Strain Fitness in Sphingobium sp. HT1-2 around GFF2481

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
2,503,307	-		GFF2480	0.26	-1.9
2,503,331	+		GFF2480	0.30	-0.9
2,503,331	+		GFF2480	0.30	+0.0
2,503,331	+		GFF2480	0.30	-0.0
2,503,331	+		GFF2480	0.30	+0.9
2,503,339	-		GFF2480	0.32	-1.1
2,503,339	-		GFF2480	0.32	-0.5
2,503,339	-		GFF2480	0.32	-1.8
2,503,339	-		GFF2480	0.32	-2.9
2,503,353	+		GFF2480	0.35	+0.6
2,503,359	+		GFF2480	0.36	+0.6
2,503,359	+		GFF2480	0.36	-1.5
2,503,361	-		GFF2480	0.36	-1.3
2,503,367	-		GFF2480	0.38	+0.7
2,503,367	-		GFF2480	0.38	-2.5
2,503,372	-		GFF2480	0.39	-1.5
2,503,395	-		GFF2480	0.43	+0.2
2,503,403	-		GFF2480	0.45	+0.3
2,503,410	+		GFF2480	0.46	-0.9
2,503,412	+		GFF2480	0.47	+0.1
2,503,418	-		GFF2480	0.48	-1.2
2,503,450	+		GFF2480	0.54	-1.0
2,503,471	+		GFF2480	0.58	-1.8
2,503,477	+		GFF2480	0.60	+0.2
2,503,480	-		GFF2480	0.60	-0.3
2,503,482	+		GFF2480	0.61	-0.1
2,503,493	+		GFF2480	0.63	-0.8
2,503,493	+		GFF2480	0.63	+0.6
2,503,496	-		GFF2480	0.63	-0.1
2,503,501	-		GFF2480	0.64	-1.3
2,503,503	+		GFF2480	0.65	+0.1
2,503,503	+		GFF2480	0.65	-0.7
2,503,508	+		GFF2480	0.66	-1.7
2,503,508	+		GFF2480	0.66	+0.8
2,503,509	+		GFF2480	0.66	+0.5
2,503,511	-		GFF2480	0.66	+1.0
2,503,516	-		GFF2480	0.67	-0.5
2,503,516	-		GFF2480	0.67	+0.6
2,503,516	-		GFF2480	0.67	-1.5
2,503,516	-		GFF2480	0.67	+0.1
2,503,516	-		GFF2480	0.67	-2.9
2,503,516	-		GFF2480	0.67	-0.4
2,503,520	+		GFF2480	0.68	+0.4
2,503,520	+		GFF2480	0.68	-0.1
2,503,520	+		GFF2480	0.68	+1.1
2,503,522	-		GFF2480	0.69	-0.4
2,503,522	-		GFF2480	0.69	-2.4
2,503,535	+		GFF2480	0.71	+0.4
2,503,551	+		GFF2480	0.74	-1.0
2,503,551	+		GFF2480	0.74	-0.1
2,503,551	+		GFF2480	0.74	-0.3
2,503,551	+		GFF2480	0.74	-0.5
2,503,552	-		GFF2480	0.75	-0.8
2,503,559	-		GFF2480	0.76	-2.0
2,503,559	-		GFF2480	0.76	+1.1
2,503,559	-		GFF2480	0.76	-0.1
2,503,591	+		GFF2480	0.83	-0.2
2,503,625	+		GFF2480	0.89	-2.3
2,503,627	-		GFF2480	0.90	+0.5
2,503,633	-				+0.4
2,503,640	+				-0.7
2,503,640	+				-0.1
2,503,640	+				-1.7
2,503,640	+				-1.0
2,503,640	+				+0.2
2,503,641	+				-0.2
2,503,648	-				-0.5
2,503,648	-				-0.1
2,503,648	-				+0.8
2,503,648	-				+0.1
2,503,648	-				-0.3
2,503,648	-				+0.6
2,503,779	+				-0.0
2,503,779	+				+1.5
2,503,787	-				+0.9
2,503,787	-				-1.0
2,503,789	+				-2.9
2,503,819	+				-0.4
2,503,832	-				+0.9
2,503,851	-				+0.4
2,503,868	-				+0.2
2,503,908	-				-0.0
2,503,925	-				+0.8
2,503,934	-				+0.6
2,503,968	-				-0.7
2,503,997	+				-2.0
2,504,033	-				+0.3
2,504,035	+				-0.3
2,504,038	-				-0.8
2,504,053	+				+0.7
2,504,059	+				-2.2
2,504,060	-				+0.2
2,504,067	-				+0.6
2,504,067	-				-0.2
2,504,077	+				+0.3
2,504,077	+				-0.5
2,504,085	-				-0.0
2,504,085	-				-0.8
2,504,087	-				+0.2
2,504,107	-				+0.2
2,504,108	+				-0.2
2,504,121	-				-2.3
2,504,153	-				-0.4
2,504,154	-				-0.9
2,504,155	+				-0.9
2,504,168	+				+0.2
2,504,228	-				-0.5
2,504,229	+				-2.5
2,504,229	+				+0.5
2,504,237	-				+1.2
2,504,237	-				-0.4
2,504,249	+				+1.4
2,504,250	+				-1.2
2,504,250	+				-1.7
2,504,258	-				-0.7
2,504,258	-				-0.1
2,504,260	+				-0.3
2,504,260	+				-1.6
2,504,260	+				-0.0
2,504,260	+				-1.5
2,504,260	+				+0.0
2,504,260	+				+1.4
2,504,260	+				-1.3
2,504,260	+				+0.2
2,504,260	+				-0.2
2,504,260	+				+1.4
2,504,260	+				-1.6
2,504,260	+				-0.2
2,504,260	+				+0.5
2,504,260	+				+0.6
2,504,260	+				+0.9
2,504,260	+				+1.5
2,504,260	+				-0.4
2,504,260	+				-1.3
2,504,268	-				-0.8
2,504,268	-				-0.1
2,504,268	-				-1.6
2,504,268	-				-0.0
2,504,268	-				-1.2
2,504,268	-				-0.8
2,504,268	-				-1.4
2,504,268	-				-1.0
2,504,268	-				+0.2
2,504,268	-				+1.1
2,504,268	-				-0.5
2,504,268	-				+0.1
2,504,268	-				+0.1
2,504,268	-				+0.2
2,504,272	+				-0.2
2,504,280	-				+0.1
2,504,280	-				-2.2
2,504,299	+				-0.4
2,504,299	+				+0.5
2,504,299	+				-1.2
2,504,299	+				+0.7
2,504,301	+				-1.3
2,504,301	+				-1.6
2,504,306	+				-2.5
2,504,307	-				-1.1
2,504,307	-				-1.1
2,504,307	-				-0.0
2,504,309	-				+0.2
2,504,312	-				-0.7
2,504,314	-				-1.5
2,504,318	+				-2.1
2,504,336	-				-3.0
2,504,347	+				-1.5
2,504,437	+		GFF2481	0.15	-1.6
2,504,463	-		GFF2481	0.18	-2.3
2,504,463	-		GFF2481	0.18	-1.4
2,504,483	+		GFF2481	0.20	-1.8
2,504,511	+		GFF2481	0.23	-1.4
2,504,511	+		GFF2481	0.23	-3.3
2,504,511	+		GFF2481	0.23	-2.5
2,504,511	+		GFF2481	0.23	-1.6
2,504,511	+		GFF2481	0.23	-2.2
2,504,511	+		GFF2481	0.23	-3.6
2,504,511	+		GFF2481	0.23	-1.4
2,504,519	-		GFF2481	0.24	-2.0
2,504,519	-		GFF2481	0.24	-2.7
2,504,519	-		GFF2481	0.24	-1.7
2,504,519	-		GFF2481	0.24	-1.7
2,504,519	-		GFF2481	0.24	-1.8
2,504,526	+		GFF2481	0.25	-2.6
2,504,551	+		GFF2481	0.28	-1.6
2,504,566	-		GFF2481	0.30	-2.6
2,504,566	-		GFF2481	0.30	-2.5
2,504,567	-		GFF2481	0.30	+0.1
2,504,590	+		GFF2481	0.32	-2.6
2,504,592	-		GFF2481	0.32	-0.9
2,504,647	-		GFF2481	0.39	-2.5
2,504,675	+		GFF2481	0.42	-2.1
2,504,689	+		GFF2481	0.43	-1.8
2,504,689	+		GFF2481	0.43	-1.9
2,504,689	+		GFF2481	0.43	-0.4
2,504,689	+		GFF2481	0.43	-3.1
2,504,697	-		GFF2481	0.44	-3.7
2,504,697	-		GFF2481	0.44	-2.9
2,504,718	+		GFF2481	0.47	-1.9
2,504,722	+		GFF2481	0.47	-2.0
2,504,727	+		GFF2481	0.48	-3.0
2,504,758	+		GFF2481	0.51	-1.2
2,504,762	-		GFF2481	0.52	-2.6
2,504,767	-		GFF2481	0.52	-2.8
2,504,771	+		GFF2481	0.53	-1.7
2,504,774	-		GFF2481	0.53	-2.3
2,504,781	-		GFF2481	0.54	-2.4
2,504,781	-		GFF2481	0.54	-3.3
2,504,802	-		GFF2481	0.56	-2.2
2,504,805	+		GFF2481	0.56	-4.2
2,504,817	-		GFF2481	0.58	-2.8
2,504,817	-		GFF2481	0.58	-1.7
2,504,821	+		GFF2481	0.58	-3.0
2,504,840	+		GFF2481	0.60	-2.0
2,504,848	-		GFF2481	0.61	-2.6
2,504,853	+		GFF2481	0.62	-1.1
2,504,863	+		GFF2481	0.63	-1.7
2,504,869	+		GFF2481	0.64	-1.2
2,504,871	-		GFF2481	0.64	-2.1
2,504,871	-		GFF2481	0.64	-2.7
2,504,871	-		GFF2481	0.64	-2.5
2,504,871	-		GFF2481	0.64	-2.7
2,504,901	+		GFF2481	0.67	-1.2
2,504,911	+		GFF2481	0.68	-1.7
2,504,911	+		GFF2481	0.68	-1.7
2,504,914	-		GFF2481	0.69	-1.2
2,504,959	-		GFF2481	0.74	-2.4
2,504,999	+		GFF2481	0.78	-2.0
2,505,028	+		GFF2481	0.81	-2.5
2,505,033	+		GFF2481	0.82	-2.8
2,505,036	-		GFF2481	0.82	-3.3
2,505,038	+		GFF2481	0.82	-2.0
2,505,041	-		GFF2481	0.83	-1.4
2,505,041	-		GFF2481	0.83	-1.8
2,505,043	-		GFF2481	0.83	-2.6
2,505,046	-		GFF2481	0.83	-2.5
2,505,046	-		GFF2481	0.83	-1.2
2,505,046	-		GFF2481	0.83	-2.2
2,505,060	-		GFF2481	0.85	-2.0
2,505,064	+		GFF2481	0.85	-1.6
2,505,079	+		GFF2481	0.87	-1.9
2,505,114	-				-3.1
2,505,205	+				-1.6
2,505,205	+				-1.7
2,505,213	-				-0.1
2,505,215	+				-2.2
2,505,243	+				+0.3
2,505,243	+				+0.3
2,505,243	+				+0.8
2,505,251	-				+0.5
2,505,251	-				-1.3
2,505,251	-				-1.2
2,505,272	+				-0.7
2,505,272	+				-0.2
2,505,273	-				-2.3
2,505,280	-				+0.5
2,505,280	-				-0.6
2,505,280	-				+0.3
2,505,287	-				+0.8
2,505,306	+				+0.9
2,505,306	+				-0.7
2,505,306	+				-1.9
2,505,312	+				+0.2
2,505,314	-				+1.4
2,505,314	-				-1.1
2,505,316	-				-0.1
2,505,320	-				+0.1
2,505,322	+				-0.6
2,505,322	+				+0.6
2,505,322	+				-0.4
2,505,322	+				+0.5
2,505,322	+				-2.2
2,505,322	+				-2.5
2,505,330	-				+0.3
2,505,330	-				-0.0
2,505,330	-				+0.9
2,505,385	+				+1.5
2,505,393	+				+0.2
2,505,395	-				-2.2
2,505,433	-		GFF2482	0.11	-2.4
2,505,433	-		GFF2482	0.11	-2.4
2,505,433	-		GFF2482	0.11	-0.1
2,505,433	-		GFF2482	0.11	-1.4
2,505,433	-		GFF2482	0.11	+0.8
2,505,532	+		GFF2482	0.27	-0.3
2,505,532	+		GFF2482	0.27	+1.3
2,505,540	-		GFF2482	0.28	-1.9
2,505,545	-		GFF2482	0.29	-1.4
2,505,547	-		GFF2482	0.29	+1.2
2,505,549	+		GFF2482	0.29	+0.3
2,505,557	-		GFF2482	0.31	+0.8
2,505,585	-		GFF2482	0.35	-1.6
2,505,585	-		GFF2482	0.35	-0.2
2,505,611	-		GFF2482	0.39	+0.5
2,505,613	-		GFF2482	0.40	-1.9
2,505,621	-		GFF2482	0.41	-1.4
2,505,621	-		GFF2482	0.41	+0.2
2,505,621	-		GFF2482	0.41	+0.2
2,505,621	-		GFF2482	0.41	-0.6
2,505,643	+		GFF2482	0.44	-0.5
2,505,651	-		GFF2482	0.46	+0.4
2,505,659	-		GFF2482	0.47	-0.6
2,505,673	+		GFF2482	0.49	-1.5
2,505,683	+		GFF2482	0.51	-1.3
2,505,683	+		GFF2482	0.51	-0.0
2,505,683	+		GFF2482	0.51	-1.4
2,505,691	-		GFF2482	0.52	+0.2
2,505,691	-		GFF2482	0.52	-0.6
2,505,691	-		GFF2482	0.52	+0.7
2,505,691	-		GFF2482	0.52	+0.0
2,505,691	-		GFF2482	0.52	-0.6
2,505,691	-		GFF2482	0.52	-0.6
2,505,697	-		GFF2482	0.53	+0.8
2,505,702	-		GFF2482	0.54	-2.5
2,505,702	-		GFF2482	0.54	+0.6
2,505,732	+		GFF2482	0.59	-0.6
2,505,739	+		GFF2482	0.60	-0.3
2,505,756	-		GFF2482	0.62	+0.3
2,505,805	+		GFF2482	0.70	+0.5
2,505,805	+		GFF2482	0.70	+1.0
2,505,815	+		GFF2482	0.72	+0.9
2,505,823	-		GFF2482	0.73	-1.0
2,505,823	-		GFF2482	0.73	+0.1
2,505,823	-		GFF2482	0.73	+1.3
2,505,839	+		GFF2482	0.76	+0.8
2,505,865	+		GFF2482	0.80	-0.5
2,505,865	+		GFF2482	0.80	-0.2
2,505,870	+		GFF2482	0.81	-0.1
2,505,871	+		GFF2482	0.81	-0.8
2,505,871	+		GFF2482	0.81	-0.7
2,505,871	+		GFF2482	0.81	+0.2
2,505,873	-		GFF2482	0.81	-0.3
2,505,875	+		GFF2482	0.82	-2.2
2,505,875	+		GFF2482	0.82	+0.2
2,505,914	-		GFF2482	0.88	-0.7
2,505,964	-				+1.1
2,506,008	-				-1.0
2,506,013	+				-0.4
2,506,021	-				-0.5
2,506,064	+				-0.2
2,506,095	+				+0.5
2,506,103	-		GFF2483	0.10	+0.4
2,506,146	-		GFF2483	0.16	-0.7
2,506,147	-		GFF2483	0.16	+0.4
2,506,154	+		GFF2483	0.17	-0.4
2,506,156	+		GFF2483	0.17	-0.3