Strain Fitness in Sphingobium sp. HT1-2 around GFF317

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF315 and GFF316 are separated by 40 nucleotidesGFF316 and GFF317 are separated by 2 nucleotidesGFF317 and GFF318 overlap by 1 nucleotidesGFF318 and GFF319 overlap by 11 nucleotides GFF315 - pyridoxal-phosphate dependent enzyme family protein, at 310,882 to 311,874 GFF315 GFF316 - Diaminopimelate epimerase (EC 5.1.1.7), at 311,915 to 312,727 GFF316 GFF317 - tRNA t(6)A37-methylthiotransferase (EC 2.8.4.5), at 312,730 to 313,971 GFF317 GFF318 - Signal recognition particle receptor FtsY, at 313,971 to 314,909 GFF318 GFF319 - Intracellular septation protein IspA, at 314,899 to 315,552 GFF319 Position (kb) 312 313 314Strain fitness (log2 ratio) -2 -1 0 1 2at 311.752 kb on - strand, within GFF315at 311.766 kb on + strand, within GFF315at 311.774 kb on + strand, within GFF315at 311.774 kb on + strand, within GFF315at 311.774 kb on + strand, within GFF315at 311.774 kb on + strand, within GFF315at 311.777 kb on - strandat 311.779 kb on + strandat 311.779 kb on + strandat 311.779 kb on + strandat 311.779 kb on + strandat 311.782 kb on - strandat 311.782 kb on - strandat 311.787 kb on - strandat 311.803 kb on - strandat 311.808 kb on + strandat 311.808 kb on + strandat 311.816 kb on - strandat 311.816 kb on - strandat 311.816 kb on - strandat 311.838 kb on + strandat 311.838 kb on + strandat 311.846 kb on - strandat 311.876 kb on - strandat 311.891 kb on - strandat 311.891 kb on - strandat 311.901 kb on - strandat 311.901 kb on - strandat 311.912 kb on + strandat 311.912 kb on + strandat 312.710 kb on + strandat 312.710 kb on + strandat 312.718 kb on - strandat 312.718 kb on - strandat 312.720 kb on + strandat 312.728 kb on - strandat 312.729 kb on - strandat 312.736 kb on + strandat 312.737 kb on + strandat 312.737 kb on + strandat 312.737 kb on + strandat 312.737 kb on + strandat 312.737 kb on + strandat 312.742 kb on + strandat 312.745 kb on - strandat 312.746 kb on + strandat 312.746 kb on + strandat 312.752 kb on - strandat 312.754 kb on - strandat 312.754 kb on - strandat 312.754 kb on - strandat 312.754 kb on - strandat 312.759 kb on - strandat 312.759 kb on - strandat 312.764 kb on - strandat 312.770 kb on + strandat 312.780 kb on + strandat 312.780 kb on + strandat 312.780 kb on + strandat 312.788 kb on - strandat 312.788 kb on - strandat 312.788 kb on - strandat 312.806 kb on + strandat 312.816 kb on - strandat 312.826 kb on + strandat 312.834 kb on - strandat 312.836 kb on + strandat 312.842 kb on - strandat 312.844 kb on + strandat 312.847 kb on - strandat 312.857 kb on - strand, within GFF317at 312.857 kb on - strand, within GFF317at 312.862 kb on + strand, within GFF317at 312.866 kb on + strand, within GFF317at 312.869 kb on - strand, within GFF317at 312.870 kb on - strand, within GFF317at 312.892 kb on + strand, within GFF317at 312.932 kb on + strand, within GFF317at 312.937 kb on + strand, within GFF317at 312.940 kb on - strand, within GFF317at 312.942 kb on + strand, within GFF317at 312.945 kb on - strand, within GFF317at 312.948 kb on + strand, within GFF317at 312.949 kb on + strand, within GFF317at 312.949 kb on + strand, within GFF317at 312.949 kb on + strand, within GFF317at 312.949 kb on + strand, within GFF317at 312.949 kb on + strand, within GFF317at 312.949 kb on + strand, within GFF317at 312.949 kb on + strand, within GFF317at 312.949 kb on + strand, within GFF317at 312.949 kb on + strand, within GFF317at 312.949 kb on + strand, within GFF317at 312.949 kb on + strand, within GFF317at 312.949 kb on + strand, within GFF317at 312.949 kb on + strand, within GFF317at 312.957 kb on - strand, within GFF317at 312.957 kb on - strand, within GFF317at 312.957 kb on - strand, within GFF317at 312.957 kb on - strand, within GFF317at 312.957 kb on - strand, within GFF317at 312.957 kb on - strand, within GFF317at 312.957 kb on - strand, within GFF317at 312.957 kb on - strand, within GFF317at 312.957 kb on - strand, within GFF317at 313.004 kb on + strand, within GFF317at 313.005 kb on + strand, within GFF317at 313.005 kb on + strand, within GFF317at 313.013 kb on - strand, within GFF317at 313.041 kb on + strand, within GFF317at 313.041 kb on + strand, within GFF317at 313.042 kb on - strand, within GFF317at 313.049 kb on - strand, within GFF317at 313.056 kb on + strand, within GFF317at 313.056 kb on + strand, within GFF317at 313.056 kb on + strand, within GFF317at 313.056 kb on + strand, within GFF317at 313.056 kb on + strand, within GFF317at 313.056 kb on + strand, within GFF317at 313.064 kb on - strand, within GFF317at 313.064 kb on - strand, within GFF317at 313.064 kb on - strand, within GFF317at 313.064 kb on - strand, within GFF317at 313.068 kb on + strand, within GFF317at 313.073 kb on + strand, within GFF317at 313.078 kb on + strand, within GFF317at 313.078 kb on + strand, within GFF317at 313.086 kb on - strand, within GFF317at 313.086 kb on - strand, within GFF317at 313.090 kb on + strand, within GFF317at 313.090 kb on + strand, within GFF317at 313.091 kb on - strand, within GFF317at 313.098 kb on - strand, within GFF317at 313.121 kb on + strand, within GFF317at 313.129 kb on + strand, within GFF317at 313.129 kb on + strand, within GFF317at 313.129 kb on + strand, within GFF317at 313.129 kb on + strand, within GFF317at 313.134 kb on + strand, within GFF317at 313.134 kb on + strand, within GFF317at 313.136 kb on - strand, within GFF317at 313.137 kb on - strand, within GFF317at 313.147 kb on - strand, within GFF317at 313.149 kb on + strand, within GFF317at 313.157 kb on - strand, within GFF317at 313.223 kb on + strand, within GFF317at 313.223 kb on + strand, within GFF317at 313.244 kb on - strand, within GFF317at 313.260 kb on - strand, within GFF317at 313.269 kb on - strand, within GFF317at 313.269 kb on - strand, within GFF317at 313.269 kb on - strand, within GFF317at 313.271 kb on + strand, within GFF317at 313.271 kb on + strand, within GFF317at 313.271 kb on + strand, within GFF317at 313.279 kb on - strand, within GFF317at 313.287 kb on + strand, within GFF317at 313.291 kb on + strand, within GFF317at 313.292 kb on + strand, within GFF317at 313.292 kb on + strand, within GFF317at 313.292 kb on + strand, within GFF317at 313.292 kb on + strand, within GFF317at 313.300 kb on + strand, within GFF317at 313.300 kb on - strand, within GFF317at 313.305 kb on + strand, within GFF317at 313.308 kb on - strand, within GFF317at 313.308 kb on - strand, within GFF317at 313.310 kb on + strand, within GFF317at 313.313 kb on - strand, within GFF317at 313.351 kb on + strand, within GFF317at 313.351 kb on + strand, within GFF317at 313.391 kb on + strand, within GFF317at 313.396 kb on - strand, within GFF317at 313.427 kb on + strand, within GFF317at 313.427 kb on + strand, within GFF317at 313.427 kb on + strand, within GFF317at 313.427 kb on + strand, within GFF317at 313.427 kb on + strand, within GFF317at 313.430 kb on - strand, within GFF317at 313.434 kb on + strand, within GFF317at 313.435 kb on - strand, within GFF317at 313.435 kb on - strand, within GFF317at 313.451 kb on + strand, within GFF317at 313.466 kb on - strand, within GFF317at 313.473 kb on - strand, within GFF317at 313.486 kb on + strand, within GFF317at 313.486 kb on + strand, within GFF317at 313.486 kb on + strand, within GFF317at 313.494 kb on - strand, within GFF317at 313.521 kb on - strand, within GFF317at 313.522 kb on + strand, within GFF317at 313.525 kb on + strand, within GFF317at 313.525 kb on + strand, within GFF317at 313.526 kb on - strand, within GFF317at 313.538 kb on - strand, within GFF317at 313.545 kb on + strand, within GFF317at 313.545 kb on + strand, within GFF317at 313.545 kb on + strand, within GFF317at 313.545 kb on + strand, within GFF317at 313.545 kb on + strand, within GFF317at 313.545 kb on + strand, within GFF317at 313.545 kb on + strand, within GFF317at 313.545 kb on + strand, within GFF317at 313.545 kb on + strand, within GFF317at 313.545 kb on + strand, within GFF317at 313.545 kb on + strand, within GFF317at 313.545 kb on + strand, within GFF317at 313.545 kb on + strand, within GFF317at 313.545 kb on + strand, within GFF317at 313.545 kb on + strand, within GFF317at 313.545 kb on + strand, within GFF317at 313.545 kb on + strand, within GFF317at 313.545 kb on + strand, within GFF317at 313.545 kb on + strand, within GFF317at 313.553 kb on - strand, within GFF317at 313.553 kb on - strand, within GFF317at 313.553 kb on - strand, within GFF317at 313.553 kb on - strand, within GFF317at 313.553 kb on - strand, within GFF317at 313.553 kb on - strand, within GFF317at 313.553 kb on - strand, within GFF317at 313.553 kb on - strand, within GFF317at 313.553 kb on - strand, within GFF317at 313.553 kb on - strand, within GFF317at 313.553 kb on - strand, within GFF317at 313.553 kb on - strand, within GFF317at 313.553 kb on - strand, within GFF317at 313.553 kb on - strand, within GFF317at 313.553 kb on - strand, within GFF317at 313.553 kb on - strand, within GFF317at 313.553 kb on - strand, within GFF317at 313.564 kb on + strand, within GFF317at 313.577 kb on + strand, within GFF317at 313.631 kb on + strand, within GFF317at 313.631 kb on + strand, within GFF317at 313.631 kb on + strand, within GFF317at 313.631 kb on + strand, within GFF317at 313.631 kb on + strand, within GFF317at 313.639 kb on - strand, within GFF317at 313.639 kb on - strand, within GFF317at 313.639 kb on - strand, within GFF317at 313.639 kb on - strand, within GFF317at 313.639 kb on - strand, within GFF317at 313.660 kb on + strand, within GFF317at 313.666 kb on + strand, within GFF317at 313.672 kb on + strand, within GFF317at 313.672 kb on + strand, within GFF317at 313.672 kb on + strand, within GFF317at 313.672 kb on + strand, within GFF317at 313.672 kb on + strand, within GFF317at 313.674 kb on - strand, within GFF317at 313.679 kb on + strand, within GFF317at 313.680 kb on - strand, within GFF317at 313.744 kb on - strand, within GFF317at 313.751 kb on + strand, within GFF317at 313.753 kb on + strand, within GFF317at 313.756 kb on + strand, within GFF317at 313.758 kb on + strand, within GFF317at 313.758 kb on + strand, within GFF317at 313.759 kb on - strand, within GFF317at 313.766 kb on - strand, within GFF317at 313.766 kb on - strand, within GFF317at 313.766 kb on - strand, within GFF317at 313.785 kb on - strand, within GFF317at 313.796 kb on - strand, within GFF317at 313.806 kb on + strand, within GFF317at 313.806 kb on + strand, within GFF317at 313.814 kb on - strand, within GFF317at 313.814 kb on - strand, within GFF317at 313.820 kb on + strand, within GFF317at 313.828 kb on - strand, within GFF317at 313.828 kb on - strand, within GFF317at 313.833 kb on - strand, within GFF317at 313.838 kb on + strand, within GFF317at 313.848 kb on + strandat 313.856 kb on - strandat 313.856 kb on - strandat 313.878 kb on + strandat 313.881 kb on + strandat 313.891 kb on + strandat 313.891 kb on + strandat 313.904 kb on - strandat 313.912 kb on - strandat 313.926 kb on - strandat 313.931 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with D-Glucose and Ammonium Sulfate
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311,752 - GFF315 0.88 +1.5
311,766 + GFF315 0.89 +0.3
311,774 + GFF315 0.90 +0.3
311,774 + GFF315 0.90 -1.2
311,774 + GFF315 0.90 +0.2
311,774 + GFF315 0.90 -1.3
311,777 - -0.6
311,779 + -2.0
311,779 + -1.1
311,779 + +1.1
311,779 + -0.4
311,782 - -0.7
311,782 - +0.9
311,787 - +0.0
311,803 - -0.2
311,808 + -0.5
311,808 + -0.2
311,816 - -0.8
311,816 - -0.4
311,816 - +0.0
311,838 + +0.0
311,838 + -2.7
311,846 - -1.4
311,876 - -0.7
311,891 - -0.6
311,891 - -0.3
311,901 - +0.8
311,901 - -0.6
311,912 + +0.5
311,912 + -0.4
312,710 + -1.7
312,710 + -1.9
312,718 - -1.5
312,718 - -1.9
312,720 + +0.4
312,728 - -0.7
312,729 - -0.7
312,736 + -1.2
312,737 + +0.0
312,737 + +0.0
312,737 + -0.4
312,737 + +0.1
312,737 + +0.2
312,742 + -0.2
312,745 - -0.8
312,746 + -0.9
312,746 + -1.1
312,752 - -0.2
312,754 - +0.9
312,754 - +0.2
312,754 - -0.5
312,754 - +0.4
312,759 - -1.6
312,759 - -1.7
312,764 - -0.3
312,770 + -1.4
312,780 + -0.5
312,780 + -0.8
312,780 + -0.8
312,788 - -0.7
312,788 - +1.0
312,788 - +1.1
312,806 + -1.0
312,816 - -0.5
312,826 + -0.4
312,834 - -0.9
312,836 + +1.4
312,842 - +0.7
312,844 + -0.5
312,847 - +0.8
312,857 - GFF317 0.10 -0.6
312,857 - GFF317 0.10 +0.6
312,862 + GFF317 0.11 -0.2
312,866 + GFF317 0.11 -0.3
312,869 - GFF317 0.11 -0.5
312,870 - GFF317 0.11 -0.5
312,892 + GFF317 0.13 +0.0
312,932 + GFF317 0.16 -0.1
312,937 + GFF317 0.17 +0.1
312,940 - GFF317 0.17 +0.4
312,942 + GFF317 0.17 -0.3
312,945 - GFF317 0.17 -1.5
312,948 + GFF317 0.18 +0.5
312,949 + GFF317 0.18 +0.5
312,949 + GFF317 0.18 -0.9
312,949 + GFF317 0.18 -0.9
312,949 + GFF317 0.18 +0.9
312,949 + GFF317 0.18 -0.4
312,949 + GFF317 0.18 -0.7
312,949 + GFF317 0.18 -0.6
312,949 + GFF317 0.18 -1.6
312,949 + GFF317 0.18 -0.9
312,949 + GFF317 0.18 -1.7
312,949 + GFF317 0.18 +1.2
312,949 + GFF317 0.18 -1.1
312,949 + GFF317 0.18 +0.0
312,957 - GFF317 0.18 -2.3
312,957 - GFF317 0.18 +2.0
312,957 - GFF317 0.18 -0.1
312,957 - GFF317 0.18 -1.2
312,957 - GFF317 0.18 +0.7
312,957 - GFF317 0.18 -1.4
312,957 - GFF317 0.18 -0.4
312,957 - GFF317 0.18 -1.7
312,957 - GFF317 0.18 -0.1
313,004 + GFF317 0.22 +0.3
313,005 + GFF317 0.22 +0.8
313,005 + GFF317 0.22 +1.3
313,013 - GFF317 0.23 -0.6
313,041 + GFF317 0.25 +0.6
313,041 + GFF317 0.25 -0.1
313,042 - GFF317 0.25 -1.4
313,049 - GFF317 0.26 +0.4
313,056 + GFF317 0.26 +0.2
313,056 + GFF317 0.26 +1.5
313,056 + GFF317 0.26 +1.0
313,056 + GFF317 0.26 -0.8
313,056 + GFF317 0.26 +0.9
313,056 + GFF317 0.26 -0.3
313,064 - GFF317 0.27 -1.4
313,064 - GFF317 0.27 +1.0
313,064 - GFF317 0.27 -1.3
313,064 - GFF317 0.27 -0.7
313,068 + GFF317 0.27 -0.7
313,073 + GFF317 0.28 -1.6
313,078 + GFF317 0.28 +0.6
313,078 + GFF317 0.28 +0.3
313,086 - GFF317 0.29 +0.4
313,086 - GFF317 0.29 +1.1
313,090 + GFF317 0.29 -1.6
313,090 + GFF317 0.29 +0.2
313,091 - GFF317 0.29 +0.8
313,098 - GFF317 0.30 -0.2
313,121 + GFF317 0.31 +1.1
313,129 + GFF317 0.32 -2.3
313,129 + GFF317 0.32 -0.4
313,129 + GFF317 0.32 -0.2
313,129 + GFF317 0.32 -0.7
313,134 + GFF317 0.33 -0.2
313,134 + GFF317 0.33 -0.6
313,136 - GFF317 0.33 +0.3
313,137 - GFF317 0.33 +0.7
313,147 - GFF317 0.34 -0.5
313,149 + GFF317 0.34 -0.8
313,157 - GFF317 0.34 +0.0
313,223 + GFF317 0.40 -1.7
313,223 + GFF317 0.40 +0.6
313,244 - GFF317 0.41 +0.9
313,260 - GFF317 0.43 -2.4
313,269 - GFF317 0.43 +0.6
313,269 - GFF317 0.43 -1.3
313,269 - GFF317 0.43 +0.1
313,271 + GFF317 0.44 -0.2
313,271 + GFF317 0.44 -0.8
313,271 + GFF317 0.44 -0.1
313,279 - GFF317 0.44 -0.4
313,287 + GFF317 0.45 +0.3
313,291 + GFF317 0.45 -0.2
313,292 + GFF317 0.45 -0.1
313,292 + GFF317 0.45 +0.3
313,292 + GFF317 0.45 -1.4
313,292 + GFF317 0.45 +0.3
313,300 + GFF317 0.46 -1.1
313,300 - GFF317 0.46 +0.1
313,305 + GFF317 0.46 -0.7
313,308 - GFF317 0.47 +1.8
313,308 - GFF317 0.47 -0.3
313,310 + GFF317 0.47 -0.3
313,313 - GFF317 0.47 -1.1
313,351 + GFF317 0.50 -0.3
313,351 + GFF317 0.50 -0.6
313,391 + GFF317 0.53 +0.3
313,396 - GFF317 0.54 -0.8
313,427 + GFF317 0.56 +0.0
313,427 + GFF317 0.56 +0.3
313,427 + GFF317 0.56 -0.2
313,427 + GFF317 0.56 +0.6
313,427 + GFF317 0.56 +0.3
313,430 - GFF317 0.56 -0.2
313,434 + GFF317 0.57 -0.7
313,435 - GFF317 0.57 -0.1
313,435 - GFF317 0.57 -0.8
313,451 + GFF317 0.58 +0.6
313,466 - GFF317 0.59 +0.8
313,473 - GFF317 0.60 -0.2
313,486 + GFF317 0.61 +0.3
313,486 + GFF317 0.61 +1.2
313,486 + GFF317 0.61 -1.6
313,494 - GFF317 0.62 -0.7
313,521 - GFF317 0.64 -1.1
313,522 + GFF317 0.64 -1.0
313,525 + GFF317 0.64 +0.8
313,525 + GFF317 0.64 -1.2
313,526 - GFF317 0.64 -1.5
313,538 - GFF317 0.65 -0.7
313,545 + GFF317 0.66 -0.0
313,545 + GFF317 0.66 -0.1
313,545 + GFF317 0.66 -0.2
313,545 + GFF317 0.66 +1.1
313,545 + GFF317 0.66 +0.5
313,545 + GFF317 0.66 +0.4
313,545 + GFF317 0.66 +0.0
313,545 + GFF317 0.66 -1.0
313,545 + GFF317 0.66 -1.2
313,545 + GFF317 0.66 -0.3
313,545 + GFF317 0.66 -0.7
313,545 + GFF317 0.66 -2.1
313,545 + GFF317 0.66 +1.1
313,545 + GFF317 0.66 -1.3
313,545 + GFF317 0.66 -0.4
313,545 + GFF317 0.66 -1.7
313,545 + GFF317 0.66 -0.3
313,545 + GFF317 0.66 -0.9
313,545 + GFF317 0.66 -1.3
313,553 - GFF317 0.66 -2.0
313,553 - GFF317 0.66 -1.0
313,553 - GFF317 0.66 +0.5
313,553 - GFF317 0.66 +0.7
313,553 - GFF317 0.66 +0.0
313,553 - GFF317 0.66 +0.3
313,553 - GFF317 0.66 +0.1
313,553 - GFF317 0.66 +0.5
313,553 - GFF317 0.66 -0.6
313,553 - GFF317 0.66 +0.4
313,553 - GFF317 0.66 -0.3
313,553 - GFF317 0.66 +1.1
313,553 - GFF317 0.66 -0.1
313,553 - GFF317 0.66 +0.5
313,553 - GFF317 0.66 +0.6
313,553 - GFF317 0.66 +0.8
313,553 - GFF317 0.66 +0.2
313,564 + GFF317 0.67 +0.7
313,577 + GFF317 0.68 +1.4
313,631 + GFF317 0.73 -0.0
313,631 + GFF317 0.73 +0.1
313,631 + GFF317 0.73 -1.6
313,631 + GFF317 0.73 +1.3
313,631 + GFF317 0.73 +0.7
313,639 - GFF317 0.73 +0.1
313,639 - GFF317 0.73 -0.4
313,639 - GFF317 0.73 +0.7
313,639 - GFF317 0.73 -0.4
313,639 - GFF317 0.73 +0.4
313,660 + GFF317 0.75 +0.7
313,666 + GFF317 0.75 -1.2
313,672 + GFF317 0.76 +0.7
313,672 + GFF317 0.76 -0.6
313,672 + GFF317 0.76 -0.1
313,672 + GFF317 0.76 +1.5
313,672 + GFF317 0.76 +0.5
313,674 - GFF317 0.76 -1.3
313,679 + GFF317 0.76 -0.5
313,680 - GFF317 0.76 -0.8
313,744 - GFF317 0.82 +1.2
313,751 + GFF317 0.82 -0.3
313,753 + GFF317 0.82 -1.3
313,756 + GFF317 0.83 -0.3
313,758 + GFF317 0.83 +0.8
313,758 + GFF317 0.83 +0.2
313,759 - GFF317 0.83 -0.6
313,766 - GFF317 0.83 +0.9
313,766 - GFF317 0.83 +0.8
313,766 - GFF317 0.83 -1.2
313,785 - GFF317 0.85 +0.6
313,796 - GFF317 0.86 -0.1
313,806 + GFF317 0.87 -0.1
313,806 + GFF317 0.87 -0.7
313,814 - GFF317 0.87 -0.2
313,814 - GFF317 0.87 -0.1
313,820 + GFF317 0.88 +0.8
313,828 - GFF317 0.88 +0.3
313,828 - GFF317 0.88 -0.0
313,833 - GFF317 0.89 +0.8
313,838 + GFF317 0.89 -0.2
313,848 + -0.3
313,856 - +0.0
313,856 - -2.4
313,878 + +0.2
313,881 + -1.2
313,891 + +0.3
313,891 + -0.6
313,904 - +0.0
313,912 - -0.2
313,926 - +0.6
313,931 + -0.8

Or see this region's nucleotide sequence