Strain Fitness in Sphingobium sp. HT1-2 around GFF2382

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
2,403,399	-		GFF2380	0.67	+0.9
2,403,426	+		GFF2380	0.70	+0.8
2,403,434	-		GFF2380	0.71	-1.3
2,403,434	-		GFF2380	0.71	-1.2
2,403,436	+		GFF2380	0.72	+0.1
2,403,449	+		GFF2380	0.73	-1.1
2,403,475	+		GFF2380	0.77	+0.3
2,403,497	-		GFF2380	0.79	-0.3
2,403,505	+		GFF2380	0.80	-1.6
2,403,529	+		GFF2380	0.83	+0.6
2,403,533	-		GFF2380	0.84	-1.8
2,403,537	-		GFF2380	0.84	+0.2
2,403,537	-		GFF2380	0.84	-0.8
2,403,537	-		GFF2380	0.84	-1.7
2,403,555	+		GFF2380	0.87	-1.5
2,403,555	+		GFF2380	0.87	-1.2
2,403,561	-		GFF2380	0.87	-1.4
2,403,576	+		GFF2380	0.89	+0.5
2,403,579	+		GFF2380	0.90	-1.3
2,403,581	+				+0.8
2,403,585	+				+0.5
2,403,586	+				-1.7
2,403,587	-				-1.8
2,403,603	-				-0.3
2,403,605	-				-0.4
2,403,608	+				+1.0
2,403,614	-				+0.1
2,403,615	-				+0.6
2,403,617	+				-2.9
2,403,618	+				-1.3
2,403,653	+				-0.4
2,403,653	+				+0.8
2,403,653	+				+0.4
2,403,661	-				-1.1
2,403,661	-				-1.0
2,403,661	-				-1.3
2,403,663	+				-0.1
2,403,671	-				+0.3
2,403,671	-				+1.5
2,403,671	-				+0.2
2,403,671	-				-0.5
2,403,718	+				+1.4
2,403,718	+				+0.6
2,403,718	+				-0.8
2,403,718	+				+1.0
2,403,718	+				-1.1
2,403,726	-				-0.7
2,403,726	-				+1.1
2,403,726	-				-0.8
2,403,726	-				+0.8
2,403,726	-				-0.2
2,403,726	-				-1.0
2,403,743	+				-1.2
2,403,753	+				+0.8
2,403,753	+				+0.2
2,403,761	-		GFF2381	0.11	-1.7
2,403,768	+		GFF2381	0.12	-0.1
2,403,768	+		GFF2381	0.12	-0.3
2,403,768	+		GFF2381	0.12	+0.4
2,403,770	+		GFF2381	0.13	-0.6
2,403,770	+		GFF2381	0.13	-1.2
2,403,770	+		GFF2381	0.13	-2.3
2,403,773	-		GFF2381	0.13	-0.9
2,403,776	-		GFF2381	0.14	+0.4
2,403,778	-		GFF2381	0.14	-0.6
2,403,778	-		GFF2381	0.14	+0.4
2,403,783	-		GFF2381	0.15	-0.8
2,403,784	+		GFF2381	0.15	-0.2
2,403,786	-		GFF2381	0.15	+0.1
2,403,789	+		GFF2381	0.16	-0.9
2,403,794	+		GFF2381	0.17	+0.6
2,403,802	-		GFF2381	0.18	-0.7
2,403,815	+		GFF2381	0.20	-2.3
2,403,815	+		GFF2381	0.20	+0.4
2,403,815	+		GFF2381	0.20	-1.6
2,403,820	+		GFF2381	0.21	-0.4
2,403,820	+		GFF2381	0.21	+0.2
2,403,823	-		GFF2381	0.21	+1.3
2,403,823	-		GFF2381	0.21	-0.6
2,403,825	+		GFF2381	0.22	+0.9
2,403,828	-		GFF2381	0.22	+1.3
2,403,893	+		GFF2381	0.33	-0.2
2,403,893	+		GFF2381	0.33	-2.2
2,403,893	+		GFF2381	0.33	+0.2
2,403,904	+		GFF2381	0.35	-1.5
2,403,956	+		GFF2381	0.43	-0.6
2,403,956	+		GFF2381	0.43	+0.8
2,403,956	+		GFF2381	0.43	+0.1
2,403,957	+		GFF2381	0.44	-0.2
2,403,957	+		GFF2381	0.44	+0.0
2,403,957	+		GFF2381	0.44	+1.9
2,403,957	+		GFF2381	0.44	+0.7
2,403,957	+		GFF2381	0.44	+1.2
2,403,964	-		GFF2381	0.45	+0.6
2,403,964	-		GFF2381	0.45	-1.1
2,403,964	-		GFF2381	0.45	-1.2
2,403,964	-		GFF2381	0.45	-0.2
2,403,964	-		GFF2381	0.45	-0.8
2,403,965	-		GFF2381	0.45	-0.1
2,403,977	+		GFF2381	0.47	+1.3
2,404,029	+		GFF2381	0.55	+1.2
2,404,071	+		GFF2381	0.62	-0.1
2,404,071	+		GFF2381	0.62	+0.8
2,404,106	-		GFF2381	0.68	+0.1
2,404,113	+		GFF2381	0.69	+0.8
2,404,115	+		GFF2381	0.70	+0.1
2,404,116	-		GFF2381	0.70	-0.2
2,404,121	-		GFF2381	0.71	-0.6
2,404,121	-		GFF2381	0.71	-3.0
2,404,121	-		GFF2381	0.71	-1.3
2,404,136	+		GFF2381	0.73	+0.0
2,404,140	+		GFF2381	0.74	+0.6
2,404,144	-		GFF2381	0.74	+0.9
2,404,148	-		GFF2381	0.75	-0.2
2,404,154	-		GFF2381	0.76	-1.1
2,404,205	-		GFF2381	0.84	-2.2
2,404,214	+		GFF2381	0.86	-1.8
2,404,214	+		GFF2381	0.86	-0.5
2,404,227	+		GFF2381	0.88	+0.3
2,404,231	+		GFF2381	0.89	+0.4
2,404,233	+		GFF2381	0.89	-2.3
2,404,280	+				-1.5
2,404,291	+				-0.4
2,404,293	+				-0.4
2,404,301	-				-0.2
2,404,306	-				+0.1
2,404,311	-				-0.1
2,404,332	+				+0.2
2,404,332	+				-0.6
2,404,336	+				-0.4
2,404,371	+				+1.0
2,404,398	+				-0.4
2,404,399	-				-0.4
2,404,417	+				-0.1
2,404,425	-				-0.2
2,404,425	-				-1.1
2,404,425	-				-0.7
2,404,462	+				+1.1
2,404,490	+		GFF2382	0.11	-1.3
2,404,497	+		GFF2382	0.12	-1.9
2,404,497	+		GFF2382	0.12	-0.8
2,404,502	+		GFF2382	0.12	+0.0
2,404,513	+		GFF2382	0.13	-0.4
2,404,514	+		GFF2382	0.14	-0.1
2,404,516	-		GFF2382	0.14	-0.9
2,404,519	+		GFF2382	0.14	-0.5
2,404,521	-		GFF2382	0.14	-2.1
2,404,521	-		GFF2382	0.14	-0.4
2,404,522	-		GFF2382	0.14	-1.3
2,404,532	-		GFF2382	0.16	+0.3
2,404,537	+		GFF2382	0.16	+1.5
2,404,537	+		GFF2382	0.16	+0.3
2,404,537	+		GFF2382	0.16	+0.0
2,404,537	+		GFF2382	0.16	-0.5
2,404,537	+		GFF2382	0.16	+1.1
2,404,542	+		GFF2382	0.17	+0.2
2,404,544	-		GFF2382	0.17	+0.8
2,404,545	-		GFF2382	0.17	-0.6
2,404,545	-		GFF2382	0.17	+0.1
2,404,547	+		GFF2382	0.17	-0.7
2,404,547	+		GFF2382	0.17	+0.4
2,404,563	+		GFF2382	0.19	-0.2
2,404,571	-		GFF2382	0.20	-0.3
2,404,574	+		GFF2382	0.20	-0.4
2,404,581	-		GFF2382	0.21	-2.2
2,404,621	+		GFF2382	0.26	-0.8
2,404,627	-		GFF2382	0.26	-1.3
2,404,633	+		GFF2382	0.27	+1.0
2,404,633	+		GFF2382	0.27	-2.0
2,404,633	+		GFF2382	0.27	-0.7
2,404,633	+		GFF2382	0.27	-0.1
2,404,633	+		GFF2382	0.27	-0.2
2,404,633	+		GFF2382	0.27	-1.2
2,404,633	+		GFF2382	0.27	-1.7
2,404,633	+		GFF2382	0.27	-1.2
2,404,633	+		GFF2382	0.27	-0.1
2,404,633	+		GFF2382	0.27	-0.1
2,404,633	+		GFF2382	0.27	+0.8
2,404,641	+		GFF2382	0.28	-0.3
2,404,641	-		GFF2382	0.28	-0.2
2,404,641	-		GFF2382	0.28	-1.5
2,404,641	-		GFF2382	0.28	-2.6
2,404,641	-		GFF2382	0.28	-0.7
2,404,641	-		GFF2382	0.28	-0.7
2,404,641	-		GFF2382	0.28	+0.6
2,404,641	-		GFF2382	0.28	-1.3
2,404,641	-		GFF2382	0.28	-0.8
2,404,641	-		GFF2382	0.28	-0.1
2,404,649	-		GFF2382	0.29	-0.5
2,404,657	-		GFF2382	0.30	-0.1
2,404,692	+		GFF2382	0.33	-1.6
2,404,712	+		GFF2382	0.36	-0.3
2,404,720	-		GFF2382	0.37	+0.8
2,404,745	-		GFF2382	0.39	-0.5
2,404,752	+		GFF2382	0.40	-2.0
2,404,762	+		GFF2382	0.41	+0.7
2,404,763	+		GFF2382	0.41	-0.4
2,404,802	-		GFF2382	0.46	+0.1
2,404,824	+		GFF2382	0.48	-0.3
2,404,824	+		GFF2382	0.48	-0.3
2,404,824	+		GFF2382	0.48	+0.3
2,404,832	-		GFF2382	0.49	+0.4
2,404,837	-		GFF2382	0.50	-1.1
2,404,899	-		GFF2382	0.57	+0.4
2,404,902	+		GFF2382	0.57	-1.0
2,404,910	-		GFF2382	0.58	+0.0
2,404,910	-		GFF2382	0.58	-1.3
2,404,912	-		GFF2382	0.58	+0.6
2,404,958	+		GFF2382	0.63	+0.6
2,404,958	+		GFF2382	0.63	+0.3
2,404,965	+		GFF2382	0.64	-0.1
2,404,965	+		GFF2382	0.64	-0.7
2,404,965	+		GFF2382	0.64	+0.6
2,405,016	+		GFF2382	0.70	+0.1
2,405,016	+		GFF2382	0.70	+1.6
2,405,016	+		GFF2382	0.70	-1.2
2,405,016	+		GFF2382	0.70	-1.1
2,405,016	+		GFF2382	0.70	-0.1
2,405,016	+		GFF2382	0.70	-0.1
2,405,024	-		GFF2382	0.70	-0.6
2,405,024	-		GFF2382	0.70	+0.6
2,405,024	-		GFF2382	0.70	-1.4
2,405,031	+		GFF2382	0.71	+0.9
2,405,033	+		GFF2382	0.71	+0.1
2,405,033	+		GFF2382	0.71	-0.5
2,405,036	+		GFF2382	0.72	-2.5
2,405,036	+		GFF2382	0.72	-0.5
2,405,051	+		GFF2382	0.73	-0.2
2,405,054	-		GFF2382	0.74	+0.8
2,405,058	+		GFF2382	0.74	+0.7
2,405,059	-		GFF2382	0.74	-0.8
2,405,060	+		GFF2382	0.74	+1.3
2,405,071	-		GFF2382	0.76	-0.2
2,405,071	-		GFF2382	0.76	+0.1
2,405,071	-		GFF2382	0.76	+0.8
2,405,073	+		GFF2382	0.76	-0.2
2,405,074	+		GFF2382	0.76	-0.8
2,405,102	-		GFF2382	0.79	-0.3
2,405,107	-		GFF2382	0.80	-1.7
2,405,122	+		GFF2382	0.81	-0.1
2,405,127	+		GFF2382	0.82	-0.7
2,405,132	+		GFF2382	0.82	-0.4
2,405,132	+		GFF2382	0.82	-0.1
2,405,132	+		GFF2382	0.82	-0.6
2,405,132	+		GFF2382	0.82	+0.2
2,405,132	+		GFF2382	0.82	-0.2
2,405,132	+		GFF2382	0.82	-0.7
2,405,132	+		GFF2382	0.82	-0.6
2,405,132	+		GFF2382	0.82	+0.2
2,405,140	-		GFF2382	0.83	+0.3
2,405,140	-		GFF2382	0.83	-2.3
2,405,140	-		GFF2382	0.83	-1.1
2,405,140	-		GFF2382	0.83	+0.2
2,405,140	-		GFF2382	0.83	-0.2
2,405,140	-		GFF2382	0.83	+0.4
2,405,140	-		GFF2382	0.83	+0.0
2,405,140	-		GFF2382	0.83	-1.3
2,405,140	-		GFF2382	0.83	-0.1
2,405,140	-		GFF2382	0.83	-0.3
2,405,140	-		GFF2382	0.83	-0.6
2,405,140	-		GFF2382	0.83	-0.2
2,405,140	-		GFF2382	0.83	-0.8
2,405,152	-		GFF2382	0.85	-1.6
2,405,202	-				-0.6
2,405,214	+				-0.1
2,405,216	+				-0.2
2,405,216	+				+1.5
2,405,216	+				-0.1
2,405,224	-				-0.1
2,405,224	-				+0.8
2,405,224	-				-1.7
2,405,226	+				-1.0
2,405,245	+				+1.5
2,405,256	-				+0.1
2,405,271	+				-0.4
2,405,272	+				-0.7
2,405,272	+				-1.1
2,405,272	+				+1.4
2,405,280	-				-1.4
2,405,280	-				-1.3
2,405,282	+				-0.8
2,405,282	+				-0.6
2,405,282	+				-0.4
2,405,282	+				-0.1
2,405,282	+				+0.8
2,405,285	-				-2.6
2,405,285	-				-0.4
2,405,290	-				+1.7
2,405,290	-				-0.2
2,405,290	-				+1.6
2,405,292	+				+0.6
2,405,292	+				-1.5
2,405,322	+				+0.2
2,405,330	+				+1.4
2,405,338	-				+1.1
2,405,338	-				-0.9
2,405,338	-				+0.8
2,405,338	-				-0.5
2,405,340	+				+0.2
2,405,340	+				-2.6
2,405,345	+				-0.3
2,405,376	-				-2.4
2,405,381	-				+0.4
2,405,406	+				-0.9
2,405,412	+				-0.3
2,405,412	+				+0.0
2,405,412	+				+0.3
2,405,412	+				+1.2
2,405,420	-		GFF2383	0.20	-0.7
2,405,420	-		GFF2383	0.20	-2.0
2,405,420	-		GFF2383	0.20	-2.1
2,405,436	-		GFF2383	0.41	-1.1
2,405,436	-		GFF2383	0.41	+0.9
2,405,470	+		GFF2383	0.86	+0.2
2,405,470	+		GFF2383	0.86	-0.7
2,405,477	+				-1.2
2,405,482	+				-2.2
2,405,485	-				-0.2
2,405,485	-				-0.7
2,405,492	+				+1.2
2,405,492	+				-1.0
2,405,492	+				+0.4
2,405,492	+				+0.5
2,405,492	+				+0.6
2,405,492	+				+0.3
2,405,500	-				-0.4
2,405,500	-				+1.3
2,405,500	-				+0.7
2,405,500	-				-0.2
2,405,500	-				-0.5
2,405,500	-				+0.4
2,405,500	-				+0.7
2,405,558	-				-0.7
2,405,591	+				-0.1
2,405,606	+				-0.4
2,405,638	-				-0.2
2,405,642	+				+0.9
2,405,664	+				+0.6
2,405,694	+				-0.7
2,405,694	+				+0.6
2,405,694	+				-1.1
2,405,694	+				+0.4
2,405,694	+				+0.6
2,405,694	+				+0.7
2,405,700	-				+0.5
2,405,702	-				-0.8
2,405,702	-				+0.1
2,405,702	-				-0.4
2,405,702	-				+0.2
2,405,702	-				-0.1
2,405,702	-				+1.0
2,405,711	+				-0.4
2,405,719	-				+1.9
2,405,720	+				-0.8
2,405,721	+				+0.2
2,405,724	+				-0.2
2,405,724	+				+0.5
2,405,730	+				+0.0
2,405,734	+				+0.0
2,405,734	+				+1.7
2,405,734	+				-1.9
2,405,742	-				-0.6
2,405,742	-				-1.1
2,405,819	+				-0.2
2,405,824	+				+0.4
2,405,824	+				+0.6
2,405,824	+				-1.5
2,405,824	+				-1.9
2,405,824	+				-1.3
2,405,824	+				-1.2
2,405,824	+				+0.1
2,405,824	+				+0.4
2,405,827	-				+0.8
2,405,832	-		GFF2384	0.10	-0.7
2,405,832	-		GFF2384	0.10	+0.5
2,405,832	-		GFF2384	0.10	-0.1
2,405,832	-		GFF2384	0.10	+0.5
2,405,832	-		GFF2384	0.10	+0.5
2,405,832	-		GFF2384	0.10	-0.3
2,405,832	-		GFF2384	0.10	-2.8
2,405,858	-		GFF2384	0.13	+0.6
2,405,861	-		GFF2384	0.13	-0.8
2,405,875	+		GFF2384	0.15	+0.5
2,405,881	-		GFF2384	0.15	-0.1
2,405,883	-		GFF2384	0.16	+0.0
2,405,883	-		GFF2384	0.16	+0.7
2,405,896	+		GFF2384	0.17	+1.0
2,405,896	+		GFF2384	0.17	+0.4
2,405,896	+		GFF2384	0.17	+0.3
2,405,909	-		GFF2384	0.19	-1.2
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