Strain Fitness in Sphingobium sp. HT1-2 around GFF3237

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,292,030	+		GFF3236	0.54	-0.8
3,292,030	+		GFF3236	0.54	-1.0
3,292,038	-		GFF3236	0.54	+1.9
3,292,055	-		GFF3236	0.55	+1.5
3,292,055	-		GFF3236	0.55	-0.1
3,292,055	-		GFF3236	0.55	-1.5
3,292,063	-		GFF3236	0.56	-0.1
3,292,066	+		GFF3236	0.56	+0.8
3,292,066	+		GFF3236	0.56	+1.1
3,292,066	+		GFF3236	0.56	-0.3
3,292,066	+		GFF3236	0.56	-1.3
3,292,074	+		GFF3236	0.56	-1.7
3,292,074	-		GFF3236	0.56	-0.1
3,292,074	-		GFF3236	0.56	+0.0
3,292,074	-		GFF3236	0.56	-1.8
3,292,074	-		GFF3236	0.56	+0.1
3,292,074	-		GFF3236	0.56	+0.8
3,292,074	-		GFF3236	0.56	-1.1
3,292,074	-		GFF3236	0.56	-2.1
3,292,074	-		GFF3236	0.56	-0.6
3,292,074	-		GFF3236	0.56	+0.4
3,292,074	-		GFF3236	0.56	-2.3
3,292,074	-		GFF3236	0.56	-2.0
3,292,081	+		GFF3236	0.57	-0.1
3,292,112	-		GFF3236	0.58	-1.3
3,292,125	-		GFF3236	0.59	-2.3
3,292,141	+		GFF3236	0.60	+0.1
3,292,146	+		GFF3236	0.60	-1.6
3,292,146	+		GFF3236	0.60	-0.5
3,292,146	+		GFF3236	0.60	-0.4
3,292,146	+		GFF3236	0.60	-3.0
3,292,146	+		GFF3236	0.60	+0.4
3,292,146	+		GFF3236	0.60	+0.1
3,292,146	+		GFF3236	0.60	+1.5
3,292,154	-		GFF3236	0.60	-0.6
3,292,154	-		GFF3236	0.60	-1.5
3,292,154	-		GFF3236	0.60	-0.1
3,292,154	-		GFF3236	0.60	-0.3
3,292,154	-		GFF3236	0.60	-0.4
3,292,154	-		GFF3236	0.60	-0.2
3,292,154	-		GFF3236	0.60	+0.3
3,292,156	+		GFF3236	0.60	+0.3
3,292,164	-		GFF3236	0.61	-1.2
3,292,194	+		GFF3236	0.62	+0.8
3,292,194	+		GFF3236	0.62	+1.4
3,292,197	-		GFF3236	0.62	-0.6
3,292,238	-		GFF3236	0.64	+0.3
3,292,264	+		GFF3236	0.66	+0.0
3,292,272	-		GFF3236	0.66	+1.1
3,292,276	+		GFF3236	0.66	+1.1
3,292,276	+		GFF3236	0.66	+0.4
3,292,276	+		GFF3236	0.66	-2.0
3,292,279	-		GFF3236	0.67	+0.5
3,292,280	+		GFF3236	0.67	+0.3
3,292,280	+		GFF3236	0.67	-1.1
3,292,311	-		GFF3236	0.68	+0.0
3,292,316	+		GFF3236	0.68	-0.9
3,292,321	-		GFF3236	0.69	-0.2
3,292,344	+		GFF3236	0.70	-0.8
3,292,372	-		GFF3236	0.71	-1.5
3,292,372	-		GFF3236	0.71	-0.9
3,292,372	-		GFF3236	0.71	+1.2
3,292,374	+		GFF3236	0.71	-1.5
3,292,418	+		GFF3236	0.73	-1.1
3,292,430	-		GFF3236	0.74	-0.1
3,292,461	+		GFF3236	0.76	+0.9
3,292,505	-		GFF3236	0.78	-1.5
3,292,505	-		GFF3236	0.78	-1.1
3,292,509	+		GFF3236	0.78	+0.7
3,292,516	+		GFF3236	0.78	+0.9
3,292,516	+		GFF3236	0.78	-1.7
3,292,520	+		GFF3236	0.79	+0.4
3,292,524	-		GFF3236	0.79	+0.7
3,292,562	+		GFF3236	0.81	-0.2
3,292,562	+		GFF3236	0.81	-0.0
3,292,562	+		GFF3236	0.81	+0.2
3,292,562	+		GFF3236	0.81	-0.6
3,292,563	+		GFF3236	0.81	-0.5
3,292,563	+		GFF3236	0.81	-0.9
3,292,563	+		GFF3236	0.81	-1.7
3,292,563	+		GFF3236	0.81	-0.1
3,292,563	+		GFF3236	0.81	+0.5
3,292,563	+		GFF3236	0.81	-0.4
3,292,563	+		GFF3236	0.81	-0.2
3,292,565	-		GFF3236	0.81	+0.1
3,292,568	+		GFF3236	0.81	+0.4
3,292,568	+		GFF3236	0.81	-1.0
3,292,568	+		GFF3236	0.81	+0.7
3,292,571	-		GFF3236	0.81	+0.3
3,292,571	-		GFF3236	0.81	-0.7
3,292,571	-		GFF3236	0.81	-2.1
3,292,576	-		GFF3236	0.81	+0.1
3,292,590	-		GFF3236	0.82	+1.2
3,292,614	+		GFF3236	0.83	-0.7
3,292,632	+		GFF3236	0.84	+0.1
3,292,640	-		GFF3236	0.85	-0.0
3,292,647	-		GFF3236	0.85	-0.1
3,292,654	+		GFF3236	0.85	+2.0
3,292,654	+		GFF3236	0.85	-0.6
3,292,654	+		GFF3236	0.85	-0.3
3,292,662	-		GFF3236	0.86	+1.0
3,292,662	-		GFF3236	0.86	-0.3
3,292,662	-		GFF3236	0.86	+0.1
3,292,676	+		GFF3236	0.86	-0.5
3,292,692	-		GFF3236	0.87	-0.2
3,292,718	-		GFF3236	0.89	-1.5
3,292,718	-		GFF3236	0.89	+1.3
3,292,749	+				-0.2
3,292,757	-				+0.1
3,292,761	+				+0.9
3,292,780	+				-1.1
3,292,780	+				-0.7
3,292,790	+				-1.1
3,292,790	+				-0.3
3,292,800	+				-0.8
3,292,805	+				-0.1
3,292,808	-				+0.3
3,292,808	-				+1.0
3,292,808	-				+0.8
3,292,813	-				-1.7
3,292,813	-				+0.7
3,292,814	-				-0.1
3,292,826	+				-2.3
3,292,826	+				+0.3
3,292,826	+				-1.8
3,292,828	+				+0.1
3,292,828	+				-0.3
3,292,834	-				+0.3
3,292,834	-				-2.3
3,292,834	-				-2.1
3,292,834	-				+1.8
3,292,834	-				+0.3
3,292,834	-				-1.1
3,292,836	-				+0.3
3,292,836	-				-0.2
3,292,836	-				+1.5
3,292,836	-				-0.6
3,292,864	-				-0.6
3,292,868	+				+0.1
3,292,876	+				-0.3
3,292,932	+				-2.0
3,292,949	-				-0.3
3,292,949	-				+0.4
3,292,969	+				-0.4
3,292,969	+				-2.1
3,292,969	+				+0.7
3,292,969	+				+0.7
3,293,011	-				-0.3
3,293,027	+				+0.3
3,293,052	+				+1.6
3,293,060	-				-0.1
3,293,077	+				-0.0
3,293,082	+				+0.3
3,293,101	+				+0.2
3,293,127	+				-1.7
3,293,127	+				+0.6
3,293,139	+				-1.7
3,293,147	-				-0.6
3,293,152	-				+0.1
3,293,175	-				+0.1
3,293,184	+				+0.2
3,293,192	-				-2.3
3,293,197	-				+0.2
3,293,197	-				+1.0
3,293,198	+				-0.1
3,293,231	-		GFF3237	0.11	-0.1
3,293,231	-		GFF3237	0.11	-0.0
3,293,231	-		GFF3237	0.11	-1.0
3,293,231	-		GFF3237	0.11	-0.2
3,293,231	-		GFF3237	0.11	+0.1
3,293,231	-		GFF3237	0.11	+0.8
3,293,233	+		GFF3237	0.11	-1.3
3,293,233	+		GFF3237	0.11	-0.1
3,293,241	-		GFF3237	0.11	-0.4
3,293,280	+		GFF3237	0.13	-0.3
3,293,280	-		GFF3237	0.13	+1.3
3,293,287	-		GFF3237	0.14	-1.6
3,293,293	-		GFF3237	0.14	+0.6
3,293,293	-		GFF3237	0.14	-0.2
3,293,312	+		GFF3237	0.15	-1.6
3,293,337	+		GFF3237	0.16	+0.7
3,293,352	+		GFF3237	0.17	-2.1
3,293,397	-		GFF3237	0.19	-0.5
3,293,421	+		GFF3237	0.20	-0.0
3,293,429	-		GFF3237	0.20	+1.1
3,293,466	+		GFF3237	0.22	+0.1
3,293,466	+		GFF3237	0.22	+1.3
3,293,466	+		GFF3237	0.22	-0.1
3,293,474	-		GFF3237	0.22	+1.3
3,293,474	-		GFF3237	0.22	-0.0
3,293,474	-		GFF3237	0.22	-0.1
3,293,474	-		GFF3237	0.22	+0.3
3,293,474	-		GFF3237	0.22	-1.4
3,293,474	-		GFF3237	0.22	+1.4
3,293,474	-		GFF3237	0.22	-0.5
3,293,474	-		GFF3237	0.22	+0.1
3,293,474	-		GFF3237	0.22	-0.1
3,293,474	-		GFF3237	0.22	-1.2
3,293,474	-		GFF3237	0.22	-0.7
3,293,522	-		GFF3237	0.25	-0.4
3,293,522	-		GFF3237	0.25	+0.1
3,293,531	-		GFF3237	0.25	+0.3
3,293,531	-		GFF3237	0.25	-0.3
3,293,531	-		GFF3237	0.25	-0.1
3,293,532	-		GFF3237	0.25	+0.7
3,293,534	-		GFF3237	0.25	+0.7
3,293,541	+		GFF3237	0.25	-0.6
3,293,551	+		GFF3237	0.26	+1.4
3,293,568	+		GFF3237	0.27	-0.7
3,293,568	+		GFF3237	0.27	-0.1
3,293,568	+		GFF3237	0.27	-1.6
3,293,568	+		GFF3237	0.27	+0.7
3,293,568	+		GFF3237	0.27	+0.0
3,293,568	+		GFF3237	0.27	-1.0
3,293,568	+		GFF3237	0.27	-0.7
3,293,568	+		GFF3237	0.27	+1.1
3,293,576	-		GFF3237	0.27	+1.2
3,293,576	-		GFF3237	0.27	-1.8
3,293,576	-		GFF3237	0.27	-1.6
3,293,576	-		GFF3237	0.27	+0.6
3,293,576	-		GFF3237	0.27	-0.6
3,293,576	-		GFF3237	0.27	+1.5
3,293,576	-		GFF3237	0.27	-0.2
3,293,576	-		GFF3237	0.27	-0.1
3,293,576	-		GFF3237	0.27	-0.2
3,293,576	-		GFF3237	0.27	-0.5
3,293,578	+		GFF3237	0.27	-1.6
3,293,578	+		GFF3237	0.27	+0.9
3,293,578	+		GFF3237	0.27	+1.1
3,293,578	+		GFF3237	0.27	+0.6
3,293,586	-		GFF3237	0.28	-0.6
3,293,586	-		GFF3237	0.28	-3.0
3,293,586	-		GFF3237	0.28	-0.5
3,293,586	-		GFF3237	0.28	+0.9
3,293,586	-		GFF3237	0.28	-1.1
3,293,600	-		GFF3237	0.28	-0.5
3,293,640	-		GFF3237	0.30	-1.2
3,293,643	+		GFF3237	0.30	-1.4
3,293,651	-		GFF3237	0.31	+0.1
3,293,685	+		GFF3237	0.32	-1.6
3,293,691	+		GFF3237	0.33	-1.0
3,293,691	+		GFF3237	0.33	+0.4
3,293,693	-		GFF3237	0.33	-1.3
3,293,699	-		GFF3237	0.33	+0.4
3,293,712	-		GFF3237	0.34	-0.5
3,293,712	-		GFF3237	0.34	-1.0
3,293,714	+		GFF3237	0.34	+0.3
3,293,714	+		GFF3237	0.34	+1.7
3,293,739	+		GFF3237	0.35	+0.1
3,293,739	+		GFF3237	0.35	-0.8
3,293,739	+		GFF3237	0.35	-1.3
3,293,739	+		GFF3237	0.35	-1.8
3,293,746	+		GFF3237	0.35	-0.2
3,293,746	+		GFF3237	0.35	-0.3
3,293,747	-		GFF3237	0.35	-1.0
3,293,747	-		GFF3237	0.35	-1.3
3,293,747	-		GFF3237	0.35	+1.3
3,293,747	-		GFF3237	0.35	+0.4
3,293,747	-		GFF3237	0.35	-0.3
3,293,754	-		GFF3237	0.35	+0.6
3,293,756	+		GFF3237	0.36	-1.5
3,293,764	-		GFF3237	0.36	+0.3
3,293,784	+		GFF3237	0.37	-0.2
3,293,791	+		GFF3237	0.37	-0.3
3,293,806	+		GFF3237	0.38	+0.7
3,293,806	+		GFF3237	0.38	-2.1
3,293,813	+		GFF3237	0.38	+1.1
3,293,814	-		GFF3237	0.38	-0.7
3,293,815	-		GFF3237	0.38	-1.0
3,293,838	+		GFF3237	0.39	+0.1
3,293,840	-		GFF3237	0.40	-0.0
3,293,840	-		GFF3237	0.40	-0.3
3,293,840	-		GFF3237	0.40	+2.2
3,293,876	+		GFF3237	0.41	+0.4
3,293,879	-		GFF3237	0.41	-0.6
3,293,884	-		GFF3237	0.42	+1.2
3,293,884	-		GFF3237	0.42	+1.7
3,293,898	-		GFF3237	0.42	-0.8
3,293,933	-		GFF3237	0.44	-0.5
3,293,944	+		GFF3237	0.44	+0.3
3,293,962	-		GFF3237	0.45	+1.0
3,293,963	+		GFF3237	0.45	-0.0
3,294,076	+		GFF3237	0.51	+0.3
3,294,076	+		GFF3237	0.51	-1.7
3,294,076	+		GFF3237	0.51	-1.4
3,294,082	+		GFF3237	0.51	+0.2
3,294,084	-		GFF3237	0.51	+0.4
3,294,084	-		GFF3237	0.51	+0.2
3,294,084	-		GFF3237	0.51	-1.6
3,294,090	-		GFF3237	0.51	-1.5
3,294,090	-		GFF3237	0.51	+1.0
3,294,096	+		GFF3237	0.52	-1.7
3,294,096	+		GFF3237	0.52	-1.3
3,294,096	+		GFF3237	0.52	+0.4
3,294,096	+		GFF3237	0.52	-0.3
3,294,096	-		GFF3237	0.52	-0.2
3,294,101	+		GFF3237	0.52	-1.3
3,294,101	+		GFF3237	0.52	-0.3
3,294,101	+		GFF3237	0.52	+0.3
3,294,101	+		GFF3237	0.52	+0.5
3,294,104	-		GFF3237	0.52	-0.1
3,294,104	-		GFF3237	0.52	+0.4
3,294,109	-		GFF3237	0.52	+0.5
3,294,109	-		GFF3237	0.52	-0.7
3,294,109	-		GFF3237	0.52	-2.1
3,294,109	-		GFF3237	0.52	-0.7
3,294,109	-		GFF3237	0.52	-0.1
3,294,109	-		GFF3237	0.52	+0.5
3,294,109	-		GFF3237	0.52	-0.0
3,294,109	-		GFF3237	0.52	-1.1
3,294,109	-		GFF3237	0.52	+0.2
3,294,109	-		GFF3237	0.52	+1.0
3,294,112	+		GFF3237	0.52	+1.0
3,294,120	-		GFF3237	0.53	+0.3
3,294,123	-		GFF3237	0.53	-1.4
3,294,125	-		GFF3237	0.53	+1.7
3,294,133	+		GFF3237	0.53	-1.6
3,294,134	+		GFF3237	0.53	-0.8
3,294,144	+		GFF3237	0.54	+0.1
3,294,144	+		GFF3237	0.54	+0.6
3,294,144	+		GFF3237	0.54	-0.6
3,294,144	+		GFF3237	0.54	+0.1
3,294,152	-		GFF3237	0.54	+0.2
3,294,152	-		GFF3237	0.54	-0.9
3,294,154	-		GFF3237	0.54	-0.5
3,294,167	+		GFF3237	0.55	+0.6
3,294,172	+		GFF3237	0.55	-0.9
3,294,174	+		GFF3237	0.55	-0.0
3,294,180	-		GFF3237	0.56	-1.0
3,294,219	-		GFF3237	0.57	-0.3
3,294,231	+		GFF3237	0.58	+0.7
3,294,231	+		GFF3237	0.58	+0.4
3,294,231	+		GFF3237	0.58	+0.5
3,294,231	+		GFF3237	0.58	-0.0
3,294,231	+		GFF3237	0.58	-2.0
3,294,231	+		GFF3237	0.58	+0.3
3,294,231	+		GFF3237	0.58	-1.5
3,294,231	+		GFF3237	0.58	-1.0
3,294,231	+		GFF3237	0.58	-0.4
3,294,231	+		GFF3237	0.58	-0.7
3,294,231	+		GFF3237	0.58	-0.7
3,294,231	+		GFF3237	0.58	-2.1
3,294,239	-		GFF3237	0.58	-0.3
3,294,239	-		GFF3237	0.58	-1.7
3,294,239	-		GFF3237	0.58	+0.4
3,294,239	-		GFF3237	0.58	+0.9
3,294,239	-		GFF3237	0.58	+0.6
3,294,239	-		GFF3237	0.58	+0.3
3,294,239	-		GFF3237	0.58	-0.7
3,294,239	-		GFF3237	0.58	-0.7
3,294,239	-		GFF3237	0.58	-1.5
3,294,239	-		GFF3237	0.58	+0.6
3,294,267	-		GFF3237	0.60	-1.3
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3,294,939	+				+0.2
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3,294,941	+				+0.3
3,294,957	+				-1.9
3,294,959	+				+0.7
3,294,975	+				-1.0
3,294,975	+				+1.2
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3,294,975	+				+1.8
3,294,975	+				+0.4
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3,294,992	+				+1.6
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3,294,992	+				-1.1
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3,295,000	-				+1.2
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