Strain Fitness in Sphingobium sp. HT1-2 around GFF3129

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,200,431	+				-0.1
3,200,431	+				+0.4
3,200,431	+				+0.1
3,200,439	-				-0.2
3,200,439	-				+1.3
3,200,439	-				-1.8
3,200,446	+				+0.5
3,200,548	-		GFF3128	0.16	+0.3
3,200,552	-		GFF3128	0.18	+0.4
3,200,561	+		GFF3128	0.20	-1.2
3,200,561	+		GFF3128	0.20	-2.9
3,200,574	+		GFF3128	0.25	+0.4
3,200,574	+		GFF3128	0.25	-1.1
3,200,574	+		GFF3128	0.25	-0.3
3,200,582	-		GFF3128	0.27	-0.1
3,200,607	-		GFF3128	0.35	-0.1
3,200,620	+		GFF3128	0.39	+0.9
3,200,620	+		GFF3128	0.39	-1.3
3,200,620	+		GFF3128	0.39	+0.2
3,200,628	-		GFF3128	0.42	+0.6
3,200,628	-		GFF3128	0.42	-0.1
3,200,649	-		GFF3128	0.48	-1.0
3,200,676	+		GFF3128	0.57	-1.4
3,200,676	+		GFF3128	0.57	-0.6
3,200,681	+		GFF3128	0.58	-1.5
3,200,681	+		GFF3128	0.58	-0.1
3,200,681	+		GFF3128	0.58	+1.0
3,200,681	+		GFF3128	0.58	-0.4
3,200,681	+		GFF3128	0.58	+0.0
3,200,681	+		GFF3128	0.58	-0.7
3,200,681	+		GFF3128	0.58	-1.0
3,200,684	-		GFF3128	0.59	-0.4
3,200,689	-		GFF3128	0.61	-0.9
3,200,689	-		GFF3128	0.61	-1.9
3,200,689	-		GFF3128	0.61	-1.4
3,200,689	-		GFF3128	0.61	-0.9
3,200,689	-		GFF3128	0.61	+0.1
3,200,694	+		GFF3128	0.62	+1.1
3,200,708	+		GFF3128	0.67	-0.4
3,200,708	+		GFF3128	0.67	-0.5
3,200,708	+		GFF3128	0.67	-0.8
3,200,708	+		GFF3128	0.67	-0.5
3,200,708	+		GFF3128	0.67	-0.1
3,200,708	+		GFF3128	0.67	-1.9
3,200,708	+		GFF3128	0.67	-0.8
3,200,708	+		GFF3128	0.67	+0.5
3,200,708	+		GFF3128	0.67	+1.3
3,200,716	-		GFF3128	0.69	-1.1
3,200,716	-		GFF3128	0.69	-0.4
3,200,716	-		GFF3128	0.69	+1.9
3,200,719	+		GFF3128	0.70	-0.6
3,200,727	-		GFF3128	0.73	-1.7
3,200,729	+		GFF3128	0.73	+0.9
3,200,729	+		GFF3128	0.73	+1.1
3,200,729	+		GFF3128	0.73	-0.9
3,200,737	-		GFF3128	0.76	+0.6
3,200,737	-		GFF3128	0.76	-0.4
3,200,738	-		GFF3128	0.76	-3.0
3,200,744	+		GFF3128	0.78	-0.9
3,200,744	+		GFF3128	0.78	+0.6
3,200,744	+		GFF3128	0.78	-2.2
3,200,745	-		GFF3128	0.78	-1.9
3,200,760	-		GFF3128	0.83	-0.6
3,200,776	-		GFF3128	0.88	-0.8
3,200,778	-		GFF3128	0.89	-0.1
3,200,787	+				-0.5
3,200,787	+				-0.5
3,200,787	+				+1.7
3,200,795	-				-0.0
3,200,795	-				-1.4
3,200,795	-				-0.7
3,200,795	-				-0.1
3,200,795	-				-1.2
3,200,795	-				+0.3
3,200,847	+				-0.2
3,200,855	-				-1.9
3,200,877	+				+1.9
3,200,882	+				+0.2
3,200,885	-				+0.9
3,200,885	-				-0.3
3,200,885	-				+0.2
3,200,885	-				-0.3
3,200,885	-				-1.5
3,200,885	-				-1.4
3,200,895	-				+0.6
3,200,908	+				-0.9
3,200,918	+				+0.0
3,200,926	+		GFF3129	0.10	-0.9
3,200,933	-		GFF3129	0.11	+0.8
3,200,973	+		GFF3129	0.15	+0.4
3,200,974	-		GFF3129	0.15	-1.7
3,200,981	-		GFF3129	0.16	-0.9
3,200,981	-		GFF3129	0.16	-0.2
3,200,981	-		GFF3129	0.16	+1.0
3,200,992	+		GFF3129	0.17	-1.9
3,201,000	-		GFF3129	0.17	-2.5
3,201,007	+		GFF3129	0.18	-1.1
3,201,020	-		GFF3129	0.19	-1.3
3,201,032	-		GFF3129	0.21	-0.5
3,201,045	+		GFF3129	0.22	+0.8
3,201,047	-		GFF3129	0.22	+0.5
3,201,050	+		GFF3129	0.22	-2.1
3,201,053	-		GFF3129	0.23	+0.8
3,201,054	-		GFF3129	0.23	-0.1
3,201,073	+		GFF3129	0.25	+1.0
3,201,073	+		GFF3129	0.25	-0.9
3,201,073	+		GFF3129	0.25	-1.8
3,201,073	+		GFF3129	0.25	+0.6
3,201,073	+		GFF3129	0.25	-0.7
3,201,073	+		GFF3129	0.25	-0.2
3,201,073	-		GFF3129	0.25	-0.2
3,201,073	-		GFF3129	0.25	-0.7
3,201,081	-		GFF3129	0.26	+0.0
3,201,081	-		GFF3129	0.26	+0.4
3,201,081	-		GFF3129	0.26	-0.8
3,201,081	-		GFF3129	0.26	-1.7
3,201,081	-		GFF3129	0.26	+1.2
3,201,081	-		GFF3129	0.26	-0.4
3,201,081	-		GFF3129	0.26	-2.2
3,201,081	-		GFF3129	0.26	-0.6
3,201,103	-		GFF3129	0.28	+0.2
3,201,107	-		GFF3129	0.28	-0.7
3,201,114	+		GFF3129	0.29	+1.1
3,201,122	-		GFF3129	0.30	-1.6
3,201,162	+		GFF3129	0.34	-1.3
3,201,171	+		GFF3129	0.35	-0.7
3,201,208	+		GFF3129	0.38	+0.4
3,201,247	-		GFF3129	0.42	-0.1
3,201,263	+		GFF3129	0.44	-1.0
3,201,278	+		GFF3129	0.45	-0.6
3,201,278	+		GFF3129	0.45	-2.6
3,201,361	+		GFF3129	0.54	+1.1
3,201,361	+		GFF3129	0.54	+1.0
3,201,371	+		GFF3129	0.55	+0.3
3,201,399	-		GFF3129	0.57	+0.1
3,201,419	+		GFF3129	0.59	+0.2
3,201,427	-		GFF3129	0.60	+0.1
3,201,500	+		GFF3129	0.67	-0.1
3,201,505	+		GFF3129	0.68	-0.9
3,201,507	+		GFF3129	0.68	+0.0
3,201,513	-		GFF3129	0.69	-2.1
3,201,515	+		GFF3129	0.69	+1.2
3,201,515	-		GFF3129	0.69	-1.0
3,201,523	-		GFF3129	0.70	+0.5
3,201,529	+		GFF3129	0.70	+0.2
3,201,539	-		GFF3129	0.71	-2.2
3,201,567	-		GFF3129	0.74	-0.3
3,201,567	-		GFF3129	0.74	-1.8
3,201,567	-		GFF3129	0.74	-1.1
3,201,572	-		GFF3129	0.75	+0.6
3,201,579	+		GFF3129	0.75	-0.3
3,201,582	+		GFF3129	0.76	-1.0
3,201,623	+		GFF3129	0.80	-0.2
3,201,647	+		GFF3129	0.82	-0.7
3,201,647	-		GFF3129	0.82	-0.2
3,201,647	-		GFF3129	0.82	-0.8
3,201,655	-		GFF3129	0.83	-1.5
3,201,660	-		GFF3129	0.83	-0.4
3,201,660	-		GFF3129	0.83	-0.8
3,201,662	+		GFF3129	0.84	-0.2
3,201,744	+				+1.3
3,201,748	+				-1.8
3,201,762	-				+0.6
3,201,768	+				-0.7
3,201,779	-				-2.4
3,201,785	+				-0.1
3,201,786	-				+1.8
3,201,789	+				-2.3
3,201,805	+				+0.1
3,201,805	+				-1.1
3,201,811	-				-0.4
3,201,811	-				-0.7
3,201,813	+				-0.2
3,201,813	-				+1.4
3,201,868	+				-0.3
3,201,928	+				+0.2
3,201,928	+				+0.1
3,201,936	-				-1.9
3,201,936	-				+0.4
3,201,938	+				-0.2
3,201,938	+				+0.5
3,201,946	-				-0.5
3,201,946	-				+0.2
3,201,972	+				-0.2
3,201,980	-		GFF3130	0.11	-0.1
3,202,010	-		GFF3130	0.18	+0.5
3,202,020	+		GFF3130	0.21	+1.4
3,202,028	-		GFF3130	0.22	-0.1
3,202,145	+		GFF3130	0.51	-0.7
3,202,187	+		GFF3130	0.61	-1.9
3,202,187	+		GFF3130	0.61	+0.2
3,202,187	+		GFF3130	0.61	+0.1
3,202,187	+		GFF3130	0.61	-1.5
3,202,187	+		GFF3130	0.61	+0.1
3,202,187	+		GFF3130	0.61	-0.8
3,202,195	-		GFF3130	0.63	+0.1
3,202,195	-		GFF3130	0.63	-1.6
3,202,195	-		GFF3130	0.63	-2.8
3,202,195	-		GFF3130	0.63	-0.7
3,202,195	-		GFF3130	0.63	+1.2
3,202,195	-		GFF3130	0.63	+0.0
3,202,195	-		GFF3130	0.63	+0.0
3,202,219	-		GFF3130	0.69	-1.0
3,202,219	-		GFF3130	0.69	-0.5
3,202,220	-		GFF3130	0.69	-0.6
3,202,220	-		GFF3130	0.69	+0.2
3,202,234	+		GFF3130	0.72	-2.2
3,202,235	+		GFF3130	0.72	+0.9
3,202,235	+		GFF3130	0.72	-1.0
3,202,235	+		GFF3130	0.72	+1.4
3,202,241	-		GFF3130	0.74	-1.6
3,202,242	-		GFF3130	0.74	-1.4
3,202,242	-		GFF3130	0.74	+0.2
3,202,260	-		GFF3130	0.79	-0.2
3,202,268	+		GFF3130	0.80	-0.7
3,202,301	+		GFF3130	0.88	-0.6
3,202,301	+		GFF3130	0.88	-1.3
3,202,309	-				+0.4
3,202,332	-				+0.8
3,202,345	+				-1.3
3,202,348	-				-0.1
3,202,350	+				-0.8
3,202,350	+				-0.0
3,202,350	+				-2.3
3,202,350	+				-0.8
3,202,430	-		GFF3131	0.15	+1.0
3,202,481	-		GFF3131	0.28	-2.4
3,202,492	-		GFF3131	0.31	-1.3
3,202,498	+		GFF3131	0.32	+0.4
3,202,498	+		GFF3131	0.32	-0.4
3,202,516	-		GFF3131	0.37	+1.2
3,202,518	+		GFF3131	0.38	+0.4
3,202,523	-		GFF3131	0.39	-1.8
3,202,528	-		GFF3131	0.40	-2.0
3,202,555	+		GFF3131	0.47	-0.7
3,202,557	-		GFF3131	0.48	-1.2
3,202,557	-		GFF3131	0.48	-0.5
3,202,559	+		GFF3131	0.48	+0.8
3,202,568	-		GFF3131	0.51	+1.0
3,202,583	+		GFF3131	0.54	-0.2
3,202,583	+		GFF3131	0.54	-0.6
3,202,598	-		GFF3131	0.58	-1.3
3,202,600	+		GFF3131	0.59	-0.3
3,202,608	-		GFF3131	0.61	-0.1
3,202,608	-		GFF3131	0.61	-1.0
3,202,620	+		GFF3131	0.64	-0.1
3,202,628	+		GFF3131	0.66	+0.4
3,202,628	-		GFF3131	0.66	-0.9
3,202,630	+		GFF3131	0.67	+0.1
3,202,630	+		GFF3131	0.67	+0.3
3,202,630	+		GFF3131	0.67	-0.0
3,202,635	+		GFF3131	0.68	-0.8
3,202,635	+		GFF3131	0.68	+0.0
3,202,635	+		GFF3131	0.68	-0.5
3,202,635	+		GFF3131	0.68	-1.0
3,202,635	+		GFF3131	0.68	+0.8
3,202,635	+		GFF3131	0.68	-0.1
3,202,635	+		GFF3131	0.68	-0.4
3,202,635	+		GFF3131	0.68	+0.3
3,202,636	-		GFF3131	0.68	-0.1
3,202,636	-		GFF3131	0.68	-0.3
3,202,638	-		GFF3131	0.69	+0.7
3,202,638	-		GFF3131	0.69	-2.3
3,202,643	-		GFF3131	0.70	-0.3
3,202,643	-		GFF3131	0.70	+0.2
3,202,643	-		GFF3131	0.70	-1.3
3,202,652	+		GFF3131	0.72	-0.9
3,202,664	-		GFF3131	0.76	-0.8
3,202,664	-		GFF3131	0.76	-0.3
3,202,666	+		GFF3131	0.76	-2.4
3,202,666	+		GFF3131	0.76	-1.7
3,202,666	+		GFF3131	0.76	-0.5
3,202,666	-		GFF3131	0.76	-0.7
3,202,685	+		GFF3131	0.81	+0.9
3,202,685	+		GFF3131	0.81	-0.0
3,202,685	+		GFF3131	0.81	+1.4
3,202,693	-		GFF3131	0.83	-0.0
3,202,693	-		GFF3131	0.83	-1.0
3,202,693	-		GFF3131	0.83	-0.2
3,202,695	+		GFF3131	0.84	-0.3
3,202,708	-		GFF3131	0.87	-1.8
3,202,747	+				-0.8
3,202,747	+				+0.6
3,202,755	-				+0.5
3,202,755	-				+0.2
3,202,757	+				+0.2
3,202,765	-				+0.4
3,202,779	-				+0.0
3,202,779	-				+1.4
3,202,779	-				+0.9
3,202,802	-				-0.6
3,202,811	+				+0.7
3,202,811	+				-0.2
3,202,823	+				-0.0
3,202,823	+				-0.8