Strain Fitness in Sphingobium sp. HT1-2 around GFF277

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF275 and GFF276 are separated by 68 nucleotidesGFF276 and GFF277 are separated by 4 nucleotidesGFF277 and GFF278 overlap by 1 nucleotidesGFF278 and GFF279 overlap by 11 nucleotidesGFF279 and GFF280 overlap by 4 nucleotides GFF275 - hypothetical protein, at 271,283 to 272,290 GFF275 GFF276 - hypothetical protein, at 272,359 to 272,943 GFF276 GFF277 - hypothetical protein, at 272,948 to 273,352 GFF277 GFF278 - hypothetical protein, at 273,352 to 273,663 GFF278 GFF279 - hypothetical protein, at 273,653 to 273,994 GFF279 GFF280 - hypothetical protein, at 273,991 to 274,344 GFF280 Position (kb) 272 273 274Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 271.961 kb on + strand, within GFF275at 271.966 kb on - strand, within GFF275at 271.974 kb on + strand, within GFF275at 271.974 kb on + strand, within GFF275at 271.977 kb on - strand, within GFF275at 271.989 kb on + strand, within GFF275at 271.996 kb on + strand, within GFF275at 271.996 kb on + strand, within GFF275at 272.004 kb on - strand, within GFF275at 272.013 kb on - strand, within GFF275at 272.051 kb on + strand, within GFF275at 272.051 kb on + strand, within GFF275at 272.051 kb on + strand, within GFF275at 272.059 kb on - strand, within GFF275at 272.059 kb on - strand, within GFF275at 272.059 kb on - strand, within GFF275at 272.059 kb on - strand, within GFF275at 272.062 kb on - strand, within GFF275at 272.062 kb on - strand, within GFF275at 272.092 kb on - strand, within GFF275at 272.127 kb on + strand, within GFF275at 272.127 kb on + strand, within GFF275at 272.135 kb on - strand, within GFF275at 272.143 kb on + strand, within GFF275at 272.143 kb on + strand, within GFF275at 272.143 kb on + strand, within GFF275at 272.156 kb on + strand, within GFF275at 272.156 kb on + strand, within GFF275at 272.174 kb on + strand, within GFF275at 272.176 kb on + strand, within GFF275at 272.191 kb on - strandat 272.207 kb on + strandat 272.212 kb on + strandat 272.214 kb on - strandat 272.220 kb on - strandat 272.220 kb on - strandat 272.220 kb on - strandat 272.220 kb on - strandat 272.469 kb on - strand, within GFF276at 272.477 kb on - strand, within GFF276at 272.566 kb on + strand, within GFF276at 272.566 kb on + strand, within GFF276at 272.569 kb on + strand, within GFF276at 272.582 kb on + strand, within GFF276at 272.582 kb on + strand, within GFF276at 272.584 kb on + strand, within GFF276at 272.590 kb on - strand, within GFF276at 272.590 kb on - strand, within GFF276at 272.661 kb on + strand, within GFF276at 272.661 kb on - strand, within GFF276at 272.661 kb on - strand, within GFF276at 272.674 kb on - strand, within GFF276at 272.674 kb on - strand, within GFF276at 272.719 kb on - strand, within GFF276at 272.754 kb on + strand, within GFF276at 272.762 kb on - strand, within GFF276at 272.762 kb on - strand, within GFF276at 272.764 kb on - strand, within GFF276at 272.886 kb on - strandat 272.909 kb on - strandat 272.909 kb on - strandat 272.909 kb on - strandat 272.953 kb on + strandat 272.996 kb on - strand, within GFF277at 273.057 kb on + strand, within GFF277at 273.065 kb on - strand, within GFF277at 273.065 kb on - strand, within GFF277at 273.113 kb on - strand, within GFF277at 273.137 kb on - strand, within GFF277at 273.137 kb on - strand, within GFF277at 273.184 kb on + strand, within GFF277at 273.212 kb on - strand, within GFF277at 273.255 kb on + strand, within GFF277at 273.263 kb on - strand, within GFF277at 273.298 kb on + strand, within GFF277at 273.298 kb on + strand, within GFF277at 273.305 kb on + strand, within GFF277at 273.322 kb on + strandat 273.333 kb on + strandat 273.342 kb on - strandat 273.372 kb on + strandat 273.372 kb on + strandat 273.380 kb on - strandat 273.407 kb on + strand, within GFF278at 273.445 kb on - strand, within GFF278at 273.459 kb on - strand, within GFF278at 273.460 kb on + strand, within GFF278at 273.460 kb on + strand, within GFF278at 273.460 kb on + strand, within GFF278at 273.466 kb on - strand, within GFF278at 273.468 kb on - strand, within GFF278at 273.468 kb on - strand, within GFF278at 273.468 kb on - strand, within GFF278at 273.488 kb on + strand, within GFF278at 273.496 kb on - strand, within GFF278at 273.497 kb on + strand, within GFF278at 273.497 kb on + strand, within GFF278at 273.497 kb on + strand, within GFF278at 273.505 kb on - strand, within GFF278at 273.536 kb on - strand, within GFF278at 273.568 kb on + strand, within GFF278at 273.575 kb on - strand, within GFF278at 273.576 kb on - strand, within GFF278at 273.591 kb on - strand, within GFF278at 273.608 kb on + strand, within GFF278at 273.608 kb on - strand, within GFF278at 273.616 kb on - strand, within GFF278at 273.634 kb on - strandat 273.641 kb on + strandat 273.642 kb on - strandat 273.649 kb on - strandat 273.651 kb on - strandat 273.659 kb on + strandat 273.659 kb on + strandat 273.659 kb on - strandat 273.708 kb on + strand, within GFF279at 273.722 kb on + strand, within GFF279at 273.722 kb on + strand, within GFF279at 273.728 kb on - strand, within GFF279at 273.730 kb on - strand, within GFF279at 273.739 kb on + strand, within GFF279at 273.739 kb on + strand, within GFF279at 273.739 kb on + strand, within GFF279at 273.739 kb on + strand, within GFF279at 273.744 kb on + strand, within GFF279at 273.747 kb on - strand, within GFF279at 273.747 kb on - strand, within GFF279at 273.747 kb on - strand, within GFF279at 273.747 kb on - strand, within GFF279at 273.747 kb on - strand, within GFF279at 273.747 kb on - strand, within GFF279at 273.765 kb on - strand, within GFF279at 273.770 kb on + strand, within GFF279at 273.771 kb on - strand, within GFF279at 273.813 kb on + strand, within GFF279at 273.813 kb on + strand, within GFF279at 273.813 kb on + strand, within GFF279at 273.813 kb on + strand, within GFF279at 273.813 kb on + strand, within GFF279at 273.813 kb on + strand, within GFF279at 273.813 kb on + strand, within GFF279at 273.813 kb on + strand, within GFF279at 273.813 kb on + strand, within GFF279at 273.813 kb on + strand, within GFF279at 273.813 kb on + strand, within GFF279at 273.813 kb on + strand, within GFF279at 273.813 kb on + strand, within GFF279at 273.813 kb on + strand, within GFF279at 273.813 kb on + strand, within GFF279at 273.821 kb on - strand, within GFF279at 273.821 kb on - strand, within GFF279at 273.821 kb on - strand, within GFF279at 273.821 kb on - strand, within GFF279at 273.821 kb on - strand, within GFF279at 273.821 kb on - strand, within GFF279at 273.821 kb on - strand, within GFF279at 273.821 kb on - strand, within GFF279at 273.823 kb on - strand, within GFF279at 273.838 kb on - strand, within GFF279at 273.846 kb on - strand, within GFF279at 273.858 kb on - strand, within GFF279at 273.871 kb on - strand, within GFF279at 273.871 kb on - strand, within GFF279at 273.871 kb on - strand, within GFF279at 273.927 kb on + strand, within GFF279at 273.927 kb on + strand, within GFF279at 273.927 kb on + strand, within GFF279at 273.935 kb on - strand, within GFF279at 273.937 kb on + strand, within GFF279at 273.943 kb on + strand, within GFF279at 273.966 kb on - strandat 273.983 kb on - strandat 273.985 kb on + strandat 273.990 kb on + strandat 273.995 kb on + strandat 274.003 kb on - strandat 274.003 kb on - strandat 274.003 kb on - strandat 274.003 kb on - strandat 274.004 kb on + strandat 274.009 kb on + strandat 274.017 kb on + strandat 274.019 kb on + strandat 274.025 kb on - strandat 274.025 kb on - strandat 274.027 kb on - strand, within GFF280at 274.029 kb on + strand, within GFF280at 274.029 kb on + strand, within GFF280at 274.037 kb on - strand, within GFF280at 274.037 kb on - strand, within GFF280at 274.037 kb on - strand, within GFF280at 274.061 kb on + strand, within GFF280at 274.061 kb on + strand, within GFF280at 274.069 kb on - strand, within GFF280at 274.105 kb on + strand, within GFF280at 274.105 kb on + strand, within GFF280at 274.126 kb on - strand, within GFF280at 274.128 kb on + strand, within GFF280at 274.291 kb on + strand, within GFF280at 274.317 kb on - strandat 274.347 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with D-Glucose and Ammonium Sulfate
remove
271,961 + GFF275 0.67 -0.2
271,966 - GFF275 0.68 -1.9
271,974 + GFF275 0.69 -0.6
271,974 + GFF275 0.69 -0.5
271,977 - GFF275 0.69 +0.1
271,989 + GFF275 0.70 +1.0
271,996 + GFF275 0.71 +1.7
271,996 + GFF275 0.71 +0.3
272,004 - GFF275 0.72 -1.9
272,013 - GFF275 0.72 -0.9
272,051 + GFF275 0.76 +0.3
272,051 + GFF275 0.76 +0.4
272,051 + GFF275 0.76 -0.6
272,059 - GFF275 0.77 -0.8
272,059 - GFF275 0.77 -1.2
272,059 - GFF275 0.77 +1.2
272,059 - GFF275 0.77 +1.1
272,062 - GFF275 0.77 -0.9
272,062 - GFF275 0.77 +0.9
272,092 - GFF275 0.80 +0.4
272,127 + GFF275 0.84 -0.1
272,127 + GFF275 0.84 +1.6
272,135 - GFF275 0.85 +2.7
272,143 + GFF275 0.85 +0.3
272,143 + GFF275 0.85 -0.3
272,143 + GFF275 0.85 +0.3
272,156 + GFF275 0.87 -1.1
272,156 + GFF275 0.87 +0.2
272,174 + GFF275 0.88 -1.4
272,176 + GFF275 0.89 +1.2
272,191 - +0.8
272,207 + +0.6
272,212 + +0.2
272,214 - +0.2
272,220 - +0.9
272,220 - +0.8
272,220 - -0.0
272,220 - -1.2
272,469 - GFF276 0.19 -1.1
272,477 - GFF276 0.20 -0.8
272,566 + GFF276 0.35 -1.2
272,566 + GFF276 0.35 -1.2
272,569 + GFF276 0.36 -2.2
272,582 + GFF276 0.38 -1.8
272,582 + GFF276 0.38 -0.6
272,584 + GFF276 0.38 -0.9
272,590 - GFF276 0.39 +0.3
272,590 - GFF276 0.39 +1.2
272,661 + GFF276 0.52 -0.6
272,661 - GFF276 0.52 +0.8
272,661 - GFF276 0.52 +0.6
272,674 - GFF276 0.54 -0.4
272,674 - GFF276 0.54 -1.8
272,719 - GFF276 0.62 +1.0
272,754 + GFF276 0.68 +1.6
272,762 - GFF276 0.69 +0.7
272,762 - GFF276 0.69 +1.2
272,764 - GFF276 0.69 -0.9
272,886 - -0.2
272,909 - -0.9
272,909 - -0.1
272,909 - -2.5
272,953 + -1.1
272,996 - GFF277 0.12 -1.1
273,057 + GFF277 0.27 -1.9
273,065 - GFF277 0.29 -0.2
273,065 - GFF277 0.29 -1.4
273,113 - GFF277 0.41 -0.1
273,137 - GFF277 0.47 -0.4
273,137 - GFF277 0.47 -0.2
273,184 + GFF277 0.58 +2.6
273,212 - GFF277 0.65 -1.4
273,255 + GFF277 0.76 -0.3
273,263 - GFF277 0.78 +1.1
273,298 + GFF277 0.86 +0.8
273,298 + GFF277 0.86 -0.2
273,305 + GFF277 0.88 +1.9
273,322 + +0.6
273,333 + +0.3
273,342 - +0.1
273,372 + -0.3
273,372 + -0.5
273,380 - -0.6
273,407 + GFF278 0.18 -1.8
273,445 - GFF278 0.30 +1.7
273,459 - GFF278 0.34 +0.1
273,460 + GFF278 0.35 +1.6
273,460 + GFF278 0.35 -0.7
273,460 + GFF278 0.35 -0.5
273,466 - GFF278 0.37 -2.5
273,468 - GFF278 0.37 -1.8
273,468 - GFF278 0.37 +0.7
273,468 - GFF278 0.37 -0.4
273,488 + GFF278 0.44 -1.7
273,496 - GFF278 0.46 -0.8
273,497 + GFF278 0.46 -1.1
273,497 + GFF278 0.46 -1.0
273,497 + GFF278 0.46 +1.8
273,505 - GFF278 0.49 +0.1
273,536 - GFF278 0.59 +0.4
273,568 + GFF278 0.69 +0.4
273,575 - GFF278 0.71 -0.5
273,576 - GFF278 0.72 -1.1
273,591 - GFF278 0.77 +0.5
273,608 + GFF278 0.82 -0.1
273,608 - GFF278 0.82 -0.7
273,616 - GFF278 0.85 -0.1
273,634 - -0.8
273,641 + -1.2
273,642 - -0.5
273,649 - -0.6
273,651 - -0.1
273,659 + -2.5
273,659 + +0.6
273,659 - +0.5
273,708 + GFF279 0.16 -0.7
273,722 + GFF279 0.20 -0.1
273,722 + GFF279 0.20 -0.4
273,728 - GFF279 0.22 +2.1
273,730 - GFF279 0.23 +0.3
273,739 + GFF279 0.25 +0.6
273,739 + GFF279 0.25 +0.9
273,739 + GFF279 0.25 +0.8
273,739 + GFF279 0.25 +2.6
273,744 + GFF279 0.27 +0.8
273,747 - GFF279 0.27 +1.0
273,747 - GFF279 0.27 -0.1
273,747 - GFF279 0.27 -0.4
273,747 - GFF279 0.27 +0.3
273,747 - GFF279 0.27 -2.1
273,747 - GFF279 0.27 -2.8
273,765 - GFF279 0.33 -1.2
273,770 + GFF279 0.34 +2.0
273,771 - GFF279 0.35 +0.3
273,813 + GFF279 0.47 +1.2
273,813 + GFF279 0.47 +0.1
273,813 + GFF279 0.47 +0.8
273,813 + GFF279 0.47 +0.5
273,813 + GFF279 0.47 -1.1
273,813 + GFF279 0.47 +0.1
273,813 + GFF279 0.47 +0.4
273,813 + GFF279 0.47 +1.2
273,813 + GFF279 0.47 -0.4
273,813 + GFF279 0.47 +1.0
273,813 + GFF279 0.47 +1.7
273,813 + GFF279 0.47 +0.0
273,813 + GFF279 0.47 -0.6
273,813 + GFF279 0.47 -0.7
273,813 + GFF279 0.47 -0.4
273,821 - GFF279 0.49 -0.2
273,821 - GFF279 0.49 -0.3
273,821 - GFF279 0.49 +0.3
273,821 - GFF279 0.49 +0.3
273,821 - GFF279 0.49 +0.4
273,821 - GFF279 0.49 +0.7
273,821 - GFF279 0.49 +1.5
273,821 - GFF279 0.49 +1.4
273,823 - GFF279 0.50 -0.2
273,838 - GFF279 0.54 -1.9
273,846 - GFF279 0.56 -0.3
273,858 - GFF279 0.60 +0.4
273,871 - GFF279 0.64 +0.0
273,871 - GFF279 0.64 +0.4
273,871 - GFF279 0.64 -1.1
273,927 + GFF279 0.80 +0.6
273,927 + GFF279 0.80 +0.8
273,927 + GFF279 0.80 -2.5
273,935 - GFF279 0.82 +1.0
273,937 + GFF279 0.83 -1.7
273,943 + GFF279 0.85 -0.1
273,966 - -1.2
273,983 - +0.4
273,985 + -1.5
273,990 + +1.7
273,995 + -1.9
274,003 - -0.2
274,003 - +0.1
274,003 - -0.3
274,003 - -0.3
274,004 + +0.2
274,009 + -0.4
274,017 + -0.2
274,019 + +1.4
274,025 - -0.2
274,025 - +0.3
274,027 - GFF280 0.10 -1.8
274,029 + GFF280 0.11 +0.2
274,029 + GFF280 0.11 -0.5
274,037 - GFF280 0.13 -0.9
274,037 - GFF280 0.13 -0.8
274,037 - GFF280 0.13 +1.8
274,061 + GFF280 0.20 -0.8
274,061 + GFF280 0.20 +0.1
274,069 - GFF280 0.22 +1.0
274,105 + GFF280 0.32 +0.1
274,105 + GFF280 0.32 -1.0
274,126 - GFF280 0.38 +0.6
274,128 + GFF280 0.39 +2.3
274,291 + GFF280 0.85 +0.4
274,317 - -0.3
274,347 - -0.9

Or see this region's nucleotide sequence