Strain Fitness in Sphingobium sp. HT1-2 around GFF2834

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
2,880,909	+		GFF2833	0.55	+0.5
2,880,909	+		GFF2833	0.55	+0.6
2,880,944	-		GFF2833	0.57	-1.1
2,880,946	+		GFF2833	0.57	+0.4
2,880,963	+		GFF2833	0.58	-0.1
2,880,963	+		GFF2833	0.58	-1.5
2,880,971	-		GFF2833	0.58	-1.2
2,880,971	-		GFF2833	0.58	+1.2
2,880,971	-		GFF2833	0.58	+0.3
2,881,007	+		GFF2833	0.60	-0.4
2,881,008	-		GFF2833	0.60	-0.7
2,881,010	-		GFF2833	0.61	-1.6
2,881,059	+		GFF2833	0.63	+0.3
2,881,059	+		GFF2833	0.63	+0.4
2,881,060	+		GFF2833	0.63	+1.0
2,881,066	+		GFF2833	0.64	-0.9
2,881,066	+		GFF2833	0.64	+0.3
2,881,067	+		GFF2833	0.64	-0.6
2,881,067	-		GFF2833	0.64	+0.7
2,881,067	-		GFF2833	0.64	-0.6
2,881,067	-		GFF2833	0.64	-1.7
2,881,067	-		GFF2833	0.64	-0.4
2,881,068	-		GFF2833	0.64	-0.9
2,881,074	-		GFF2833	0.64	+0.2
2,881,075	-		GFF2833	0.64	-1.3
2,881,105	+		GFF2833	0.66	+0.0
2,881,108	+		GFF2833	0.66	-0.3
2,881,113	-		GFF2833	0.66	+1.4
2,881,150	+		GFF2833	0.68	-2.4
2,881,158	-		GFF2833	0.69	-1.6
2,881,170	+		GFF2833	0.69	-0.9
2,881,170	+		GFF2833	0.69	-1.6
2,881,170	+		GFF2833	0.69	+1.2
2,881,170	+		GFF2833	0.69	-1.9
2,881,174	+		GFF2833	0.70	-0.9
2,881,178	-		GFF2833	0.70	-0.6
2,881,178	-		GFF2833	0.70	+0.2
2,881,182	-		GFF2833	0.70	-0.4
2,881,199	+		GFF2833	0.71	-2.4
2,881,199	+		GFF2833	0.71	-0.6
2,881,199	+		GFF2833	0.71	-2.3
2,881,199	+		GFF2833	0.71	+0.4
2,881,199	+		GFF2833	0.71	+0.5
2,881,199	+		GFF2833	0.71	-0.2
2,881,199	+		GFF2833	0.71	-0.0
2,881,199	+		GFF2833	0.71	-0.3
2,881,199	+		GFF2833	0.71	+0.0
2,881,199	+		GFF2833	0.71	+1.2
2,881,199	+		GFF2833	0.71	-1.1
2,881,199	+		GFF2833	0.71	+0.2
2,881,200	+		GFF2833	0.71	-0.9
2,881,202	-		GFF2833	0.71	-0.8
2,881,204	+		GFF2833	0.71	-1.9
2,881,207	-		GFF2833	0.71	-0.0
2,881,207	-		GFF2833	0.71	+0.4
2,881,207	-		GFF2833	0.71	+0.4
2,881,207	-		GFF2833	0.71	+0.1
2,881,207	-		GFF2833	0.71	+1.4
2,881,212	-		GFF2833	0.72	+0.2
2,881,212	-		GFF2833	0.72	-0.8
2,881,233	-		GFF2833	0.73	-1.3
2,881,249	-		GFF2833	0.74	-0.4
2,881,260	+		GFF2833	0.74	-1.5
2,881,295	+		GFF2833	0.76	-0.1
2,881,295	+		GFF2833	0.76	-0.0
2,881,295	+		GFF2833	0.76	+0.3
2,881,295	+		GFF2833	0.76	-1.9
2,881,295	+		GFF2833	0.76	-0.1
2,881,295	+		GFF2833	0.76	-0.6
2,881,295	+		GFF2833	0.76	-0.4
2,881,295	+		GFF2833	0.76	+0.0
2,881,295	+		GFF2833	0.76	-0.4
2,881,295	+		GFF2833	0.76	-1.3
2,881,295	+		GFF2833	0.76	-1.7
2,881,295	+		GFF2833	0.76	-0.8
2,881,295	+		GFF2833	0.76	-2.1
2,881,295	+		GFF2833	0.76	-0.4
2,881,295	+		GFF2833	0.76	-0.6
2,881,295	+		GFF2833	0.76	+0.3
2,881,295	+		GFF2833	0.76	-1.2
2,881,295	+		GFF2833	0.76	-1.3
2,881,295	+		GFF2833	0.76	+0.1
2,881,295	+		GFF2833	0.76	+0.8
2,881,303	-		GFF2833	0.77	+0.2
2,881,303	-		GFF2833	0.77	+0.4
2,881,303	-		GFF2833	0.77	-1.3
2,881,303	-		GFF2833	0.77	-0.5
2,881,303	-		GFF2833	0.77	+0.6
2,881,303	-		GFF2833	0.77	-1.6
2,881,303	-		GFF2833	0.77	-0.2
2,881,303	-		GFF2833	0.77	-1.4
2,881,303	-		GFF2833	0.77	-0.6
2,881,303	-		GFF2833	0.77	+0.4
2,881,303	-		GFF2833	0.77	-0.5
2,881,303	-		GFF2833	0.77	-1.9
2,881,303	-		GFF2833	0.77	-0.2
2,881,387	+		GFF2833	0.81	-0.6
2,881,395	-		GFF2833	0.82	-0.6
2,881,395	-		GFF2833	0.82	+0.4
2,881,395	-		GFF2833	0.82	+1.3
2,881,402	+		GFF2833	0.82	-1.3
2,881,402	-		GFF2833	0.82	+0.4
2,881,415	-		GFF2833	0.83	+0.4
2,881,434	-		GFF2833	0.84	+0.6
2,881,452	+		GFF2833	0.85	-2.6
2,881,467	-		GFF2833	0.86	-0.2
2,881,498	-		GFF2833	0.87	+0.2
2,881,510	+		GFF2833	0.88	-0.6
2,881,517	-		GFF2833	0.88	+0.9
2,881,518	-		GFF2833	0.88	-0.3
2,881,524	-		GFF2833	0.89	-0.6
2,881,541	+		GFF2833	0.90	-0.0
2,881,541	+		GFF2833	0.90	-0.5
2,881,541	+		GFF2833	0.90	+0.6
2,881,541	+		GFF2833	0.90	+0.1
2,881,543	-		GFF2833	0.90	-1.0
2,881,549	-				-1.2
2,881,549	-				-2.7
2,881,549	-				-0.4
2,881,556	+				-1.2
2,881,556	+				-1.8
2,881,556	+				+0.1
2,881,556	+				+0.5
2,881,556	+				-1.3
2,881,556	+				-0.6
2,881,556	+				-1.8
2,881,564	-				-1.2
2,881,564	-				-1.4
2,881,564	-				-0.6
2,881,575	+				+1.7
2,881,611	+				-0.5
2,881,611	+				-0.8
2,881,619	-				+1.0
2,881,619	-				-0.1
2,881,619	-				+1.5
2,881,655	+				-0.1
2,881,663	-				+0.0
2,881,686	-				-0.4
2,881,686	-				+0.2
2,881,701	-				+0.2
2,881,707	+				-0.0
2,881,724	+				-0.1
2,881,730	+				-0.5
2,881,730	+				-0.5
2,881,730	+				-0.3
2,881,738	-				+0.7
2,881,738	-				+0.3
2,881,738	-				+0.3
2,881,780	+				-0.3
2,881,798	-				-0.3
2,881,798	-				+1.5
2,881,798	-				+0.5
2,881,798	-				+0.4
2,881,798	-				-0.8
2,881,800	+				-0.5
2,881,805	+				-1.2
2,881,805	+				+1.3
2,881,805	+				-0.8
2,881,805	+				+1.0
2,881,805	+				-0.9
2,881,805	+				+1.2
2,881,805	+				-3.0
2,881,805	+				-1.3
2,881,805	+				-1.4
2,881,805	+				-0.9
2,881,805	+				+0.1
2,881,805	+				-2.2
2,881,808	-				-0.4
2,881,808	-				-0.4
2,881,813	-				+0.1
2,881,813	-				+0.9
2,881,813	-				+0.6
2,881,813	-				-0.4
2,881,813	-				-0.9
2,881,813	-				+0.1
2,881,813	-				+0.6
2,881,813	-				+0.4
2,881,813	-				+0.4
2,881,813	-				-2.2
2,881,813	-				-0.3
2,881,813	-				+0.1
2,881,813	-				-0.7
2,881,813	-				-0.3
2,881,813	-				-0.5
2,881,838	+				-0.7
2,881,844	-				+0.9
2,881,844	-				+0.0
2,881,854	-				+0.4
2,881,872	+				-0.0
2,881,872	+				-1.2
2,881,905	+				-0.7
2,881,911	+				-2.0
2,881,920	-				-0.6
2,881,931	+				-1.3
2,881,936	+				+0.1
2,881,939	-				+0.5
2,881,940	+				+0.2
2,881,940	+				-1.5
2,881,957	+				+0.1
2,881,961	-				+0.4
2,881,985	+				-0.0
2,882,000	+		GFF2834	0.11	-1.1
2,882,000	+		GFF2834	0.11	+0.1
2,882,000	+		GFF2834	0.11	-0.3
2,882,000	+		GFF2834	0.11	+0.2
2,882,000	-		GFF2834	0.11	+0.2
2,882,006	+		GFF2834	0.12	-0.4
2,882,008	-		GFF2834	0.12	+0.6
2,882,008	-		GFF2834	0.12	-0.7
2,882,027	+		GFF2834	0.14	-0.3
2,882,027	+		GFF2834	0.14	-1.4
2,882,030	+		GFF2834	0.14	+0.7
2,882,030	+		GFF2834	0.14	-1.8
2,882,032	+		GFF2834	0.14	-1.4
2,882,032	+		GFF2834	0.14	-0.6
2,882,032	+		GFF2834	0.14	-0.5
2,882,038	-		GFF2834	0.15	+0.3
2,882,038	-		GFF2834	0.15	+1.2
2,882,040	-		GFF2834	0.15	-0.7
2,882,040	-		GFF2834	0.15	-0.6
2,882,040	-		GFF2834	0.15	+0.9
2,882,040	-		GFF2834	0.15	-0.0
2,882,040	-		GFF2834	0.15	+0.6
2,882,075	+		GFF2834	0.18	-0.1
2,882,075	+		GFF2834	0.18	-1.4
2,882,077	+		GFF2834	0.19	+0.7
2,882,083	-		GFF2834	0.19	+1.3
2,882,083	-		GFF2834	0.19	+0.4
2,882,085	-		GFF2834	0.19	-1.7
2,882,091	-		GFF2834	0.20	+0.9
2,882,099	-		GFF2834	0.21	-0.3
2,882,099	-		GFF2834	0.21	-0.7
2,882,128	+		GFF2834	0.24	+0.8
2,882,144	-		GFF2834	0.25	-0.1
2,882,146	+		GFF2834	0.25	-2.0
2,882,166	+		GFF2834	0.27	+0.7
2,882,166	+		GFF2834	0.27	-0.9
2,882,166	+		GFF2834	0.27	+0.8
2,882,166	+		GFF2834	0.27	+0.1
2,882,166	+		GFF2834	0.27	-2.9
2,882,166	+		GFF2834	0.27	-0.1
2,882,166	-		GFF2834	0.27	-0.2
2,882,171	+		GFF2834	0.28	-0.2
2,882,171	+		GFF2834	0.28	-0.2
2,882,171	+		GFF2834	0.28	-1.4
2,882,171	+		GFF2834	0.28	-1.6
2,882,174	-		GFF2834	0.28	-0.9
2,882,174	-		GFF2834	0.28	+0.3
2,882,179	-		GFF2834	0.29	-0.9
2,882,179	-		GFF2834	0.29	+0.3
2,882,179	-		GFF2834	0.29	+0.3
2,882,179	-		GFF2834	0.29	-0.2
2,882,188	+		GFF2834	0.29	-0.5
2,882,188	+		GFF2834	0.29	+0.4
2,882,196	+		GFF2834	0.30	-1.9
2,882,196	-		GFF2834	0.30	+1.2
2,882,196	-		GFF2834	0.30	-0.9
2,882,196	-		GFF2834	0.30	-0.9
2,882,204	-		GFF2834	0.31	-2.2
2,882,204	-		GFF2834	0.31	-1.9
2,882,206	+		GFF2834	0.31	+1.4
2,882,206	+		GFF2834	0.31	-0.5
2,882,206	+		GFF2834	0.31	-2.1
2,882,206	+		GFF2834	0.31	-0.1
2,882,206	+		GFF2834	0.31	+0.6
2,882,214	-		GFF2834	0.32	-0.0
2,882,216	+		GFF2834	0.32	+1.3
2,882,216	+		GFF2834	0.32	+0.3
2,882,216	+		GFF2834	0.32	+0.3
2,882,224	-		GFF2834	0.33	-1.6
2,882,224	-		GFF2834	0.33	-0.5
2,882,224	-		GFF2834	0.33	+0.7
2,882,224	-		GFF2834	0.33	+1.3
2,882,260	-		GFF2834	0.36	+0.5
2,882,274	+		GFF2834	0.38	-0.0
2,882,287	-		GFF2834	0.39	-1.0
2,882,311	+		GFF2834	0.41	+0.6
2,882,331	-		GFF2834	0.43	-0.1
2,882,361	+		GFF2834	0.46	-2.6
2,882,371	-		GFF2834	0.47	-0.4
2,882,376	-		GFF2834	0.48	+1.9
2,882,378	+		GFF2834	0.48	-1.3
2,882,378	+		GFF2834	0.48	+0.3
2,882,381	-		GFF2834	0.48	-0.2
2,882,381	-		GFF2834	0.48	-2.9
2,882,425	-		GFF2834	0.53	-1.5
2,882,454	-		GFF2834	0.55	-1.0
2,882,454	-		GFF2834	0.55	-1.7
2,882,509	+		GFF2834	0.61	+1.0
2,882,509	+		GFF2834	0.61	-0.4
2,882,509	+		GFF2834	0.61	-1.5
2,882,517	-		GFF2834	0.62	-0.0
2,882,517	-		GFF2834	0.62	-1.1
2,882,517	-		GFF2834	0.62	+1.5
2,882,517	-		GFF2834	0.62	-1.5
2,882,517	-		GFF2834	0.62	-1.5
2,882,527	-		GFF2834	0.63	-0.7
2,882,527	-		GFF2834	0.63	+0.1
2,882,531	+		GFF2834	0.63	-2.2
2,882,534	-		GFF2834	0.63	+0.3
2,882,536	+		GFF2834	0.63	-0.2
2,882,539	-		GFF2834	0.64	-0.3
2,882,554	+		GFF2834	0.65	+1.1
2,882,554	+		GFF2834	0.65	+0.2
2,882,554	+		GFF2834	0.65	-0.4
2,882,562	-		GFF2834	0.66	-0.9
2,882,562	-		GFF2834	0.66	+0.4
2,882,584	-		GFF2834	0.68	-2.3
2,882,635	+		GFF2834	0.73	-0.2
2,882,656	+		GFF2834	0.75	-2.5
2,882,656	+		GFF2834	0.75	+1.3
2,882,656	+		GFF2834	0.75	-1.3
2,882,656	+		GFF2834	0.75	-0.4
2,882,664	-		GFF2834	0.76	-0.6
2,882,664	-		GFF2834	0.76	+0.5
2,882,730	-		GFF2834	0.82	-1.1
2,882,732	+		GFF2834	0.83	-0.1
2,882,735	-		GFF2834	0.83	-0.1
2,882,755	+		GFF2834	0.85	-0.6
2,882,775	+		GFF2834	0.87	-0.0
2,882,775	+		GFF2834	0.87	+0.2
2,882,775	+		GFF2834	0.87	-2.0
2,882,783	-		GFF2834	0.88	+1.2
2,882,783	-		GFF2834	0.88	+0.4
2,882,783	-		GFF2834	0.88	+0.3
2,882,790	+		GFF2834	0.88	-0.5
2,882,798	-		GFF2834	0.89	-0.9
2,882,798	-		GFF2834	0.89	+0.1
2,882,798	-		GFF2834	0.89	-0.4
2,882,802	-		GFF2834	0.89	+0.4
2,882,811	+				-0.3
2,882,811	+				-1.9
2,882,817	+				-1.5
2,882,817	+				-0.2
2,882,817	+				-0.7
2,882,820	-				-0.3
2,882,825	-				-1.3
2,882,825	-				-1.8
2,882,825	-				+0.0
2,882,825	-				-1.2
2,882,825	-				-1.4
2,882,851	-				-0.4
2,882,865	-				-1.6
2,882,871	-				-1.8
2,882,873	+				-1.2
2,882,878	+				-0.5
2,882,886	-				+0.5
2,882,904	+				+1.2
2,882,904	+				-2.2
2,882,904	+				-1.0
2,882,904	+				+1.2
2,882,904	+				-0.1
2,882,912	-				-2.3
2,882,912	-				-0.9
2,882,912	-				+0.3
2,882,912	-				-0.4
2,882,912	-				+0.4
2,882,912	-				-0.0
2,882,912	-				-0.4
2,882,912	-				-2.0
2,882,917	-				+0.2
2,882,931	+				-0.2
2,882,936	+				-0.5
2,882,937	+				+0.4
2,882,937	+				+0.2
2,882,937	+				+0.8
2,882,937	+				+0.1
2,882,937	+				+0.5
2,882,937	+				-2.5
2,882,937	+				-1.3
2,882,937	+				-0.9
2,882,944	-				-0.9
2,882,945	+				-0.9
2,882,945	-				+1.0
2,882,945	-				-1.2
2,882,945	-				+0.7
2,882,945	-				+0.1
2,882,945	-				-0.4
2,882,947	+				-1.6
2,882,947	+				-1.3
2,882,947	+				+0.5
2,882,947	+				-2.1
2,882,955	-				-0.2
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