Strain Fitness in Sphingobium sp. HT1-2 around GFF3056

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,130,570	-		GFF3055	0.44	-0.8
3,130,603	+		GFF3055	0.47	+0.8
3,130,618	+		GFF3055	0.48	-1.0
3,130,618	+		GFF3055	0.48	+0.4
3,130,626	-		GFF3055	0.48	+1.5
3,130,626	-		GFF3055	0.48	-0.1
3,130,626	-		GFF3055	0.48	+1.3
3,130,626	-		GFF3055	0.48	+0.4
3,130,626	-		GFF3055	0.48	+0.8
3,130,626	-		GFF3055	0.48	+0.1
3,130,629	+		GFF3055	0.48	+0.8
3,130,630	+		GFF3055	0.48	-0.5
3,130,637	-		GFF3055	0.49	-0.3
3,130,638	-		GFF3055	0.49	+1.1
3,130,640	+		GFF3055	0.49	-0.7
3,130,648	-		GFF3055	0.50	+1.0
3,130,682	-		GFF3055	0.52	-0.4
3,130,692	-		GFF3055	0.53	-0.7
3,130,705	+		GFF3055	0.54	-0.7
3,130,707	+		GFF3055	0.54	-1.3
3,130,725	-		GFF3055	0.55	-1.2
3,130,738	-		GFF3055	0.56	-0.5
3,130,744	+		GFF3055	0.57	+0.2
3,130,749	+		GFF3055	0.57	-1.7
3,130,766	+		GFF3055	0.58	-1.6
3,130,776	+		GFF3055	0.59	-0.6
3,130,776	+		GFF3055	0.59	+0.1
3,130,776	+		GFF3055	0.59	+0.2
3,130,784	-		GFF3055	0.60	-0.6
3,130,800	+		GFF3055	0.61	-1.7
3,130,801	+		GFF3055	0.61	-0.1
3,130,813	+		GFF3055	0.62	-1.2
3,130,856	+		GFF3055	0.65	-2.3
3,130,859	+		GFF3055	0.65	+0.9
3,130,861	+		GFF3055	0.65	-0.7
3,130,905	-		GFF3055	0.68	+0.4
3,130,915	+		GFF3055	0.69	-0.9
3,130,915	-		GFF3055	0.69	-0.5
3,130,915	-		GFF3055	0.69	-0.5
3,130,922	+		GFF3055	0.70	-2.5
3,130,950	+		GFF3055	0.72	-0.5
3,130,967	-		GFF3055	0.73	-0.6
3,130,968	-		GFF3055	0.73	-1.9
3,131,006	-		GFF3055	0.76	+0.7
3,131,006	-		GFF3055	0.76	+0.3
3,131,022	+		GFF3055	0.77	-0.3
3,131,046	-		GFF3055	0.78	-1.0
3,131,104	+		GFF3055	0.83	+0.3
3,131,124	+		GFF3055	0.84	-1.2
3,131,145	+		GFF3055	0.86	-0.4
3,131,157	+		GFF3055	0.87	+0.4
3,131,162	+		GFF3055	0.87	+0.1
3,131,190	+		GFF3055	0.89	-0.2
3,131,193	-		GFF3055	0.89	+0.8
3,131,200	+		GFF3055	0.90	+0.7
3,131,210	+				-0.2
3,131,229	+				-0.4
3,131,263	-				+0.4
3,131,263	-				+0.1
3,131,265	+				-0.1
3,131,273	-				-0.6
3,131,273	-				+0.2
3,131,276	+				-1.6
3,131,291	+				-2.3
3,131,334	-				-0.2
3,131,390	+				+0.3
3,131,393	-				+0.0
3,131,434	+				+0.9
3,131,436	+				-1.6
3,131,445	-				-2.5
3,131,455	-				-0.7
3,131,457	+				-0.8
3,131,469	+				-2.6
3,131,479	-				+1.1
3,131,481	+				-0.1
3,131,486	+				+0.7
3,131,530	+				-0.5
3,131,544	+				+1.4
3,131,547	-				+0.4
3,131,557	-				-1.1
3,131,565	-				+0.2
3,131,578	-				-0.5
3,131,593	-				-0.1
3,131,593	-				+0.7
3,131,593	-				+0.4
3,131,593	-				-1.2
3,131,598	+				-0.4
3,131,620	+				-1.7
3,131,620	+				-1.2
3,131,623	-				-0.5
3,131,625	+				-2.3
3,131,628	-				-1.4
3,131,628	-				-0.6
3,131,664	+		GFF3056	0.14	-0.5
3,131,670	+		GFF3056	0.15	+0.1
3,131,682	+		GFF3056	0.16	+0.2
3,131,682	+		GFF3056	0.16	-0.5
3,131,690	-		GFF3056	0.18	-1.4
3,131,718	+		GFF3056	0.22	+1.0
3,131,718	+		GFF3056	0.22	-0.7
3,131,718	+		GFF3056	0.22	+0.0
3,131,718	+		GFF3056	0.22	+0.3
3,131,738	+		GFF3056	0.24	-0.3
3,131,738	+		GFF3056	0.24	-0.5
3,131,738	+		GFF3056	0.24	-0.1
3,131,746	-		GFF3056	0.26	-0.2
3,131,781	+		GFF3056	0.31	+0.9
3,131,803	+		GFF3056	0.34	-1.3
3,131,805	+		GFF3056	0.34	+1.1
3,131,809	-		GFF3056	0.35	-2.4
3,131,813	-		GFF3056	0.35	-1.0
3,131,818	+		GFF3056	0.36	+0.7
3,131,818	+		GFF3056	0.36	-1.8
3,131,818	+		GFF3056	0.36	-0.6
3,131,826	-		GFF3056	0.37	-0.8
3,131,826	-		GFF3056	0.37	-1.7
3,131,826	-		GFF3056	0.37	-0.4
3,131,826	-		GFF3056	0.37	-2.4
3,131,901	+		GFF3056	0.48	+1.5
3,131,901	+		GFF3056	0.48	-2.4
3,131,901	+		GFF3056	0.48	-0.8
3,131,911	+		GFF3056	0.50	-0.9
3,131,944	+		GFF3056	0.54	-0.9
3,131,951	+		GFF3056	0.55	+1.2
3,131,956	+		GFF3056	0.56	+1.5
3,131,956	+		GFF3056	0.56	+0.5
3,131,956	+		GFF3056	0.56	+0.2
3,131,960	+		GFF3056	0.57	-1.7
3,131,963	-		GFF3056	0.57	+0.4
3,131,964	-		GFF3056	0.57	+0.5
3,131,964	-		GFF3056	0.57	-0.3
3,131,964	-		GFF3056	0.57	-0.4
3,131,977	-		GFF3056	0.59	+0.0
3,131,997	+		GFF3056	0.62	-0.8
3,132,005	-		GFF3056	0.63	+0.2
3,132,005	-		GFF3056	0.63	-0.3
3,132,007	-		GFF3056	0.63	-0.6
3,132,046	-		GFF3056	0.69	-0.7
3,132,068	+		GFF3056	0.72	-0.9
3,132,068	+		GFF3056	0.72	+0.7
3,132,068	+		GFF3056	0.72	+0.1
3,132,068	+		GFF3056	0.72	+1.1
3,132,068	+		GFF3056	0.72	+0.2
3,132,068	+		GFF3056	0.72	+0.4
3,132,068	+		GFF3056	0.72	+0.0
3,132,068	+		GFF3056	0.72	+0.1
3,132,068	+		GFF3056	0.72	-2.5
3,132,068	+		GFF3056	0.72	+0.3
3,132,068	+		GFF3056	0.72	+0.2
3,132,068	+		GFF3056	0.72	-0.2
3,132,076	-		GFF3056	0.73	+1.3
3,132,076	-		GFF3056	0.73	-0.1
3,132,076	-		GFF3056	0.73	+0.2
3,132,076	-		GFF3056	0.73	-1.3
3,132,076	-		GFF3056	0.73	-1.0
3,132,076	-		GFF3056	0.73	-1.5
3,132,076	-		GFF3056	0.73	+0.7
3,132,076	-		GFF3056	0.73	-1.2
3,132,076	-		GFF3056	0.73	+0.1
3,132,076	-		GFF3056	0.73	-0.7
3,132,078	+		GFF3056	0.74	+0.4
3,132,080	+		GFF3056	0.74	+0.7
3,132,088	-		GFF3056	0.75	+1.6
3,132,110	+		GFF3056	0.78	-1.7
3,132,133	+		GFF3056	0.82	-2.7
3,132,136	-		GFF3056	0.82	-1.3
3,132,138	+		GFF3056	0.82	-0.2
3,132,140	+		GFF3056	0.83	-1.2
3,132,140	+		GFF3056	0.83	-1.6
3,132,140	+		GFF3056	0.83	-0.3
3,132,140	+		GFF3056	0.83	-0.7
3,132,140	+		GFF3056	0.83	+0.8
3,132,140	+		GFF3056	0.83	+0.2
3,132,140	+		GFF3056	0.83	-0.5
3,132,140	+		GFF3056	0.83	-0.1
3,132,140	+		GFF3056	0.83	-1.4
3,132,140	+		GFF3056	0.83	+0.7
3,132,141	-		GFF3056	0.83	-1.9
3,132,145	+		GFF3056	0.83	+1.1
3,132,148	-		GFF3056	0.84	+0.2
3,132,148	-		GFF3056	0.84	-1.2
3,132,148	-		GFF3056	0.84	+0.3
3,132,150	+		GFF3056	0.84	+1.0
3,132,158	-		GFF3056	0.85	+0.1
3,132,207	-				+0.5
3,132,348	-		GFF3057	0.13	-1.6
3,132,398	+		GFF3057	0.23	+1.0
3,132,471	-		GFF3057	0.39	+1.4
3,132,483	+		GFF3057	0.41	+1.0
3,132,491	-		GFF3057	0.43	+0.7
3,132,523	-		GFF3057	0.50	+0.4
3,132,528	-		GFF3057	0.51	+2.0
3,132,556	+		GFF3057	0.57	-1.4
3,132,567	-		GFF3057	0.59	-0.3
3,132,575	+		GFF3057	0.61	+0.4
3,132,583	-		GFF3057	0.62	+1.6
3,132,593	+		GFF3057	0.64	+1.2
3,132,603	-		GFF3057	0.66	-0.6
3,132,664	+		GFF3057	0.79	+0.4
3,132,688	+		GFF3057	0.84	+0.2
3,132,696	-		GFF3057	0.86	+1.1
3,132,696	-		GFF3057	0.86	-1.2
3,132,750	+				+0.7
3,132,750	+				-0.4
3,132,750	+				+1.4
3,132,750	+				+0.4
3,132,758	-				-1.7
3,132,758	-				+0.2
3,132,758	-				-0.1
3,132,758	-				+1.6
3,132,759	-				+1.1
3,132,768	-				+0.1
3,132,772	-				+0.9
3,132,774	-				+0.1
3,132,799	+				+0.3
3,132,803	-				-1.5
3,132,804	+				-1.7
3,132,807	-				-0.6
3,132,812	+				-0.0
3,132,819	+				-0.4
3,132,821	-				-2.7
3,132,843	+				-2.8
3,132,845	+				-1.1
3,132,845	+				-1.8
3,132,847	+				-1.0
3,132,853	-				-1.5
3,132,853	-				-1.5
3,132,855	-				+0.4
3,132,855	-				-1.8
3,132,861	-				-2.5
3,132,868	+				-2.0
3,132,870	+				-3.2
3,132,881	+				-2.6
3,132,881	+				-2.5
3,132,881	+				-2.1
3,132,881	+				-1.9
3,132,889	-				-1.2
3,132,936	-		GFF3058	0.13	-1.3
3,132,936	-		GFF3058	0.13	-2.5
3,132,941	-		GFF3058	0.14	-2.4
3,132,941	-		GFF3058	0.14	-2.5
3,132,971	+		GFF3058	0.19	-0.7
3,132,972	-		GFF3058	0.19	-1.6
3,132,986	+		GFF3058	0.21	-1.5
3,133,016	+		GFF3058	0.26	-2.9
3,133,024	-		GFF3058	0.28	-2.8
3,133,039	+		GFF3058	0.30	-2.0
3,133,039	+		GFF3058	0.30	-4.0
3,133,049	+		GFF3058	0.32	-2.8
3,133,049	+		GFF3058	0.32	-1.8
3,133,057	-		GFF3058	0.33	-0.6
3,133,057	-		GFF3058	0.33	-1.8
3,133,058	-		GFF3058	0.34	-1.8
3,133,059	+		GFF3058	0.34	-2.2
3,133,063	+		GFF3058	0.34	-3.3
3,133,064	+		GFF3058	0.35	-1.7
3,133,067	-		GFF3058	0.35	-1.6
3,133,089	+		GFF3058	0.39	-2.0
3,133,092	-		GFF3058	0.39	-1.8
3,133,094	+		GFF3058	0.40	-1.6
3,133,094	+		GFF3058	0.40	-1.6
3,133,094	+		GFF3058	0.40	-1.9
3,133,094	+		GFF3058	0.40	-1.7
3,133,094	+		GFF3058	0.40	-0.8
3,133,102	-		GFF3058	0.41	-2.2
3,133,102	-		GFF3058	0.41	-1.7
3,133,102	-		GFF3058	0.41	-1.9
3,133,102	-		GFF3058	0.41	-1.1
3,133,102	-		GFF3058	0.41	-1.6
3,133,102	-		GFF3058	0.41	-2.6
3,133,102	-		GFF3058	0.41	-1.9
3,133,128	-		GFF3058	0.45	-2.6
3,133,149	+		GFF3058	0.49	-2.1
3,133,161	+		GFF3058	0.51	-0.9
3,133,169	-		GFF3058	0.52	-2.8
3,133,172	+		GFF3058	0.53	-1.8
3,133,195	+		GFF3058	0.57	-4.0
3,133,196	+		GFF3058	0.57	-2.7
3,133,196	+		GFF3058	0.57	-2.1
3,133,196	+		GFF3058	0.57	-3.0
3,133,201	+		GFF3058	0.58	-1.7
3,133,203	-		GFF3058	0.58	-1.6
3,133,204	-		GFF3058	0.58	-1.2
3,133,204	-		GFF3058	0.58	-1.6
3,133,204	-		GFF3058	0.58	-2.6
3,133,215	-		GFF3058	0.60	-1.2
3,133,217	+		GFF3058	0.61	-1.6
3,133,217	+		GFF3058	0.61	-3.6
3,133,217	+		GFF3058	0.61	-3.1
3,133,223	-		GFF3058	0.62	-2.3
3,133,225	-		GFF3058	0.62	-2.3
3,133,225	-		GFF3058	0.62	-1.2
3,133,225	-		GFF3058	0.62	-0.5
3,133,227	-		GFF3058	0.62	-2.0
3,133,227	-		GFF3058	0.62	-2.6