Strain Fitness in Sphingobium sp. HT1-2 around GFF2929

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,000,999	+		GFF2927	0.49	-2.3
3,000,999	+		GFF2927	0.49	+0.0
3,000,999	+		GFF2927	0.49	-0.1
3,000,999	+		GFF2927	0.49	-0.7
3,000,999	+		GFF2927	0.49	+0.1
3,001,002	-		GFF2927	0.50	-1.4
3,001,002	-		GFF2927	0.50	-0.5
3,001,002	-		GFF2927	0.50	+0.4
3,001,002	-		GFF2927	0.50	-0.7
3,001,007	-		GFF2927	0.51	+0.1
3,001,007	-		GFF2927	0.51	-2.4
3,001,007	-		GFF2927	0.51	-0.9
3,001,007	-		GFF2927	0.51	+0.7
3,001,007	-		GFF2927	0.51	+0.8
3,001,007	-		GFF2927	0.51	-0.4
3,001,007	-		GFF2927	0.51	-0.2
3,001,010	+		GFF2927	0.51	-1.9
3,001,012	-		GFF2927	0.51	-0.3
3,001,014	+		GFF2927	0.52	-0.2
3,001,014	+		GFF2927	0.52	+0.4
3,001,022	-		GFF2927	0.53	-1.7
3,001,022	-		GFF2927	0.53	-0.3
3,001,082	+		GFF2927	0.62	-2.1
3,001,082	+		GFF2927	0.62	-0.1
3,001,108	+		GFF2927	0.66	+0.9
3,001,116	-		GFF2927	0.68	-1.0
3,001,116	-		GFF2927	0.68	+0.3
3,001,116	-		GFF2927	0.68	+0.3
3,001,116	-		GFF2927	0.68	-1.8
3,001,116	-		GFF2927	0.68	-0.5
3,001,117	-		GFF2927	0.68	-2.1
3,001,118	+		GFF2927	0.68	+0.6
3,001,119	+		GFF2927	0.68	+0.7
3,001,119	+		GFF2927	0.68	-1.4
3,001,129	+		GFF2927	0.70	-0.1
3,001,129	+		GFF2927	0.70	-1.7
3,001,129	+		GFF2927	0.70	-0.4
3,001,129	+		GFF2927	0.70	+0.7
3,001,129	+		GFF2927	0.70	-0.8
3,001,129	+		GFF2927	0.70	-0.9
3,001,129	+		GFF2927	0.70	+0.5
3,001,129	+		GFF2927	0.70	-0.3
3,001,129	+		GFF2927	0.70	-1.3
3,001,129	+		GFF2927	0.70	-0.2
3,001,129	+		GFF2927	0.70	-0.7
3,001,132	-		GFF2927	0.70	-0.7
3,001,137	-		GFF2927	0.71	-2.0
3,001,137	-		GFF2927	0.71	+0.3
3,001,137	-		GFF2927	0.71	-0.6
3,001,172	+		GFF2927	0.76	+0.6
3,001,206	-		GFF2927	0.82	-0.3
3,001,244	+		GFF2927	0.88	+0.0
3,001,244	+		GFF2927	0.88	+0.9
3,001,246	+		GFF2927	0.88	-0.8
3,001,259	+				+0.0
3,001,262	+				+1.0
3,001,265	-				-0.9
3,001,267	-				-0.6
3,001,280	-				+0.5
3,001,348	+				+0.8
3,001,409	-				-0.8
3,001,449	+				-0.7
3,001,459	-				+1.6
3,001,487	-				+0.7
3,001,506	+				+0.4
3,001,506	+				+0.3
3,001,545	+		GFF2928	0.12	+0.7
3,001,545	+		GFF2928	0.12	+0.3
3,001,553	-		GFF2928	0.14	-0.0
3,001,553	-		GFF2928	0.14	-0.4
3,001,553	-		GFF2928	0.14	-0.7
3,001,580	+		GFF2928	0.20	+0.0
3,001,580	+		GFF2928	0.20	+0.1
3,001,580	+		GFF2928	0.20	-1.5
3,001,583	-		GFF2928	0.21	+2.1
3,001,588	-		GFF2928	0.22	+0.2
3,001,588	-		GFF2928	0.22	+0.3
3,001,588	-		GFF2928	0.22	+0.7
3,001,588	-		GFF2928	0.22	-0.8
3,001,592	+		GFF2928	0.23	-1.0
3,001,600	-		GFF2928	0.25	-0.9
3,001,607	+		GFF2928	0.26	-2.9
3,001,607	+		GFF2928	0.26	-0.6
3,001,607	+		GFF2928	0.26	-2.8
3,001,612	+		GFF2928	0.27	+1.2
3,001,615	-		GFF2928	0.28	-0.0
3,001,620	-		GFF2928	0.29	-2.4
3,001,625	+		GFF2928	0.30	+0.9
3,001,633	-		GFF2928	0.32	-1.4
3,001,638	-		GFF2928	0.33	+0.3
3,001,649	+		GFF2928	0.36	-1.5
3,001,652	-		GFF2928	0.37	+0.8
3,001,662	-		GFF2928	0.39	-1.4
3,001,673	-		GFF2928	0.41	+0.9
3,001,683	+		GFF2928	0.44	-0.8
3,001,712	-		GFF2928	0.50	+0.0
3,001,740	-		GFF2928	0.57	+0.6
3,001,764	+		GFF2928	0.62	+1.2
3,001,764	+		GFF2928	0.62	-0.9
3,001,772	-		GFF2928	0.64	+0.3
3,001,772	-		GFF2928	0.64	-1.2
3,001,785	-		GFF2928	0.67	+0.1
3,001,798	+		GFF2928	0.70	+0.3
3,001,798	+		GFF2928	0.70	-1.6
3,001,806	-		GFF2928	0.72	-0.1
3,001,806	-		GFF2928	0.72	+1.6
3,001,806	-		GFF2928	0.72	-1.8
3,001,806	-		GFF2928	0.72	+1.3
3,001,814	+		GFF2928	0.74	+0.2
3,001,822	+		GFF2928	0.76	-1.2
3,001,822	-		GFF2928	0.76	-1.8
3,001,822	-		GFF2928	0.76	-0.2
3,001,840	+		GFF2928	0.80	-0.3
3,001,848	-		GFF2928	0.82	-2.1
3,001,854	+		GFF2928	0.83	-0.3
3,001,867	-		GFF2928	0.86	+1.4
3,001,867	-		GFF2928	0.86	+0.2
3,001,881	+		GFF2928	0.89	+0.4
3,001,886	+				-1.0
3,001,886	+				+0.1
3,001,891	+				-1.3
3,001,892	-				-1.6
3,001,894	-				+0.7
3,001,899	-				+0.4
3,001,899	-				+1.4
3,001,928	+				-0.3
3,001,928	+				-0.3
3,001,928	+				-0.3
3,001,936	-				-1.6
3,001,936	-				+0.4
3,001,936	-				+1.2
3,001,936	-				-0.9
3,001,995	+				+1.0
3,001,995	+				-0.8
3,002,019	+				+0.8
3,002,025	+				-1.7
3,002,025	+				+0.7
3,002,028	-				-0.1
3,002,045	+				+0.6
3,002,045	+				-2.5
3,002,045	+				+1.1
3,002,045	+				-0.9
3,002,045	+				-1.9
3,002,045	+				-0.4
3,002,045	+				-1.0
3,002,045	+				+0.3
3,002,045	+				+0.6
3,002,053	-				-0.6
3,002,053	-				-0.6
3,002,053	-				-1.2
3,002,053	-				-1.1
3,002,053	-				-1.3
3,002,068	-				-0.4
3,002,136	+		GFF2929	0.15	+0.5
3,002,136	+		GFF2929	0.15	+0.5
3,002,138	+		GFF2929	0.15	-0.6
3,002,142	-		GFF2929	0.16	-1.5
3,002,148	+		GFF2929	0.17	+0.3
3,002,155	+		GFF2929	0.17	-2.1
3,002,160	+		GFF2929	0.18	-1.9
3,002,160	+		GFF2929	0.18	-1.0
3,002,160	+		GFF2929	0.18	-0.2
3,002,160	+		GFF2929	0.18	-0.6
3,002,160	+		GFF2929	0.18	-0.5
3,002,165	+		GFF2929	0.18	-0.7
3,002,165	+		GFF2929	0.18	-0.5
3,002,168	-		GFF2929	0.19	+0.9
3,002,168	-		GFF2929	0.19	+0.9
3,002,168	-		GFF2929	0.19	-1.2
3,002,168	-		GFF2929	0.19	-1.4
3,002,168	-		GFF2929	0.19	+0.1
3,002,168	-		GFF2929	0.19	-0.0
3,002,168	-		GFF2929	0.19	+1.1
3,002,168	-		GFF2929	0.19	+0.8
3,002,168	-		GFF2929	0.19	+0.3
3,002,168	-		GFF2929	0.19	+0.8
3,002,168	-		GFF2929	0.19	+0.4
3,002,170	+		GFF2929	0.19	-0.5
3,002,173	-		GFF2929	0.19	-2.2
3,002,183	+		GFF2929	0.20	+0.5
3,002,190	+		GFF2929	0.21	-1.2
3,002,231	+		GFF2929	0.26	+0.4
3,002,231	+		GFF2929	0.26	-1.6
3,002,231	+		GFF2929	0.26	-0.3
3,002,231	+		GFF2929	0.26	-2.8
3,002,231	+		GFF2929	0.26	-0.1
3,002,231	+		GFF2929	0.26	-0.4
3,002,231	+		GFF2929	0.26	-1.2
3,002,231	+		GFF2929	0.26	-1.0
3,002,231	+		GFF2929	0.26	-1.5
3,002,231	+		GFF2929	0.26	+0.1
3,002,236	+		GFF2929	0.26	+0.4
3,002,239	-		GFF2929	0.26	+0.1
3,002,239	-		GFF2929	0.26	+0.2
3,002,239	-		GFF2929	0.26	-1.3
3,002,239	-		GFF2929	0.26	-0.4
3,002,240	+		GFF2929	0.27	+1.3
3,002,240	+		GFF2929	0.27	+0.6
3,002,240	+		GFF2929	0.27	-0.3
3,002,248	-		GFF2929	0.27	+0.2
3,002,263	+		GFF2929	0.29	-0.8
3,002,268	+		GFF2929	0.30	+0.5
3,002,271	-		GFF2929	0.30	-0.9
3,002,276	-		GFF2929	0.30	-1.1
3,002,298	-		GFF2929	0.33	+0.6
3,002,299	+		GFF2929	0.33	-0.5
3,002,299	+		GFF2929	0.33	-0.3
3,002,331	+		GFF2929	0.37	+1.4
3,002,331	+		GFF2929	0.37	-1.1
3,002,331	+		GFF2929	0.37	-1.5
3,002,339	-		GFF2929	0.37	-0.7
3,002,339	-		GFF2929	0.37	+0.2
3,002,339	-		GFF2929	0.37	-2.6
3,002,346	+		GFF2929	0.38	-0.8
3,002,354	-		GFF2929	0.39	+1.1
3,002,354	-		GFF2929	0.39	-0.2
3,002,370	+		GFF2929	0.41	-0.3
3,002,400	+		GFF2929	0.44	+1.0
3,002,400	+		GFF2929	0.44	+1.0
3,002,416	-		GFF2929	0.46	-0.9
3,002,426	+		GFF2929	0.47	+1.2
3,002,434	+		GFF2929	0.48	+0.8
3,002,442	-		GFF2929	0.49	+0.4
3,002,454	+		GFF2929	0.50	+0.8
3,002,454	+		GFF2929	0.50	-0.5
3,002,466	+		GFF2929	0.51	+0.4
3,002,471	+		GFF2929	0.52	-0.0
3,002,472	+		GFF2929	0.52	+0.7
3,002,481	+		GFF2929	0.53	+0.1
3,002,481	+		GFF2929	0.53	-0.8
3,002,481	+		GFF2929	0.53	-0.0
3,002,481	+		GFF2929	0.53	-1.2
3,002,481	+		GFF2929	0.53	-0.2
3,002,482	-		GFF2929	0.53	-1.6
3,002,491	+		GFF2929	0.54	-1.2
3,002,491	-		GFF2929	0.54	-1.2
3,002,516	+		GFF2929	0.57	+0.4
3,002,629	+		GFF2929	0.69	-1.2
3,002,632	+		GFF2929	0.69	-0.2
3,002,639	+		GFF2929	0.70	+0.4
3,002,639	+		GFF2929	0.70	+0.2
3,002,639	+		GFF2929	0.70	-0.7
3,002,639	+		GFF2929	0.70	-1.3
3,002,647	-		GFF2929	0.71	-1.2
3,002,647	-		GFF2929	0.71	+0.6
3,002,658	-		GFF2929	0.72	-2.1
3,002,672	-		GFF2929	0.74	-1.3
3,002,682	-		GFF2929	0.75	+1.9
3,002,682	-		GFF2929	0.75	+0.6
3,002,731	-		GFF2929	0.80	+0.5
3,002,731	-		GFF2929	0.80	+1.0
3,002,733	+		GFF2929	0.80	-0.1
3,002,748	-		GFF2929	0.82	-0.3
3,002,771	+		GFF2929	0.85	-0.3
3,002,784	-		GFF2929	0.86	-0.5
3,002,813	-		GFF2929	0.89	+0.4
3,002,831	-				-1.9
3,002,877	-				-0.3
3,002,887	-				+0.8
3,002,900	-				+0.2
3,002,920	+				+0.1
3,002,992	-				+2.4
3,002,992	-				-1.3
3,002,995	-				-0.1
3,003,028	+				+0.1
3,003,028	+				-1.3
3,003,028	+				-0.3
3,003,028	+				+0.3
3,003,028	+				-1.0
3,003,028	+				-0.3
3,003,028	+				-1.5
3,003,028	+				-1.4
3,003,028	+				+0.7
3,003,036	-				-0.3
3,003,036	-				+0.3
3,003,036	-				-1.0
3,003,036	-				+0.2
3,003,036	-				+0.4
3,003,036	-				+0.7
3,003,036	-				-0.4
3,003,036	-				+0.3
3,003,069	+				-0.3
3,003,077	-				+0.0
3,003,117	-				+0.6
3,003,165	-				-1.6
3,003,172	+				+0.1
3,003,172	+				-0.6
3,003,172	+				-1.6
3,003,172	+				+0.7
3,003,182	+				+0.9
3,003,182	+				+0.8
3,003,190	-				-0.2
3,003,190	-				-0.0
3,003,190	-				-0.8
3,003,190	-				+0.9
3,003,190	-				+0.3
3,003,238	+				+0.7
3,003,243	+				-0.7
3,003,251	-		GFF2930	0.10	-0.5
3,003,251	-		GFF2930	0.10	-2.9
3,003,256	-		GFF2930	0.11	-1.1
3,003,256	-		GFF2930	0.11	+0.1
3,003,256	-		GFF2930	0.11	-0.4
3,003,256	-		GFF2930	0.11	+0.4
3,003,283	+		GFF2930	0.14	-0.4
3,003,283	+		GFF2930	0.14	+0.8
3,003,283	-		GFF2930	0.14	-0.4
3,003,291	-		GFF2930	0.15	+0.5
3,003,325	+		GFF2930	0.19	+0.6
3,003,325	+		GFF2930	0.19	+0.9
3,003,333	-		GFF2930	0.20	-0.3
3,003,333	-		GFF2930	0.20	-0.2
3,003,363	-		GFF2930	0.23	-0.4
3,003,364	-		GFF2930	0.23	-0.1
3,003,389	-		GFF2930	0.26	-0.3
3,003,428	+		GFF2930	0.30	+0.5
3,003,428	+		GFF2930	0.30	-0.4
3,003,428	+		GFF2930	0.30	+0.2
3,003,428	+		GFF2930	0.30	-0.7
3,003,428	+		GFF2930	0.30	-1.2
3,003,428	+		GFF2930	0.30	-2.4
3,003,428	+		GFF2930	0.30	+0.4
3,003,428	+		GFF2930	0.30	-0.8
3,003,433	+		GFF2930	0.31	-2.2
3,003,436	-		GFF2930	0.31	+0.4
3,003,436	-		GFF2930	0.31	+1.0
3,003,436	-		GFF2930	0.31	-0.2
3,003,436	-		GFF2930	0.31	-0.5
3,003,436	-		GFF2930	0.31	-1.2
3,003,436	-		GFF2930	0.31	-1.3
3,003,436	-		GFF2930	0.31	-0.3
3,003,441	-		GFF2930	0.32	-0.1
3,003,459	+		GFF2930	0.34	-0.8
3,003,460	+		GFF2930	0.34	-0.5
3,003,460	+		GFF2930	0.34	+0.6
3,003,460	+		GFF2930	0.34	-1.3
3,003,468	-		GFF2930	0.35	-1.4
3,003,486	+		GFF2930	0.37	+0.6
3,003,486	+		GFF2930	0.37	-1.2
3,003,502	+		GFF2930	0.38	-0.4
3,003,517	+		GFF2930	0.40	+0.2
3,003,517	+		GFF2930	0.40	-0.6
3,003,523	+		GFF2930	0.41	-1.2
3,003,525	-		GFF2930	0.41	-0.2
3,003,542	+		GFF2930	0.43	+0.2
3,003,550	-		GFF2930	0.44	-0.3
3,003,550	-		GFF2930	0.44	+0.8
3,003,552	+		GFF2930	0.44	+1.1
3,003,552	+		GFF2930	0.44	+0.9
3,003,560	-		GFF2930	0.45	-0.3
3,003,560	-		GFF2930	0.45	-0.4
3,003,577	+		GFF2930	0.47	-0.7
3,003,585	-		GFF2930	0.48	+0.6
3,003,600	+		GFF2930	0.49	-0.2
3,003,605	+		GFF2930	0.50	-0.1
3,003,605	+		GFF2930	0.50	-0.2
3,003,608	-		GFF2930	0.50	+0.6
3,003,642	-		GFF2930	0.54	+1.6
3,003,643	+		GFF2930	0.54	+0.4
3,003,644	+		GFF2930	0.54	-0.1
3,003,646	+		GFF2930	0.55	-2.4
3,003,646	+		GFF2930	0.55	+1.0
3,003,651	+		GFF2930	0.55	+0.5
3,003,651	+		GFF2930	0.55	-0.3
3,003,652	-		GFF2930	0.55	+0.1
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