+		GFF3242	0.66	-2.4
3,298,670	-		GFF3242	0.66	-2.4
3,298,670	-		GFF3242	0.66	-2.2
3,298,676	+		GFF3242	0.67	-2.4
3,298,676	+		GFF3242	0.67	-4.5
3,298,681	+		GFF3242	0.68	-1.7
3,298,681	+		GFF3242	0.68	-2.0
3,298,681	+		GFF3242	0.68	-2.2
3,298,684	-		GFF3242	0.68	-1.4
3,298,689	-		GFF3242	0.69	-2.3
3,298,689	-		GFF3242	0.69	-3.5
3,298,689	-		GFF3242	0.69	-2.3
3,298,689	-		GFF3242	0.69	-2.2
3,298,689	-		GFF3242	0.69	-2.1
3,298,689	-		GFF3242	0.69	-2.3
3,298,694	-		GFF3242	0.70	-2.5
3,298,694	-		GFF3242	0.70	-1.5
3,298,701	-		GFF3242	0.71	-2.2
3,298,716	+		GFF3242	0.73	-1.9
3,298,716	+		GFF3242	0.73	-0.6
3,298,716	+		GFF3242	0.73	-1.6
3,298,724	-		GFF3242	0.74	-1.5
3,298,773	+		GFF3242	0.82	-1.9
3,298,815	-		GFF3242	0.88	-2.5
3,298,829	+				-2.3
3,298,829	+				-1.6
3,298,842	-				-2.8
3,298,845	+				-2.9
3,298,853	+				-2.3
3,298,860	-				-3.2
3,298,897	-				+0.9
3,298,897	-				+0.5
3,298,911	-				-2.3
3,298,972	-				-2.1
3,298,979	+				-0.4
3,298,979	+				-1.1
3,298,981	+				-1.1
3,298,987	-				+0.3
3,298,987	-				+0.5
3,298,987	-				+0.7
3,298,989	-				+0.5
3,298,994	+				-0.1
3,299,022	-				+1.3
3,299,034	-				-0.5
3,299,055	+				-1.4
3,299,063	-				-0.3
3,299,063	-				+0.8
3,299,076	+				-0.5
3,299,094	-				-0.6
3,299,098	+				-0.7
3,299,128	-		GFF3243	0.11	-0.9
3,299,134	-		GFF3243	0.12	+0.6
3,299,135	+		GFF3243	0.12	+0.9
3,299,154	+		GFF3243	0.13	+1.2
3,299,167	-		GFF3243	0.14	+1.4
3,299,174	+		GFF3243	0.15	-2.1
3,299,183	-		GFF3243	0.15	-1.5
3,299,250	-		GFF3243	0.20	+1.2
3,299,261	+		GFF3243	0.21	-0.6
3,299,261	+		GFF3243	0.21	-0.1
3,299,278	+		GFF3243	0.22	-0.3
3,299,278	+		GFF3243	0.22	-2.5
3,299,284	-		GFF3243	0.22	-1.4
3,299,285	+		GFF3243	0.22	+0.9
3,299,288	-		GFF3243	0.22	+0.4
3,299,292	+		GFF3243	0.23	-0.1
3,299,343	-		GFF3243	0.26	-0.1
3,299,343	-		GFF3243	0.26	+0.1
3,299,343	-		GFF3243	0.26	-1.1
3,299,343	-		GFF3243	0.26	+0.8
3,299,343	-		GFF3243	0.26	+0.7
3,299,344	-		GFF3243	0.26	-0.6
3,299,356	-		GFF3243	0.27	+0.2
3,299,361	-		GFF3243	0.27	+0.0
3,299,402	-		GFF3243	0.30	+0.7
3,299,431	+		GFF3243	0.32	+0.4
3,299,459	+		GFF3243	0.34	-1.4
3,299,464	+		GFF3243	0.34	-1.6
3,299,467	-		GFF3243	0.35	-1.8
3,299,472	+		GFF3243	0.35	+1.2
3,299,477	+		GFF3243	0.35	-0.4
3,299,477	+		GFF3243	0.35	-1.6
3,299,490	-		GFF3243	0.36	-1.7
3,299,494	-		GFF3243	0.36	-1.1
3,299,521	+		GFF3243	0.38	-0.3
3,299,521	+		GFF3243	0.38	+0.7
3,299,524	-		GFF3243	0.39	+0.3
3,299,529	-		GFF3243	0.39	-0.3
3,299,529	-		GFF3243	0.39	+0.8
3,299,529	-		GFF3243	0.39	+0.7
3,299,529	-		GFF3243	0.39	+0.0
3,299,549	+		GFF3243	0.40	+1.0
3,299,550	+		GFF3243	0.40	+0.9
3,299,564	-		GFF3243	0.41	-0.3
3,299,572	+		GFF3243	0.42	+0.1
3,299,572	+		GFF3243	0.42	+0.6
3,299,580	-		GFF3243	0.42	+0.8
3,299,582	+		GFF3243	0.42	+0.3
3,299,582	+		GFF3243	0.42	-0.0
3,299,582	+		GFF3243	0.42	-0.9
3,299,582	+		GFF3243	0.42	-0.1
3,299,582	+		GFF3243	0.42	-1.7
3,299,582	+		GFF3243	0.42	+0.0
3,299,585	-		GFF3243	0.43	+1.3
3,299,590	-		GFF3243	0.43	+0.8
3,299,590	-		GFF3243	0.43	-0.1
3,299,590	-		GFF3243	0.43	+1.1
3,299,590	-		GFF3243	0.43	+0.0
3,299,590	-		GFF3243	0.43	-0.1
3,299,598	+		GFF3243	0.44	-1.0
3,299,598	+		GFF3243	0.44	-1.2
3,299,598	+		GFF3243	0.44	+0.5
3,299,598	+		GFF3243	0.44	-1.0
3,299,598	+		GFF3243	0.44	+0.2
3,299,635	-		GFF3243	0.46	-0.3
3,299,637	-		GFF3243	0.46	-0.2
3,299,645	-		GFF3243	0.47	-1.1
3,299,647	-		GFF3243	0.47	-0.5
3,299,647	-		GFF3243	0.47	+0.7
3,299,653	+		GFF3243	0.47	+1.1
3,299,653	+		GFF3243	0.47	-0.5
3,299,658	+		GFF3243	0.48	-0.5
3,299,661	-		GFF3243	0.48	-1.1
3,299,661	-		GFF3243	0.48	+0.3
3,299,661	-		GFF3243	0.48	+0.5
3,299,666	-		GFF3243	0.48	+0.4
3,299,677	-		GFF3243	0.49	+0.6
3,299,696	+		GFF3243	0.50	-0.3
3,299,696	+		GFF3243	0.50	+1.2
3,299,704	+		GFF3243	0.51	+0.6
3,299,704	-		GFF3243	0.51	-0.8
3,299,704	-		GFF3243	0.51	+0.2
3,299,709	-		GFF3243	0.51	+0.0
3,299,725	+		GFF3243	0.52	-0.3
3,299,735	+		GFF3243	0.53	-0.4
3,299,740	+		GFF3243	0.53	-0.4
3,299,740	+		GFF3243	0.53	+0.3
3,299,740	+		GFF3243	0.53	-1.6
3,299,740	+		GFF3243	0.53	-1.2
3,299,743	-		GFF3243	0.53	-0.1
3,299,743	-		GFF3243	0.53	+0.1
3,299,748	-		GFF3243	0.54	-1.0
3,299,748	-		GFF3243	0.54	-0.1
3,299,769	-		GFF3243	0.55	-3.1
3,299,798	+		GFF3243	0.57	-0.4
3,299,804	+		GFF3243	0.58	+1.0
3,299,805	-		GFF3243	0.58	+0.7
3,299,805	-		GFF3243	0.58	-0.8
3,299,806	-		GFF3243	0.58	-0.5
3,299,806	-		GFF3243	0.58	-0.8
3,299,806	-		GFF3243	0.58	+0.4
3,299,807	-		GFF3243	0.58	-1.3
3,299,812	-		GFF3243	0.58	-1.4
3,299,813	+		GFF3243	0.58	-1.4
3,299,821	-		GFF3243	0.59	-0.1
3,299,831	-		GFF3243	0.59	-0.1
3,299,838	+		GFF3243	0.60	+0.3
3,299,838	+		GFF3243	0.60	-0.1
3,299,838	+		GFF3243	0.60	-1.6
3,299,838	+		GFF3243	0.60	-0.9
3,299,838	+		GFF3243	0.60	-1.2
3,299,838	+		GFF3243	0.60	-0.3
3,299,838	+		GFF3243	0.60	-0.3
3,299,838	+		GFF3243	0.60	+0.4
3,299,838	+		GFF3243	0.60	-0.1
3,299,838	+		GFF3243	0.60	-0.8
3,299,838	+		GFF3243	0.60	-0.4
3,299,838	+		GFF3243	0.60	-0.5
3,299,838	+		GFF3243	0.60	-1.2
3,299,838	+		GFF3243	0.60	-0.0
3,299,838	+		GFF3243	0.60	+0.6
3,299,843	+		GFF3243	0.60	-0.9
3,299,846	-		GFF3243	0.61	+0.5
3,299,846	-		GFF3243	0.61	+0.7
3,299,846	-		GFF3243	0.61	+0.3
3,299,846	-		GFF3243	0.61	+1.2
3,299,846	-		GFF3243	0.61	+0.4
3,299,846	-		GFF3243	0.61	-0.1
3,299,846	-		GFF3243	0.61	-0.6
3,299,846	-		GFF3243	0.61	-0.7
3,299,846	-		GFF3243	0.61	+0.1
3,299,846	-		GFF3243	0.61	-1.1
3,299,846	-		GFF3243	0.61	-1.1
3,299,846	-		GFF3243	0.61	-0.7
3,299,848	-		GFF3243	0.61	+0.3
3,299,863	-		GFF3243	0.62	+0.7
3,299,863	-		GFF3243	0.62	+0.2
3,299,878	-		GFF3243	0.63	-0.1
3,299,891	+		GFF3243	0.64	-0.8
3,299,906	-		GFF3243	0.65	+0.0
3,299,922	+		GFF3243	0.66	-0.5
3,299,941	-		GFF3243	0.67	+0.6
3,299,954	+		GFF3243	0.68	-1.3
3,299,967	+		GFF3243	0.69	+0.2
3,299,984	+		GFF3243	0.70	-0.1
3,299,991	-		GFF3243	0.70	+1.0
3,299,997	-		GFF3243	0.71	+0.2
3,300,019	+		GFF3243	0.72	-0.4
3,300,023	+		GFF3243	0.73	-0.2
3,300,040	+		GFF3243	0.74	+0.4
3,300,040	-		GFF3243	0.74	+0.0
3,300,042	+		GFF3243	0.74	+0.1
3,300,042	+		GFF3243	0.74	-3.1
3,300,134	+		GFF3243	0.80	+0.8
3,300,134	+		GFF3243	0.80	-0.4
3,300,142	+		GFF3243	0.81	-0.5
3,300,150	-		GFF3243	0.81	-0.4
3,300,165	+		GFF3243	0.82	-1.6
3,300,173	-		GFF3243	0.83	-0.9
3,300,223	+		GFF3243	0.86	+1.3
3,300,223	+		GFF3243	0.86	-0.9
3,300,223	-		GFF3243	0.86	-0.3
3,300,243	-		GFF3243	0.88	-0.8
3,300,261	+		GFF3243	0.89	-0.7
3,300,269	-		GFF3243	0.89	+0.6
3,300,269	-		GFF3243	0.89	-0.2
3,300,277	+				+0.2
3,300,285	-				-1.4
3,300,334	+				+0.1
3,300,342	-				+0.7
3,300,342	-				-1.1
3,300,351	-				-0.2
3,300,359	-				-1.1
3,300,369	-				-1.7
3,300,392	-				-0.4
3,300,397	-				-0.3
3,300,447	+				-0.1
3,300,449	+				+0.2
3,300,449	+				-0.0
3,300,457	-				+0.0
3,300,464	+				-0.8
3,300,512	-				+0.7
3,300,522	+				-1.0
3,300,522	+				+0.9
3,300,522	+				-0.4
3,300,530	-				+1.8
3,300,530	-				+0.6
3,300,531	+				+0.2
3,300,546	+				-0.0
3,300,546	+				+0.1
3,300,554	-				-1.8
3,300,554	-				-0.3
3,300,564	-				+1.1