Strain Fitness in Sphingobium sp. HT1-2 around GFF2319

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
2,344,422	-		GFF2317	0.15	+0.2
2,344,426	+		GFF2317	0.16	-0.9
2,344,434	-		GFF2317	0.17	-1.2
2,344,453	-		GFF2317	0.20	-0.6
2,344,471	-		GFF2317	0.22	-0.2
2,344,482	+		GFF2317	0.23	-0.4
2,344,490	-		GFF2317	0.25	+0.1
2,344,490	-		GFF2317	0.25	-0.3
2,344,490	-		GFF2317	0.25	-1.3
2,344,494	+		GFF2317	0.25	-0.2
2,344,510	+		GFF2317	0.27	-1.0
2,344,525	+		GFF2317	0.29	+0.4
2,344,525	+		GFF2317	0.29	-0.6
2,344,530	+		GFF2317	0.30	-0.8
2,344,533	-		GFF2317	0.30	-0.3
2,344,533	-		GFF2317	0.30	+0.8
2,344,563	-		GFF2317	0.34	-0.4
2,344,584	-		GFF2317	0.37	-0.6
2,344,592	-		GFF2317	0.38	-0.2
2,344,600	+		GFF2317	0.39	+0.6
2,344,600	+		GFF2317	0.39	+0.5
2,344,600	+		GFF2317	0.39	+0.1
2,344,600	+		GFF2317	0.39	+0.1
2,344,608	-		GFF2317	0.40	-0.3
2,344,608	-		GFF2317	0.40	+0.3
2,344,608	-		GFF2317	0.40	-0.1
2,344,608	-		GFF2317	0.40	+0.3
2,344,608	-		GFF2317	0.40	+0.0
2,344,608	-		GFF2317	0.40	-0.2
2,344,608	-		GFF2317	0.40	-0.3
2,344,613	+		GFF2317	0.41	+0.2
2,344,638	-		GFF2317	0.44	-0.3
2,344,657	+		GFF2317	0.47	-1.6
2,344,667	+		GFF2317	0.48	-0.4
2,344,667	+		GFF2317	0.48	+0.1
2,344,667	+		GFF2317	0.48	+1.1
2,344,667	+		GFF2317	0.48	-0.7
2,344,667	+		GFF2317	0.48	+1.0
2,344,672	+		GFF2317	0.49	-0.4
2,344,675	-		GFF2317	0.49	-0.4
2,344,675	-		GFF2317	0.49	-1.2
2,344,675	-		GFF2317	0.49	-1.1
2,344,675	-		GFF2317	0.49	-1.6
2,344,680	-		GFF2317	0.50	+0.6
2,344,680	-		GFF2317	0.50	-0.4
2,344,773	+		GFF2317	0.62	-0.3
2,344,773	+		GFF2317	0.62	+0.5
2,344,781	-		GFF2317	0.63	-0.1
2,344,810	-		GFF2317	0.67	-0.8
2,344,835	+		GFF2317	0.71	-1.5
2,344,835	+		GFF2317	0.71	-0.3
2,344,835	+		GFF2317	0.71	-2.4
2,344,837	-		GFF2317	0.71	-0.7
2,344,853	-		GFF2317	0.73	-0.9
2,344,862	-		GFF2317	0.74	-1.2
2,344,890	-		GFF2317	0.78	-0.8
2,344,904	-		GFF2317	0.80	-0.9
2,344,904	-		GFF2317	0.80	-0.2
2,344,904	-		GFF2317	0.80	+1.3
2,344,904	-		GFF2317	0.80	+0.4
2,344,906	+		GFF2317	0.80	-1.1
2,344,932	+		GFF2317	0.83	-0.4
2,344,935	-		GFF2317	0.84	+0.7
2,344,969	-		GFF2317	0.88	-0.1
2,344,978	+		GFF2317	0.90	+0.7
2,344,979	-		GFF2317	0.90	+1.6
2,344,981	-				-0.0
2,344,981	-				+0.6
2,344,981	-				-1.4
2,344,991	-				+0.1
2,345,004	+				+0.3
2,345,004	+				+0.4
2,345,051	+				-0.6
2,345,051	+				+0.4
2,345,077	-				+0.4
2,345,077	-				+0.2
2,345,166	+		GFF2318	0.21	-0.2
2,345,166	+		GFF2318	0.21	-0.0
2,345,174	-		GFF2318	0.27	+0.4
2,345,174	-		GFF2318	0.27	-0.3
2,345,189	+		GFF2318	0.39	+0.4
2,345,189	+		GFF2318	0.39	+0.8
2,345,197	-		GFF2318	0.45	+0.1
2,345,197	-		GFF2318	0.45	-0.6
2,345,220	+		GFF2318	0.62	-1.1
2,345,228	-		GFF2318	0.68	-0.6
2,345,244	+		GFF2318	0.80	-0.2
2,345,249	+		GFF2318	0.84	+0.6
2,345,252	-		GFF2318	0.86	-0.2
2,345,257	-				+0.2
2,345,319	+				-0.7
2,345,325	-				+0.9
2,345,332	+				+1.0
2,345,340	-				-2.1
2,345,347	-				-2.4
2,345,350	+				-2.1
2,345,360	+				-0.2
2,345,360	+				-0.2
2,345,360	+				-1.3
2,345,365	+				+1.0
2,345,365	+				+0.1
2,345,365	+				-0.4
2,345,368	-				-0.2
2,345,368	-				-0.1
2,345,368	-				-1.8
2,345,368	-				-2.7
2,345,368	-				+1.5
2,345,368	-				-0.2
2,345,368	-				-0.3
2,345,368	-				+0.0
2,345,368	-				-0.2
2,345,373	-				-0.9
2,345,373	-				-1.5
2,345,419	-				+0.3
2,345,452	+		GFF2319	0.11	-0.5
2,345,464	-		GFF2319	0.13	-0.1
2,345,473	+		GFF2319	0.14	+0.2
2,345,532	+		GFF2319	0.21	-1.3
2,345,534	+		GFF2319	0.22	-0.6
2,345,584	+		GFF2319	0.28	+0.1
2,345,589	+		GFF2319	0.29	+0.3
2,345,589	+		GFF2319	0.29	-0.4
2,345,589	+		GFF2319	0.29	+0.6
2,345,602	-		GFF2319	0.30	-0.4
2,345,602	-		GFF2319	0.30	+1.0
2,345,617	+		GFF2319	0.32	+0.9
2,345,628	+		GFF2319	0.33	-0.7
2,345,658	+		GFF2319	0.37	-0.5
2,345,658	+		GFF2319	0.37	-0.3
2,345,672	-		GFF2319	0.39	+0.4
2,345,702	+		GFF2319	0.43	-1.4
2,345,709	+		GFF2319	0.44	-0.8
2,345,722	+		GFF2319	0.45	+1.3
2,345,722	+		GFF2319	0.45	-0.2
2,345,722	+		GFF2319	0.45	-0.1
2,345,722	+		GFF2319	0.45	-0.1
2,345,722	+		GFF2319	0.45	-1.0
2,345,722	+		GFF2319	0.45	+1.2
2,345,723	+		GFF2319	0.45	-0.1
2,345,730	+		GFF2319	0.46	-0.5
2,345,730	+		GFF2319	0.46	-1.6
2,345,730	-		GFF2319	0.46	+2.2
2,345,735	+		GFF2319	0.47	-0.9
2,345,740	+		GFF2319	0.48	-1.9
2,345,740	+		GFF2319	0.48	-0.0
2,345,768	+		GFF2319	0.51	-0.5
2,345,768	+		GFF2319	0.51	-0.4
2,345,768	+		GFF2319	0.51	-0.8
2,345,776	-		GFF2319	0.52	+0.1
2,345,779	+		GFF2319	0.52	-0.2
2,345,787	+		GFF2319	0.53	+0.7
2,345,795	-		GFF2319	0.54	+0.6
2,345,805	+		GFF2319	0.56	-0.6
2,345,805	-		GFF2319	0.56	+0.4
2,345,823	+		GFF2319	0.58	-0.1
2,345,828	+		GFF2319	0.59	-1.3
2,345,838	-		GFF2319	0.60	-1.5
2,345,844	-		GFF2319	0.61	+0.1
2,345,849	+		GFF2319	0.61	-0.5
2,345,857	-		GFF2319	0.62	-0.0
2,345,867	-		GFF2319	0.64	-1.8
2,345,871	+		GFF2319	0.64	+0.1
2,345,895	-		GFF2319	0.67	-0.3
2,345,895	-		GFF2319	0.67	+0.5
2,345,910	+		GFF2319	0.69	-1.3
2,345,938	+		GFF2319	0.72	-0.9
2,345,981	+		GFF2319	0.78	-0.1
2,345,981	+		GFF2319	0.78	-1.0
2,345,981	+		GFF2319	0.78	-0.3
2,345,981	+		GFF2319	0.78	-0.3
2,345,989	-		GFF2319	0.79	-1.8
2,345,989	-		GFF2319	0.79	-0.9
2,345,989	-		GFF2319	0.79	-0.3
2,345,997	+		GFF2319	0.80	-1.0
2,346,003	+		GFF2319	0.81	-1.7
2,346,003	+		GFF2319	0.81	-1.2
2,346,016	+		GFF2319	0.82	-1.4
2,346,024	-		GFF2319	0.83	-0.4
2,346,030	-		GFF2319	0.84	-1.0
2,346,053	-		GFF2319	0.87	-0.2
2,346,061	+		GFF2319	0.88	-1.9
2,346,068	-		GFF2319	0.89	-1.3
2,346,069	-		GFF2319	0.89	+0.7
2,346,078	+				+0.9
2,346,144	+				+1.3
2,346,144	+				-0.6
2,346,144	+				-0.8
2,346,144	+				-0.4
2,346,152	-				-1.0
2,346,157	+				-0.2
2,346,163	+				-1.4
2,346,163	+				-0.3
2,346,169	+				-3.1
2,346,169	+				-1.7
2,346,171	-				-1.2
2,346,171	-				-0.6
2,346,177	+				+0.0
2,346,177	-				+0.3
2,346,179	+				+1.0
2,346,187	-				+0.2
2,346,191	-				-0.8
2,346,191	-				-1.5
2,346,199	-				+0.3
2,346,233	+				+0.7
2,346,238	+				-0.2
2,346,238	+				+0.4
2,346,243	+				-0.9
2,346,246	+				+0.2
2,346,246	+				-0.6
2,346,246	-				-0.1
2,346,246	-				-0.6
2,346,246	-				+1.0
2,346,246	-				-1.6
2,346,252	-				+0.4
2,346,315	+		GFF2320	0.18	+0.3
2,346,422	+				-0.0
2,346,677	+				-0.9
2,346,682	+				-0.6
2,346,682	+				+0.1
2,346,682	+				-1.7
2,346,682	+				+0.1
2,346,682	+				-0.7
2,346,682	+				+0.1
2,346,682	+				-0.0
2,346,682	+				+0.5
2,346,682	+				+0.0
2,346,682	+				+0.2
2,346,685	-				-0.7
2,346,690	-				-0.4
2,346,690	-				-1.4
2,346,690	-				+0.1
2,346,690	-				-1.3
2,346,692	+				-1.5
2,346,718	+				+0.2
2,346,720	+				+0.1
2,346,730	+				-1.8
2,346,739	+				-1.6
2,346,748	-				-1.7
2,346,750	+				+1.5
2,347,017	+		GFF2322	0.18	+0.7
2,347,017	+		GFF2322	0.18	-1.5
2,347,021	+		GFF2322	0.18	+0.8