Strain Fitness in Sphingobium sp. HT1-2 around GFF2944

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,011,884	+				+0.4
3,011,994	+				-1.0
3,012,002	-				+0.9
3,012,007	-				-0.6
3,012,057	+				+0.5
3,012,093	+				+1.0
3,012,164	-				+1.2
3,012,194	+				-0.6
3,012,261	+		GFF2943	0.13	-0.0
3,012,264	-		GFF2943	0.14	+1.1
3,012,270	-		GFF2943	0.15	+0.6
3,012,270	-		GFF2943	0.15	-2.0
3,012,280	-		GFF2943	0.16	-1.9
3,012,299	+		GFF2943	0.19	-0.1
3,012,306	-		GFF2943	0.20	+0.8
3,012,311	-		GFF2943	0.20	-2.7
3,012,311	-		GFF2943	0.20	+1.2
3,012,325	+		GFF2943	0.22	-0.5
3,012,333	-		GFF2943	0.23	+0.5
3,012,333	-		GFF2943	0.23	+1.2
3,012,333	-		GFF2943	0.23	+0.9
3,012,347	+		GFF2943	0.25	+1.2
3,012,355	-		GFF2943	0.26	-1.2
3,012,355	-		GFF2943	0.26	+0.5
3,012,384	+		GFF2943	0.31	+0.4
3,012,384	+		GFF2943	0.31	-0.8
3,012,392	-		GFF2943	0.32	-1.0
3,012,392	-		GFF2943	0.32	+0.5
3,012,433	+		GFF2943	0.37	-1.2
3,012,433	+		GFF2943	0.37	+1.4
3,012,443	+		GFF2943	0.39	-2.2
3,012,448	-		GFF2943	0.39	+0.3
3,012,450	+		GFF2943	0.40	-0.7
3,012,455	+		GFF2943	0.40	+0.1
3,012,463	-		GFF2943	0.42	+1.6
3,012,463	-		GFF2943	0.42	-1.3
3,012,469	+		GFF2943	0.42	-0.1
3,012,477	-		GFF2943	0.44	-0.4
3,012,477	-		GFF2943	0.44	+0.0
3,012,477	-		GFF2943	0.44	-1.4
3,012,477	-		GFF2943	0.44	+1.0
3,012,477	-		GFF2943	0.44	+1.3
3,012,477	-		GFF2943	0.44	+1.4
3,012,482	-		GFF2943	0.44	-0.4
3,012,511	-		GFF2943	0.48	+0.4
3,012,511	-		GFF2943	0.48	+0.0
3,012,512	-		GFF2943	0.48	+0.7
3,012,551	+		GFF2943	0.54	-3.4
3,012,554	-		GFF2943	0.54	-0.2
3,012,596	+		GFF2943	0.60	+1.4
3,012,596	+		GFF2943	0.60	-2.2
3,012,604	-		GFF2943	0.61	-0.1
3,012,604	-		GFF2943	0.61	+1.7
3,012,604	-		GFF2943	0.61	-0.0
3,012,604	-		GFF2943	0.61	+0.7
3,012,606	-		GFF2943	0.62	-1.4
3,012,635	+		GFF2943	0.66	-1.3
3,012,645	-		GFF2943	0.67	-0.1
3,012,661	-		GFF2943	0.69	+0.6
3,012,679	-		GFF2943	0.72	+0.7
3,012,683	-		GFF2943	0.72	-0.2
3,012,689	-		GFF2943	0.73	+0.4
3,012,689	-		GFF2943	0.73	-2.0
3,012,700	+		GFF2943	0.75	+0.1
3,012,730	+		GFF2943	0.79	+1.6
3,012,730	+		GFF2943	0.79	+1.2
3,012,730	+		GFF2943	0.79	-0.6
3,012,730	+		GFF2943	0.79	-0.8
3,012,730	+		GFF2943	0.79	+2.4
3,012,734	-		GFF2943	0.79	+0.3
3,012,736	-		GFF2943	0.80	-0.9
3,012,738	-		GFF2943	0.80	-0.2
3,012,738	-		GFF2943	0.80	+0.8
3,012,738	-		GFF2943	0.80	-0.4
3,012,738	-		GFF2943	0.80	-1.1
3,012,738	-		GFF2943	0.80	-0.1
3,012,738	-		GFF2943	0.80	-0.9
3,012,738	-		GFF2943	0.80	-0.8
3,012,738	-		GFF2943	0.80	-0.3
3,012,743	-		GFF2943	0.81	-1.3
3,012,745	+		GFF2943	0.81	+0.3
3,012,745	+		GFF2943	0.81	+0.4
3,012,757	+		GFF2943	0.83	-0.2
3,012,763	-		GFF2943	0.83	+0.2
3,012,763	-		GFF2943	0.83	-0.1
3,012,763	-		GFF2943	0.83	-0.6
3,012,765	-		GFF2943	0.84	-0.4
3,012,804	-		GFF2943	0.89	+0.7
3,012,813	-				-1.4
3,012,848	-				+0.8
3,012,866	+				-0.3
3,012,894	+				+1.3
3,012,899	+				-0.5
3,012,902	-		GFF2944	0.12	+0.2
3,012,939	-		GFF2944	0.35	-0.4
3,012,966	+		GFF2944	0.53	+0.1
3,012,967	+		GFF2944	0.53	-0.6
3,012,969	-		GFF2944	0.54	-1.7
3,012,982	+		GFF2944	0.63	+1.8
3,012,990	-		GFF2944	0.68	-1.9
3,013,000	-		GFF2944	0.74	-1.3
3,013,015	-		GFF2944	0.84	-0.7
3,013,051	+				-0.3
3,013,059	-				-0.3
3,013,066	+				+0.3
3,013,066	+				-0.3
3,013,080	+				+0.7
3,013,101	+				-1.3
3,013,101	+				+0.4
3,013,106	+				+0.1
3,013,111	+				+1.4
3,013,111	+				-2.1
3,013,140	+		GFF2945	0.16	+0.3
3,013,140	+		GFF2945	0.16	-0.5
3,013,140	+		GFF2945	0.16	-1.0
3,013,140	+		GFF2945	0.16	+1.1
3,013,146	-		GFF2945	0.17	-0.1
3,013,148	-		GFF2945	0.18	+0.4
3,013,150	+		GFF2945	0.18	+0.1
3,013,181	+		GFF2945	0.25	+0.1
3,013,181	+		GFF2945	0.25	-0.8
3,013,181	+		GFF2945	0.25	+1.0
3,013,189	-		GFF2945	0.27	+1.2
3,013,189	-		GFF2945	0.27	+0.4
3,013,221	+		GFF2945	0.35	+1.3
3,013,238	+		GFF2945	0.39	+1.2
3,013,248	-		GFF2945	0.41	+0.4
3,013,350	+		GFF2945	0.65	+0.9
3,013,365	+		GFF2945	0.69	+1.6
3,013,403	-		GFF2945	0.77	+0.7
3,013,403	-		GFF2945	0.77	-1.1
3,013,413	+		GFF2945	0.80	-1.0
3,013,415	+		GFF2945	0.80	+0.8
3,013,453	-		GFF2945	0.89	+0.5
3,013,460	-				-0.4
3,013,460	-				-0.0
3,013,549	-		GFF2946	0.66	-0.3
3,013,549	-		GFF2946	0.66	-1.0
3,013,549	-		GFF2946	0.66	+1.4
3,013,568	+		GFF2946	0.86	+1.0
3,013,575	+				+1.2
3,013,575	+				-0.9
3,013,583	-				-0.1
3,013,583	-				-0.2
3,013,596	+				+1.0
3,013,619	+		GFF2947	0.19	+0.5
3,013,619	+		GFF2947	0.19	-0.5
3,013,625	-		GFF2947	0.22	-0.0
3,013,627	+		GFF2947	0.23	-1.5
3,013,635	-		GFF2947	0.27	+0.1
3,013,642	-		GFF2947	0.30	-2.6
3,013,642	-		GFF2947	0.30	+2.4
3,013,657	-		GFF2947	0.37	+1.4
3,013,687	-		GFF2947	0.51	-1.4
3,013,695	-		GFF2947	0.55	-0.2
3,013,695	-		GFF2947	0.55	+0.5
3,013,705	-		GFF2947	0.59	+0.5
3,013,717	+		GFF2947	0.65	-1.2
3,013,795	-				+0.7
3,013,798	-				+0.6
3,013,811	+				-0.1
3,013,819	-				-0.2
3,013,854	+				+1.5
3,013,862	-				-1.2
3,013,862	-				+0.8
3,013,887	+				+0.2
3,013,916	+				+0.8
3,013,916	+				-1.7
3,013,922	+				-0.1
3,013,922	+				+0.7
3,013,922	+				+0.9
3,013,922	+				-1.5
3,013,922	+				+0.2
3,013,922	+				+0.6
3,013,922	+				-0.2
3,013,922	+				+0.6
3,013,922	+				-1.1
3,013,922	+				+0.0
3,013,922	+				+0.3
3,013,922	+				-1.8
3,013,922	+				-0.4
3,013,922	+				-0.0
3,013,922	+				-0.8
3,013,922	+				-0.1
3,013,922	+				-0.3
3,013,924	-				+0.6
3,013,924	-				-0.8
3,013,930	-				-1.1
3,013,930	-				+0.9
3,013,930	-				-1.7
3,013,930	-				+1.0
3,013,930	-				+1.1
3,013,930	-				+0.5
3,013,930	-				-1.1
3,013,930	-				+0.5
3,013,930	-				-0.1
3,013,930	-				+0.6
3,013,930	-				+0.0
3,013,930	-				+1.0
3,013,930	-				+0.9
3,013,930	-				-0.4
3,013,942	-				+1.7
3,013,957	+				-0.5
3,013,961	-				+0.8
3,013,989	-		GFF2948	0.10	-1.3
3,014,025	+		GFF2948	0.12	-0.9
3,014,033	-		GFF2948	0.12	+0.1
3,014,039	+		GFF2948	0.13	-0.2
3,014,039	+		GFF2948	0.13	+0.2
3,014,039	+		GFF2948	0.13	+0.8
3,014,039	+		GFF2948	0.13	+0.1