Strain Fitness in Sphingobium sp. HT1-2 around GFF3200

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,259,814	-		GFF3198	0.90	+1.0
3,259,814	-		GFF3198	0.90	-0.5
3,259,818	+		GFF3198	0.90	-1.0
3,259,824	-				-0.8
3,259,828	+				-2.0
3,259,828	+				-0.4
3,259,828	+				-0.4
3,259,828	+				-2.0
3,259,828	+				-0.7
3,259,828	+				-0.2
3,259,828	+				-0.5
3,259,828	+				-1.5
3,259,828	+				+0.3
3,259,828	+				+0.8
3,259,828	+				+0.0
3,259,828	+				+1.0
3,259,828	+				+0.3
3,259,828	+				-0.0
3,259,833	+				-0.8
3,259,836	-				+0.1
3,259,836	-				-0.7
3,259,836	-				+0.3
3,259,836	-				-0.6
3,259,836	-				+0.5
3,259,836	-				-0.1
3,259,836	-				-0.4
3,259,836	-				+0.8
3,259,836	-				-0.0
3,259,841	-				+1.4
3,259,841	-				+0.6
3,259,841	-				+0.3
3,259,841	-				-0.5
3,259,864	+				-0.7
3,259,864	+				+0.4
3,259,864	+				-0.0
3,259,871	+				+0.1
3,259,877	+				+1.2
3,259,887	+				+0.0
3,259,887	+				-0.2
3,259,887	+				-1.7
3,259,897	+				-0.8
3,259,900	-				-0.4
3,259,906	+				-0.6
3,259,906	+				-0.4
3,259,906	+				-0.4
3,259,914	-				+0.9
3,259,914	-				-0.3
3,259,914	-				-0.1
3,259,920	-				+1.0
3,259,929	+				-0.6
3,259,972	+				-0.4
3,259,984	+				-0.3
3,259,984	+				+0.2
3,259,984	+				-0.1
3,259,984	+				+0.6
3,259,984	+				-0.0
3,259,987	-				+0.0
3,259,987	-				-0.7
3,259,992	-				+1.0
3,260,035	+				-0.7
3,260,043	-				+0.2
3,260,043	-				+0.2
3,260,044	+				-1.0
3,260,045	+				+0.2
3,260,045	+				+0.0
3,260,045	+				+0.1
3,260,052	-				-0.6
3,260,057	+				-0.7
3,260,072	-				-1.4
3,260,128	-				-2.0
3,260,129	-				+0.8
3,260,151	-				+0.3
3,260,166	+				-0.4
3,260,166	+				-0.6
3,260,169	-				-0.2
3,260,179	-				+0.2
3,260,179	-				-2.5
3,260,179	-				-0.4
3,260,211	+		GFF3199	0.14	+0.4
3,260,211	+		GFF3199	0.14	-0.8
3,260,219	+		GFF3199	0.15	-0.0
3,260,219	-		GFF3199	0.15	+1.9
3,260,221	-		GFF3199	0.15	-0.5
3,260,223	+		GFF3199	0.16	-0.8
3,260,234	+		GFF3199	0.18	-1.2
3,260,234	+		GFF3199	0.18	-0.2
3,260,242	-		GFF3199	0.19	-2.2
3,260,242	-		GFF3199	0.19	+1.7
3,260,242	-		GFF3199	0.19	+0.5
3,260,242	-		GFF3199	0.19	-0.1
3,260,242	-		GFF3199	0.19	+0.5
3,260,288	-		GFF3199	0.27	-1.4
3,260,288	-		GFF3199	0.27	-0.2
3,260,307	-		GFF3199	0.30	+0.2
3,260,311	+		GFF3199	0.31	-1.4
3,260,313	-		GFF3199	0.31	-0.2
3,260,321	+		GFF3199	0.32	-1.3
3,260,339	+		GFF3199	0.35	+0.1
3,260,350	+		GFF3199	0.37	+0.0
3,260,367	+		GFF3199	0.40	+0.1
3,260,375	-		GFF3199	0.41	-0.2
3,260,415	+		GFF3199	0.48	-0.1
3,260,423	-		GFF3199	0.49	+0.3
3,260,428	-		GFF3199	0.50	-0.8
3,260,481	+		GFF3199	0.59	-1.0
3,260,487	-		GFF3199	0.60	+0.0
3,260,491	+		GFF3199	0.61	+1.3
3,260,494	-		GFF3199	0.61	-1.2
3,260,494	-		GFF3199	0.61	-0.0
3,260,496	+		GFF3199	0.62	-1.9
3,260,496	+		GFF3199	0.62	+0.5
3,260,496	+		GFF3199	0.62	-0.3
3,260,498	+		GFF3199	0.62	+0.7
3,260,498	+		GFF3199	0.62	-1.5
3,260,498	+		GFF3199	0.62	-0.9
3,260,499	-		GFF3199	0.62	-0.1
3,260,506	-		GFF3199	0.63	+1.1
3,260,526	+		GFF3199	0.67	-0.2
3,260,534	-		GFF3199	0.68	-1.1
3,260,534	-		GFF3199	0.68	+1.7
3,260,558	+		GFF3199	0.72	-1.3
3,260,564	+		GFF3199	0.73	+0.4
3,260,564	+		GFF3199	0.73	+0.8
3,260,566	-		GFF3199	0.74	-0.2
3,260,572	-		GFF3199	0.75	+1.0
3,260,572	-		GFF3199	0.75	+0.8
3,260,583	+		GFF3199	0.76	-0.8
3,260,583	+		GFF3199	0.76	-0.3
3,260,608	-		GFF3199	0.81	-0.7
3,260,619	-		GFF3199	0.82	-0.3
3,260,655	-		GFF3199	0.89	-1.0
3,260,686	+				-0.2
3,260,694	-				+0.8
3,260,694	-				-0.7
3,260,696	-				+0.8
3,260,701	-				-0.3
3,260,729	+				+0.3
3,260,743	+				-0.3
3,260,743	+				-0.8
3,260,743	+				+2.2
3,260,748	+				-0.4
3,260,748	+				+0.9
3,260,748	+				+0.3
3,260,748	+				+0.2
3,260,748	+				+1.1
3,260,751	-				+0.3
3,260,751	-				-0.4
3,260,751	-				+0.8
3,260,756	-				+0.3
3,260,756	-				-1.2
3,260,756	-				-0.5
3,260,756	-				+0.8
3,260,756	-				-1.5
3,260,756	-				-0.4
3,260,769	+				+0.3
3,260,769	+				+1.3
3,260,769	+				+0.2
3,260,769	+				-1.0
3,260,769	+				+0.8
3,260,770	-				+1.0
3,260,770	-				-0.7
3,260,774	+				+0.6
3,260,777	-				+0.3
3,260,777	-				-0.4
3,260,777	-				+1.1
3,260,787	-				+0.1
3,260,787	-				-0.7
3,260,795	-				+0.8
3,260,800	-				-1.1
3,260,810	-				-0.5
3,260,816	+				-1.2
3,260,840	+		GFF3200	0.12	-0.2
3,260,850	-		GFF3200	0.14	+0.1
3,260,859	+		GFF3200	0.17	-1.7
3,260,859	+		GFF3200	0.17	+0.2
3,260,863	+		GFF3200	0.18	+0.3
3,260,863	+		GFF3200	0.18	+0.3
3,260,863	+		GFF3200	0.18	+0.1
3,260,867	-		GFF3200	0.19	-0.6
3,260,867	-		GFF3200	0.19	-0.7
3,260,869	+		GFF3200	0.19	-2.0
3,260,869	+		GFF3200	0.19	-1.5
3,260,869	+		GFF3200	0.19	+0.8
3,260,869	+		GFF3200	0.19	-0.1
3,260,871	-		GFF3200	0.20	+0.4
3,260,877	-		GFF3200	0.21	-0.5
3,260,877	-		GFF3200	0.21	-0.1
3,260,891	+		GFF3200	0.25	-0.0
3,260,958	-		GFF3200	0.42	-0.0
3,260,960	+		GFF3200	0.42	-0.5
3,260,960	-		GFF3200	0.42	-1.0
3,260,987	+		GFF3200	0.49	-0.6
3,260,987	+		GFF3200	0.49	-0.8
3,260,987	+		GFF3200	0.49	+1.1
3,260,987	+		GFF3200	0.49	-0.6
3,260,987	+		GFF3200	0.49	-0.1
3,260,987	+		GFF3200	0.49	-0.2
3,260,987	+		GFF3200	0.49	+0.8
3,260,987	+		GFF3200	0.49	-0.4
3,260,995	-		GFF3200	0.51	+1.0
3,260,995	-		GFF3200	0.51	+2.7
3,260,995	-		GFF3200	0.51	-0.3
3,260,995	-		GFF3200	0.51	-2.1
3,260,997	+		GFF3200	0.52	-0.2
3,261,005	-		GFF3200	0.54	+0.5
3,261,019	-		GFF3200	0.57	-1.3
3,261,019	-		GFF3200	0.57	-0.3
3,261,020	+		GFF3200	0.58	-1.1
3,261,079	+		GFF3200	0.73	+0.1
3,261,089	+		GFF3200	0.75	+0.1
3,261,090	+		GFF3200	0.75	+0.2
3,261,097	-		GFF3200	0.77	+0.1
3,261,097	-		GFF3200	0.77	+0.3
3,261,102	-		GFF3200	0.78	-1.7
3,261,111	+		GFF3200	0.81	-0.9
3,261,181	+				+1.2
3,261,184	-				-1.4
3,261,323	-				-0.4
3,261,324	+				+0.0
3,261,344	-				+0.2
3,261,345	+				+0.5
3,261,356	+				+0.7
3,261,360	+				+0.0
3,261,368	-				+1.4
3,261,393	+		GFF3201	0.13	-0.3
3,261,393	+		GFF3201	0.13	+0.3
3,261,393	+		GFF3201	0.13	-0.4
3,261,393	+		GFF3201	0.13	+1.1
3,261,393	+		GFF3201	0.13	-0.4
3,261,393	+		GFF3201	0.13	+1.1
3,261,393	+		GFF3201	0.13	+0.2
3,261,393	+		GFF3201	0.13	-0.5
3,261,393	+		GFF3201	0.13	+0.0
3,261,406	+		GFF3201	0.26	-0.2
3,261,427	+		GFF3201	0.46	+0.3
3,261,427	+		GFF3201	0.46	-0.4
3,261,442	-		GFF3201	0.60	-1.5
3,261,450	-		GFF3201	0.68	-0.4
3,261,464	+		GFF3201	0.81	+1.0
3,261,482	+				+0.1
3,261,523	+				-2.0
3,261,523	+				+1.2
3,261,523	+				+0.1
3,261,530	+				-0.0
3,261,531	-				-1.2
3,261,541	-				-1.3
3,261,549	+				-0.5
3,261,549	+				-0.6
3,261,551	-				+0.2
3,261,556	-		GFF3202	0.12	-2.0
3,261,571	+		GFF3202	0.20	+0.1
3,261,571	+		GFF3202	0.20	+0.3
3,261,571	+		GFF3202	0.20	+0.1
3,261,571	+		GFF3202	0.20	-1.1
3,261,571	+		GFF3202	0.20	-1.4
3,261,571	+		GFF3202	0.20	+0.3
3,261,571	+		GFF3202	0.20	-1.2
3,261,571	+		GFF3202	0.20	-0.5
3,261,571	+		GFF3202	0.20	-1.9
3,261,571	+		GFF3202	0.20	-1.2
3,261,571	+		GFF3202	0.20	+0.6
3,261,571	+		GFF3202	0.20	+0.9
3,261,571	+		GFF3202	0.20	-0.4
3,261,579	-		GFF3202	0.25	-0.7
3,261,579	-		GFF3202	0.25	-1.3
3,261,579	-		GFF3202	0.25	-1.6
3,261,579	-		GFF3202	0.25	+0.9
3,261,579	-		GFF3202	0.25	+0.0
3,261,579	-		GFF3202	0.25	-0.7
3,261,579	-		GFF3202	0.25	-1.1
3,261,579	-		GFF3202	0.25	-0.2
3,261,581	-		GFF3202	0.26	+1.1
3,261,581	-		GFF3202	0.26	+0.8
3,261,609	+		GFF3202	0.41	+0.5
3,261,615	+		GFF3202	0.44	-0.4
3,261,625	+		GFF3202	0.49	+0.9
3,261,625	+		GFF3202	0.49	+0.4
3,261,630	+		GFF3202	0.52	-0.4
3,261,630	+		GFF3202	0.52	+0.4
3,261,633	-		GFF3202	0.54	-1.0
3,261,635	+		GFF3202	0.55	+1.1
3,261,635	+		GFF3202	0.55	+1.3
3,261,635	+		GFF3202	0.55	+1.2
3,261,638	-		GFF3202	0.56	-0.6
3,261,638	-		GFF3202	0.56	-0.5
3,261,641	+		GFF3202	0.58	+0.0
3,261,649	-		GFF3202	0.62	-2.2
3,261,653	-		GFF3202	0.65	-0.2
3,261,660	+		GFF3202	0.68	+1.1
3,261,660	+		GFF3202	0.68	-0.2
3,261,660	-		GFF3202	0.68	+0.2
3,261,668	-		GFF3202	0.73	-0.6
3,261,668	-		GFF3202	0.73	+0.2
3,261,668	-		GFF3202	0.73	+0.4
3,261,668	-		GFF3202	0.73	-0.2
3,261,668	-		GFF3202	0.73	-0.8
3,261,668	-		GFF3202	0.73	-0.2
3,261,670	+		GFF3202	0.74	-1.2
3,261,685	-		GFF3202	0.82	-1.9
3,261,685	-		GFF3202	0.82	+1.1
3,261,691	-		GFF3202	0.85	-1.5
3,261,706	+				+0.5
3,261,707	+				-0.2
3,261,732	+				-1.5
3,261,771	+				+0.8
3,261,779	-				-0.6
3,261,780	-				-0.5
3,261,785	-				-0.6
3,261,785	-				-0.8
3,261,811	+				-0.6
3,261,811	+				-1.0
3,261,819	-				+0.7
3,261,819	-				+0.1
3,261,825	-				-0.1
3,261,840	-				+1.0
3,261,847	+		GFF3203	0.11	+0.7
3,261,847	+		GFF3203	0.11	-0.8
3,261,848	-		GFF3203	0.12	-0.7
3,261,855	-		GFF3203	0.19	-1.3
3,261,855	-		GFF3203	0.19	-1.1
3,261,855	-		GFF3203	0.19	-1.5
3,261,861	-		GFF3203	0.25	-0.4
3,261,876	-		GFF3203	0.40	-1.6
3,261,878	+		GFF3203	0.42	+0.5
3,261,880	+		GFF3203	0.44	-0.0
3,261,887	+		GFF3203	0.52	+0.4
3,261,895	-		GFF3203	0.60	+0.8
3,261,901	+		GFF3203	0.66	-1.5
3,261,918	+		GFF3203	0.83	+0.2
3,262,061	-				+0.6
3,262,084	+				-1.3
3,262,084	+				-0.7
3,262,092	+				-0.5
3,262,092	-				-0.4
3,262,100	-				+0.6
3,262,100	-				+0.5
3,262,100	-				-2.6
3,262,100	-				-0.3
3,262,121	+		GFF3204	0.11	+0.0
3,262,121	+		GFF3204	0.11	+0.0
3,262,126	+		GFF3204	0.12	-0.2
3,262,129	-		GFF3204	0.12	-1.9
3,262,134	-		GFF3204	0.13	-1.5
3,262,134	-		GFF3204	0.13	-0.4
3,262,134	-		GFF3204	0.13	+0.4
3,262,179	+		GFF3204	0.19	-1.5
3,262,181	-		GFF3204	0.19	-0.5
3,262,183	+		GFF3204	0.20	-0.8