Strain Fitness in Sphingobium sp. HT1-2 around GFF2983

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,035,004	+		GFF2979	0.56	-0.0
3,035,005	-		GFF2979	0.56	+0.1
3,035,005	-		GFF2979	0.56	-0.0
3,035,021	+		GFF2979	0.58	+0.2
3,035,021	+		GFF2979	0.58	+0.0
3,035,026	+		GFF2979	0.59	-0.3
3,035,026	+		GFF2979	0.59	-2.9
3,035,031	+		GFF2979	0.60	-0.7
3,035,034	-		GFF2979	0.61	-0.3
3,035,054	+		GFF2979	0.64	+0.9
3,035,062	-		GFF2979	0.65	-0.7
3,035,072	+		GFF2979	0.67	+0.5
3,035,098	-		GFF2979	0.71	+0.6
3,035,099	-		GFF2979	0.72	+1.1
3,035,126	-		GFF2979	0.76	-1.3
3,035,146	+		GFF2979	0.79	-0.3
3,035,146	+		GFF2979	0.79	+0.0
3,035,146	+		GFF2979	0.79	+0.4
3,035,146	+		GFF2979	0.79	+1.1
3,035,154	-		GFF2979	0.81	-0.9
3,035,154	-		GFF2979	0.81	+0.0
3,035,187	+		GFF2979	0.86	-0.8
3,035,204	-		GFF2979	0.89	+0.2
3,035,206	+		GFF2979	0.90	+0.6
3,035,246	+				-1.6
3,035,255	+				-0.3
3,035,263	-				+0.6
3,035,263	-				-0.5
3,035,274	-				-0.9
3,035,339	-				+0.4
3,035,400	+				-1.3
3,035,444	+		GFF2980	0.32	+0.9
3,035,472	-		GFF2980	0.48	-1.2
3,035,488	-		GFF2980	0.58	-0.4
3,035,502	-		GFF2980	0.66	-0.2
3,035,541	-		GFF2980	0.89	+0.4
3,035,553	+				-0.3
3,035,626	+				+1.6
3,035,626	+				-0.6
3,035,634	-				-0.3
3,035,665	-		GFF2981	0.15	-0.9
3,035,707	-		GFF2981	0.31	-0.4
3,035,712	-		GFF2981	0.33	+0.5
3,035,833	-		GFF2981	0.79	+0.1
3,035,839	-		GFF2981	0.82	+1.0
3,035,863	+				-0.1
3,035,871	-				-1.5
3,035,871	-				+0.4
3,035,879	-				+0.4
3,035,893	-				+0.7
3,035,896	+				+0.6
3,035,896	+				+0.4
3,035,918	-		GFF2982	0.21	-1.5
3,035,923	-		GFF2982	0.27	+0.1
3,035,946	+		GFF2982	0.52	+1.1
3,035,973	+		GFF2982	0.82	-0.2
3,035,997	+				+0.9
3,036,007	+				-0.7
3,036,009	+				+1.4
3,036,086	+				+0.7
3,036,130	-				-0.4
3,036,131	-				-1.6
3,036,131	-				-0.2
3,036,152	-				-1.6
3,036,164	-				-0.3
3,036,183	+		GFF2983	0.11	-1.0
3,036,185	+		GFF2983	0.11	+0.4
3,036,186	-		GFF2983	0.11	-0.4
3,036,186	-		GFF2983	0.11	-1.3
3,036,186	-		GFF2983	0.11	-0.1
3,036,186	-		GFF2983	0.11	-0.4
3,036,186	-		GFF2983	0.11	+0.3
3,036,202	+		GFF2983	0.12	-1.7
3,036,210	-		GFF2983	0.12	+0.3
3,036,210	-		GFF2983	0.12	-1.8
3,036,216	-		GFF2983	0.13	-0.3
3,036,242	-		GFF2983	0.14	-2.2
3,036,245	+		GFF2983	0.14	+0.1
3,036,283	+		GFF2983	0.17	+1.3
3,036,283	+		GFF2983	0.17	+0.4
3,036,283	+		GFF2983	0.17	-1.0
3,036,283	+		GFF2983	0.17	-1.0
3,036,284	-		GFF2983	0.17	-0.1
3,036,289	-		GFF2983	0.17	-1.4
3,036,291	-		GFF2983	0.17	-0.3
3,036,291	-		GFF2983	0.17	-0.5
3,036,291	-		GFF2983	0.17	+1.0
3,036,317	+		GFF2983	0.19	-0.3
3,036,356	-		GFF2983	0.21	-0.3
3,036,373	-		GFF2983	0.22	-0.2
3,036,382	+		GFF2983	0.22	-0.0
3,036,383	+		GFF2983	0.22	+1.1
3,036,383	+		GFF2983	0.22	-3.2
3,036,391	-		GFF2983	0.23	-0.9
3,036,402	-		GFF2983	0.24	+0.2
3,036,405	+		GFF2983	0.24	-0.6
3,036,443	+		GFF2983	0.26	-0.4
3,036,448	+		GFF2983	0.26	-0.4
3,036,448	+		GFF2983	0.26	-0.2
3,036,448	+		GFF2983	0.26	+0.1
3,036,448	+		GFF2983	0.26	+1.2
3,036,448	+		GFF2983	0.26	-1.0
3,036,448	+		GFF2983	0.26	+0.7
3,036,451	-		GFF2983	0.26	-0.1
3,036,456	-		GFF2983	0.27	+0.3
3,036,456	-		GFF2983	0.27	+0.1
3,036,456	-		GFF2983	0.27	-1.9
3,036,456	-		GFF2983	0.27	-0.1
3,036,460	+		GFF2983	0.27	-2.4
3,036,462	-		GFF2983	0.27	+2.7
3,036,473	+		GFF2983	0.28	-0.7
3,036,483	+		GFF2983	0.28	-1.8
3,036,483	+		GFF2983	0.28	+0.2
3,036,488	+		GFF2983	0.29	-0.8
3,036,496	-		GFF2983	0.29	+0.4
3,036,496	-		GFF2983	0.29	+0.2
3,036,539	+		GFF2983	0.32	-1.1
3,036,544	-		GFF2983	0.32	+0.6
3,036,562	+		GFF2983	0.33	-0.5
3,036,563	+		GFF2983	0.33	+0.3
3,036,563	+		GFF2983	0.33	+0.1
3,036,573	+		GFF2983	0.34	-1.1
3,036,573	+		GFF2983	0.34	+0.7
3,036,590	+		GFF2983	0.35	+0.1
3,036,606	+		GFF2983	0.36	+0.5
3,036,629	+		GFF2983	0.37	+0.1
3,036,638	+		GFF2983	0.37	-0.2
3,036,646	-		GFF2983	0.38	+0.4
3,036,646	-		GFF2983	0.38	-2.1
3,036,646	-		GFF2983	0.38	+0.1
3,036,646	-		GFF2983	0.38	-0.8
3,036,646	-		GFF2983	0.38	+0.2
3,036,651	-		GFF2983	0.38	-0.9
3,036,651	-		GFF2983	0.38	-0.7
3,036,651	-		GFF2983	0.38	-0.9
3,036,657	+		GFF2983	0.38	+0.5
3,036,663	-		GFF2983	0.39	-0.3
3,036,682	-		GFF2983	0.40	-0.7
3,036,696	+		GFF2983	0.41	-1.2
3,036,704	-		GFF2983	0.41	+0.2
3,036,714	-		GFF2983	0.42	-2.1
3,036,723	+		GFF2983	0.42	+0.1
3,036,731	+		GFF2983	0.43	+0.5
3,036,762	+		GFF2983	0.45	-1.5
3,036,762	+		GFF2983	0.45	-0.5
3,036,770	-		GFF2983	0.45	-0.7
3,036,781	+		GFF2983	0.46	-1.2
3,036,800	+		GFF2983	0.47	+0.5
3,036,800	+		GFF2983	0.47	+0.4
3,036,800	+		GFF2983	0.47	+1.0
3,036,800	+		GFF2983	0.47	+0.0
3,036,800	+		GFF2983	0.47	-0.4
3,036,800	+		GFF2983	0.47	-0.8
3,036,800	+		GFF2983	0.47	-0.6
3,036,800	+		GFF2983	0.47	+1.0
3,036,800	+		GFF2983	0.47	-0.9
3,036,800	+		GFF2983	0.47	-0.8
3,036,800	+		GFF2983	0.47	+0.2
3,036,800	+		GFF2983	0.47	-0.5
3,036,800	+		GFF2983	0.47	-3.1
3,036,808	-		GFF2983	0.47	-0.4
3,036,808	-		GFF2983	0.47	+0.0
3,036,808	-		GFF2983	0.47	+0.8
3,036,808	-		GFF2983	0.47	-0.1
3,036,808	-		GFF2983	0.47	-1.0
3,036,808	-		GFF2983	0.47	+1.1
3,036,808	-		GFF2983	0.47	-0.6
3,036,808	-		GFF2983	0.47	-0.5
3,036,808	-		GFF2983	0.47	-0.0
3,036,808	-		GFF2983	0.47	+0.7
3,036,810	+		GFF2983	0.47	+0.5
3,036,810	+		GFF2983	0.47	+0.3
3,036,810	+		GFF2983	0.47	-1.4
3,036,811	+		GFF2983	0.48	+1.5
3,036,811	+		GFF2983	0.48	+0.0
3,036,811	+		GFF2983	0.48	+0.7
3,036,818	-		GFF2983	0.48	-0.9
3,036,818	-		GFF2983	0.48	-1.0
3,036,818	-		GFF2983	0.48	+0.2
3,036,818	-		GFF2983	0.48	+0.9
3,036,818	-		GFF2983	0.48	+1.6
3,036,819	-		GFF2983	0.48	+0.7
3,036,827	+		GFF2983	0.48	-1.4
3,036,837	-		GFF2983	0.49	-0.1
3,036,844	+		GFF2983	0.49	-1.3
3,036,849	+		GFF2983	0.50	-0.1
3,036,849	+		GFF2983	0.50	-0.9
3,036,849	+		GFF2983	0.50	-0.7
3,036,849	+		GFF2983	0.50	-0.1
3,036,849	+		GFF2983	0.50	-2.1
3,036,857	-		GFF2983	0.50	+0.8
3,036,857	-		GFF2983	0.50	+0.5
3,036,857	-		GFF2983	0.50	-1.4
3,036,911	+		GFF2983	0.53	+1.1
3,036,919	-		GFF2983	0.54	-0.5
3,036,929	+		GFF2983	0.54	-1.7
3,036,937	-		GFF2983	0.55	-2.0
3,036,972	+		GFF2983	0.57	-0.5
3,036,972	+		GFF2983	0.57	+1.1
3,036,980	-		GFF2983	0.57	+0.2
3,036,980	-		GFF2983	0.57	-0.7
3,036,980	-		GFF2983	0.57	+0.2
3,036,980	-		GFF2983	0.57	-0.3
3,036,980	-		GFF2983	0.57	+1.5
3,037,001	+		GFF2983	0.59	-0.8
3,037,001	+		GFF2983	0.59	-1.5
3,037,011	+		GFF2983	0.59	-1.9
3,037,011	+		GFF2983	0.59	-0.3
3,037,011	+		GFF2983	0.59	+0.9
3,037,011	+		GFF2983	0.59	+2.4
3,037,011	+		GFF2983	0.59	-0.8
3,037,011	+		GFF2983	0.59	-1.9
3,037,011	+		GFF2983	0.59	-0.1
3,037,011	+		GFF2983	0.59	-1.5
3,037,019	-		GFF2983	0.60	+0.7
3,037,019	-		GFF2983	0.60	-0.4
3,037,019	-		GFF2983	0.60	+0.9
3,037,019	-		GFF2983	0.60	+1.1
3,037,019	-		GFF2983	0.60	+0.2
3,037,019	-		GFF2983	0.60	+1.3
3,037,019	-		GFF2983	0.60	-1.5
3,037,019	-		GFF2983	0.60	+0.4
3,037,019	-		GFF2983	0.60	+1.4
3,037,057	+		GFF2983	0.62	-0.5
3,037,057	+		GFF2983	0.62	-0.3
3,037,065	+		GFF2983	0.62	+1.1
3,037,065	-		GFF2983	0.62	-0.5
3,037,070	+		GFF2983	0.63	+0.1
3,037,073	-		GFF2983	0.63	-0.2
3,037,083	-		GFF2983	0.63	-0.4
3,037,085	+		GFF2983	0.64	+0.8
3,037,106	-		GFF2983	0.65	-0.1
3,037,123	+		GFF2983	0.66	-0.8
3,037,128	-		GFF2983	0.66	-0.4
3,037,146	+		GFF2983	0.67	-1.0
3,037,154	-		GFF2983	0.68	+0.5
3,037,155	-		GFF2983	0.68	+0.3
3,037,192	+		GFF2983	0.70	-0.2
3,037,219	-		GFF2983	0.71	+0.1
3,037,223	-		GFF2983	0.72	+0.4
3,037,225	+		GFF2983	0.72	-0.4
3,037,249	+		GFF2983	0.73	+1.7
3,037,255	-		GFF2983	0.74	-2.0
3,037,261	+		GFF2983	0.74	+0.9
3,037,268	+		GFF2983	0.74	+0.6
3,037,291	+		GFF2983	0.76	-1.2
3,037,299	-		GFF2983	0.76	+1.0
3,037,330	+		GFF2983	0.78	-1.7
3,037,333	-		GFF2983	0.78	+0.4
3,037,338	-		GFF2983	0.78	+0.0
3,037,347	+		GFF2983	0.79	-0.5
3,037,349	+		GFF2983	0.79	-1.4
3,037,355	-		GFF2983	0.79	+0.4
3,037,372	-		GFF2983	0.80	-1.9
3,037,377	+		GFF2983	0.81	-0.1
3,037,386	-		GFF2983	0.81	-0.2
3,037,392	-		GFF2983	0.82	+0.9
3,037,392	-		GFF2983	0.82	-0.4
3,037,392	-		GFF2983	0.82	+0.5
3,037,399	+		GFF2983	0.82	+0.6
3,037,411	+		GFF2983	0.83	+0.9
3,037,474	+		GFF2983	0.86	-1.0
3,037,566	+				-0.4
3,037,569	+				+1.6
3,037,584	+				-0.5
3,037,584	+				+0.4
3,037,585	+				-0.9
3,037,585	+				+0.4
3,037,585	+				+0.1
3,037,585	+				-2.2
3,037,585	+				-0.1
3,037,585	-				+0.5
3,037,592	-				+1.4
3,037,594	+				+0.3
3,037,602	+				-0.4
3,037,607	+				+1.3
3,037,617	+				-1.0
3,037,617	+				-1.7
3,037,617	+				-0.0
3,037,625	-				-0.2
3,037,636	+				+1.3
3,037,641	+				-0.7
3,037,646	+				+0.1
3,037,649	-				+0.3
3,037,652	+				+1.0
3,037,652	+				+0.1
3,037,660	-				+0.3
3,037,660	-				-0.5
3,037,660	-				-0.6
3,037,685	+				+0.6
3,037,728	-				-0.2
3,037,735	-				-0.2
3,037,763	-				+0.1
3,037,773	+				+1.0
3,037,824	-				+0.2
3,037,829	+				-0.9
3,037,856	+				-0.4
3,037,856	+				+0.3
3,037,871	-				-0.3
3,037,872	-				+1.7
3,037,888	+				-0.2
3,037,896	-				-1.5
3,037,901	-				+0.1
3,037,901	-				+0.4
3,037,916	+				+0.8
3,037,918	-				+0.2
3,037,929	+		GFF2984	0.10	-0.0
3,037,950	-		GFF2984	0.11	+1.3
3,037,953	+		GFF2984	0.12	+0.3
3,037,995	+		GFF2984	0.14	-0.1
3,038,024	+		GFF2984	0.15	+0.8
3,038,054	-		GFF2984	0.16	+0.2
3,038,105	+		GFF2984	0.19	+0.5
3,038,110	+		GFF2984	0.19	+2.0
3,038,115	+		GFF2984	0.19	+0.8
3,038,115	+		GFF2984	0.19	-0.8
3,038,115	+		GFF2984	0.19	-1.2
3,038,123	-		GFF2984	0.20	+2.4
3,038,123	-		GFF2984	0.20	+0.4
3,038,123	-		GFF2984	0.20	-0.6
3,038,137	-		GFF2984	0.20	+0.1
3,038,232	+		GFF2984	0.25	-1.5
3,038,305	-		GFF2984	0.29	-1.4
3,038,315	-		GFF2984	0.29	-0.1
3,038,324	+		GFF2984	0.30	-0.8
3,038,334	+		GFF2984	0.30	-0.3
3,038,334	+		GFF2984	0.30	-1.1
3,038,334	+		GFF2984	0.30	+2.2
3,038,334	+		GFF2984	0.30	+0.8
3,038,334	+		GFF2984	0.30	-0.3
3,038,334	+		GFF2984	0.30	-0.6
3,038,334	+		GFF2984	0.30	-0.2
3,038,334	+		GFF2984	0.30	+0.0
3,038,334	+		GFF2984	0.30	-0.8
3,038,334	+		GFF2984	0.30	+0.1
3,038,334	+		GFF2984	0.30	+0.4
3,038,339	+		GFF2984	0.30	-0.7
3,038,342	+		GFF2984	0.31	-0.8
3,038,342	-		GFF2984	0.31	-0.0
3,038,342	-		GFF2984	0.31	-0.0
3,038,342	-		GFF2984	0.31	+0.1
3,038,342	-		GFF2984	0.31	+1.7
3,038,342	-		GFF2984	0.31	-0.7
3,038,342	-		GFF2984	0.31	-1.4
3,038,350	-		GFF2984	0.31	+0.2
3,038,375	+		GFF2984	0.32	+0.1
3,038,375	+		GFF2984	0.32	-1.9
3,038,375	+		GFF2984	0.32	+0.8
3,038,375	+		GFF2984	0.32	+0.9
3,038,379	+		GFF2984	0.32	+1.0
3,038,381	+		GFF2984	0.32	-0.3
3,038,381	+		GFF2984	0.32	+1.0
3,038,382	-		GFF2984	0.32	+0.6
3,038,383	-		GFF2984	0.33	-0.8
3,038,383	-		GFF2984	0.33	-0.0
3,038,393	-		GFF2984	0.33	+1.7
3,038,409	-		GFF2984	0.34	+1.6
3,038,439	-		GFF2984	0.35	-0.3
3,038,490	+		GFF2984	0.38	-1.9
3,038,496	-		GFF2984	0.38	-1.5
3,038,498	+		GFF2984	0.38	-0.7
3,038,498	+		GFF2984	0.38	+0.5
3,038,498	+		GFF2984	0.38	-1.4
3,038,502	+		GFF2984	0.38	-0.6
3,038,505	-		GFF2984	0.38	+1.5
3,038,506	-		GFF2984	0.39	+0.3
3,038,506	-		GFF2984	0.39	+0.8
3,038,506	-		GFF2984	0.39	+0.9
3,038,506	-		GFF2984	0.39	+0.2
3,038,567	+		GFF2984	0.41	-1.0
3,038,575	+		GFF2984	0.42	+0.8
3,038,634	+		GFF2984	0.45	-0.4
3,038,642	-		GFF2984	0.45	-0.2
3,038,656	-		GFF2984	0.46	+0.7
3,038,660	-		GFF2984	0.46	+0.6
3,038,667	-		GFF2984	0.46	+0.0