Strain Fitness in Sphingobium sp. HT1-2 around GFF236

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF234 and GFF235 are separated by 34 nucleotidesGFF235 and GFF236 are separated by 372 nucleotidesGFF236 and GFF237 are separated by 72 nucleotidesGFF237 and GFF238 are separated by 169 nucleotides GFF234 - hypothetical protein, at 239,271 to 239,558 GFF234 GFF235 - Phage protein (ACLAME 827), at 239,593 to 239,883 GFF235 GFF236 - LSU ribosomal protein L10p (P0), at 240,256 to 240,771 GFF236 GFF237 - LSU ribosomal protein L7p/L12p (P1/P2), at 240,844 to 241,218 GFF237 GFF238 - putative carboxylesterase, at 241,388 to 242,809 GFF238 Position (kb) 240 241Strain fitness (log2 ratio) -2 -1 0 1 2at 239.304 kb on - strand, within GFF234at 239.304 kb on - strand, within GFF234at 239.326 kb on - strand, within GFF234at 239.344 kb on - strand, within GFF234at 239.348 kb on + strand, within GFF234at 239.356 kb on - strand, within GFF234at 239.403 kb on - strand, within GFF234at 239.450 kb on - strand, within GFF234at 239.593 kb on - strandat 239.594 kb on - strandat 239.599 kb on - strandat 239.599 kb on - strandat 239.609 kb on + strandat 239.609 kb on + strandat 239.609 kb on + strandat 239.609 kb on + strandat 239.609 kb on + strandat 239.609 kb on + strandat 239.616 kb on + strandat 239.617 kb on - strandat 239.617 kb on - strandat 239.617 kb on - strandat 239.617 kb on - strandat 239.617 kb on - strandat 239.617 kb on - strandat 239.617 kb on - strandat 239.624 kb on - strand, within GFF235at 239.624 kb on - strand, within GFF235at 239.630 kb on - strand, within GFF235at 239.635 kb on - strand, within GFF235at 239.657 kb on + strand, within GFF235at 239.665 kb on - strand, within GFF235at 239.665 kb on - strand, within GFF235at 239.668 kb on - strand, within GFF235at 239.679 kb on + strand, within GFF235at 239.681 kb on - strand, within GFF235at 239.687 kb on - strand, within GFF235at 239.699 kb on + strand, within GFF235at 239.753 kb on - strand, within GFF235at 239.761 kb on - strand, within GFF235at 239.768 kb on + strand, within GFF235at 239.768 kb on + strand, within GFF235at 239.768 kb on + strand, within GFF235at 239.770 kb on + strand, within GFF235at 239.776 kb on - strand, within GFF235at 239.778 kb on - strand, within GFF235at 239.778 kb on - strand, within GFF235at 239.800 kb on - strand, within GFF235at 239.810 kb on + strand, within GFF235at 239.810 kb on + strand, within GFF235at 239.841 kb on + strand, within GFF235at 239.841 kb on + strand, within GFF235at 239.849 kb on - strand, within GFF235at 239.849 kb on - strand, within GFF235at 239.855 kb on + strandat 239.867 kb on - strandat 239.868 kb on - strandat 239.869 kb on + strandat 239.877 kb on + strandat 239.915 kb on + strandat 239.924 kb on + strandat 239.952 kb on + strandat 239.961 kb on - strandat 241.228 kb on + strandat 241.292 kb on - strandat 241.348 kb on - strandat 241.365 kb on - strandat 241.365 kb on - strandat 241.388 kb on + strandat 241.417 kb on - strandat 241.419 kb on + strandat 241.424 kb on - strandat 241.429 kb on - strandat 241.431 kb on + strandat 241.434 kb on + strandat 241.434 kb on - strandat 241.442 kb on - strandat 241.442 kb on - strandat 241.493 kb on + strandat 241.493 kb on + strandat 241.500 kb on - strandat 241.500 kb on - strandat 241.500 kb on - strandat 241.501 kb on - strandat 241.501 kb on - strandat 241.501 kb on - strandat 241.508 kb on + strandat 241.508 kb on + strandat 241.508 kb on + strandat 241.552 kb on + strand, within GFF238at 241.553 kb on + strand, within GFF238at 241.554 kb on - strand, within GFF238at 241.561 kb on - strand, within GFF238at 241.593 kb on + strand, within GFF238at 241.600 kb on + strand, within GFF238at 241.608 kb on - strand, within GFF238at 241.616 kb on + strand, within GFF238at 241.620 kb on + strand, within GFF238at 241.628 kb on - strand, within GFF238at 241.637 kb on + strand, within GFF238at 241.647 kb on + strand, within GFF238at 241.664 kb on + strand, within GFF238at 241.701 kb on - strand, within GFF238at 241.709 kb on + strand, within GFF238at 241.722 kb on - strand, within GFF238at 241.722 kb on - strand, within GFF238at 241.743 kb on - strand, within GFF238at 241.763 kb on - strand, within GFF238

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with D-Glucose and Ammonium Sulfate
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239,304 - GFF234 0.11 -1.5
239,304 - GFF234 0.11 -2.0
239,326 - GFF234 0.19 -1.7
239,344 - GFF234 0.25 -1.3
239,348 + GFF234 0.27 -2.6
239,356 - GFF234 0.30 -1.2
239,403 - GFF234 0.46 -0.9
239,450 - GFF234 0.62 -1.8
239,593 - -2.0
239,594 - -0.6
239,599 - +0.2
239,599 - +0.7
239,609 + -1.3
239,609 + -2.3
239,609 + +1.8
239,609 + -0.8
239,609 + +0.8
239,609 + +0.5
239,616 + +0.2
239,617 - -2.2
239,617 - +1.7
239,617 - -0.0
239,617 - +0.2
239,617 - -1.6
239,617 - +0.1
239,617 - +0.2
239,624 - GFF235 0.11 -0.5
239,624 - GFF235 0.11 +1.2
239,630 - GFF235 0.13 -0.5
239,635 - GFF235 0.14 -1.3
239,657 + GFF235 0.22 +0.2
239,665 - GFF235 0.25 -1.2
239,665 - GFF235 0.25 -0.1
239,668 - GFF235 0.26 -0.7
239,679 + GFF235 0.30 +2.3
239,681 - GFF235 0.30 -1.5
239,687 - GFF235 0.32 -1.2
239,699 + GFF235 0.36 -0.9
239,753 - GFF235 0.55 -0.4
239,761 - GFF235 0.58 +0.3
239,768 + GFF235 0.60 +0.7
239,768 + GFF235 0.60 -0.1
239,768 + GFF235 0.60 -0.5
239,770 + GFF235 0.61 -1.4
239,776 - GFF235 0.63 -1.2
239,778 - GFF235 0.64 +1.3
239,778 - GFF235 0.64 +0.3
239,800 - GFF235 0.71 +0.8
239,810 + GFF235 0.75 -1.3
239,810 + GFF235 0.75 +1.4
239,841 + GFF235 0.85 +1.0
239,841 + GFF235 0.85 -0.1
239,849 - GFF235 0.88 +0.7
239,849 - GFF235 0.88 -0.9
239,855 + -1.9
239,867 - +1.3
239,868 - +0.6
239,869 + +0.8
239,877 + -0.4
239,915 + -0.2
239,924 + -2.5
239,952 + +0.4
239,961 - +0.5
241,228 + +0.6
241,292 - +0.6
241,348 - -1.0
241,365 - +1.3
241,365 - +0.6
241,388 + -1.7
241,417 - -1.1
241,419 + -0.1
241,424 - +0.1
241,429 - -0.0
241,431 + -0.1
241,434 + +1.2
241,434 - -0.8
241,442 - -0.7
241,442 - -1.3
241,493 + +0.9
241,493 + -1.0
241,500 - -0.1
241,500 - -0.9
241,500 - -0.9
241,501 - +0.3
241,501 - -0.7
241,501 - -1.9
241,508 + +0.4
241,508 + +1.4
241,508 + +1.1
241,552 + GFF238 0.12 -0.4
241,553 + GFF238 0.12 +0.6
241,554 - GFF238 0.12 -0.1
241,561 - GFF238 0.12 +0.5
241,593 + GFF238 0.14 +0.4
241,600 + GFF238 0.15 -0.6
241,608 - GFF238 0.15 +0.3
241,616 + GFF238 0.16 +1.5
241,620 + GFF238 0.16 -1.2
241,628 - GFF238 0.17 +0.5
241,637 + GFF238 0.18 -1.4
241,647 + GFF238 0.18 +1.0
241,664 + GFF238 0.19 -1.5
241,701 - GFF238 0.22 -0.9
241,709 + GFF238 0.23 +0.4
241,722 - GFF238 0.23 -0.2
241,722 - GFF238 0.23 -1.4
241,743 - GFF238 0.25 +0.3
241,763 - GFF238 0.26 -0.6

Or see this region's nucleotide sequence