Strain Fitness in Sphingobium sp. HT1-2 around GFF2315

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
2,341,375	-		GFF2314	0.53	-1.5
2,341,490	+		GFF2314	0.58	+1.1
2,341,491	-		GFF2314	0.58	-2.2
2,341,498	-		GFF2314	0.59	+1.4
2,341,498	-		GFF2314	0.59	-1.1
2,341,507	+		GFF2314	0.59	-0.3
2,341,509	+		GFF2314	0.59	+0.7
2,341,514	+		GFF2314	0.59	-0.2
2,341,527	-		GFF2314	0.60	-1.8
2,341,549	+		GFF2314	0.61	-0.5
2,341,583	-		GFF2314	0.63	-0.2
2,341,583	-		GFF2314	0.63	+0.2
2,341,598	+		GFF2314	0.63	+1.1
2,341,622	+		GFF2314	0.64	-0.5
2,341,635	+		GFF2314	0.65	-0.5
2,341,639	-		GFF2314	0.65	+0.2
2,341,643	-		GFF2314	0.65	+0.4
2,341,817	+		GFF2314	0.74	-0.4
2,341,824	+		GFF2314	0.74	-1.9
2,341,824	+		GFF2314	0.74	+0.1
2,341,858	-		GFF2314	0.76	-1.0
2,341,858	-		GFF2314	0.76	+0.3
2,341,898	+		GFF2314	0.78	+0.0
2,341,898	+		GFF2314	0.78	-0.6
2,341,898	+		GFF2314	0.78	-0.9
2,341,898	+		GFF2314	0.78	-1.1
2,341,898	+		GFF2314	0.78	-0.0
2,341,898	+		GFF2314	0.78	+0.6
2,341,906	-		GFF2314	0.78	-0.2
2,341,906	-		GFF2314	0.78	-0.3
2,341,958	-		GFF2314	0.81	+1.8
2,342,001	-		GFF2314	0.83	-0.3
2,342,029	-		GFF2314	0.84	-0.2
2,342,035	-		GFF2314	0.84	-0.7
2,342,057	+		GFF2314	0.85	-1.5
2,342,080	-		GFF2314	0.86	-0.7
2,342,105	-		GFF2314	0.88	+0.9
2,342,130	+		GFF2314	0.89	+1.3
2,342,173	-				+0.2
2,342,315	-				+1.5
2,342,327	-				-0.1
2,342,327	-				-1.8
2,342,357	+				+0.9
2,342,357	+				+1.2
2,342,357	+				+0.8
2,342,365	-				-0.9
2,342,373	-				-1.4
2,342,396	-				-1.1
2,342,396	-				-1.1
2,342,402	-				+0.6
2,342,409	+				+0.2
2,342,409	+				-1.3
2,342,436	-				-0.5
2,342,477	-				-0.2
2,342,511	+		GFF2315	0.10	+0.2
2,342,522	-		GFF2315	0.11	-0.0
2,342,522	-		GFF2315	0.11	+1.1
2,342,553	-		GFF2315	0.13	+1.0
2,342,563	-		GFF2315	0.14	+1.1
2,342,573	-		GFF2315	0.14	+0.3
2,342,584	+		GFF2315	0.15	+0.3
2,342,601	+		GFF2315	0.16	+0.5
2,342,633	+		GFF2315	0.19	+0.3
2,342,635	-		GFF2315	0.19	+0.9
2,342,636	+		GFF2315	0.19	+0.8
2,342,636	+		GFF2315	0.19	-0.1
2,342,653	-		GFF2315	0.20	+0.6
2,342,655	+		GFF2315	0.20	+1.4
2,342,655	+		GFF2315	0.20	-0.5
2,342,655	+		GFF2315	0.20	-1.1
2,342,655	+		GFF2315	0.20	+0.5
2,342,655	+		GFF2315	0.20	-1.2
2,342,655	+		GFF2315	0.20	-0.7
2,342,663	-		GFF2315	0.21	-0.9
2,342,663	-		GFF2315	0.21	-0.6
2,342,663	-		GFF2315	0.21	-0.4
2,342,663	-		GFF2315	0.21	-0.3
2,342,663	-		GFF2315	0.21	+0.5
2,342,663	-		GFF2315	0.21	-0.0
2,342,671	-		GFF2315	0.22	+0.2
2,342,679	+		GFF2315	0.22	-0.1
2,342,697	+		GFF2315	0.23	-0.7
2,342,703	-		GFF2315	0.24	+1.2
2,342,703	-		GFF2315	0.24	-1.1
2,342,751	+		GFF2315	0.27	+1.1
2,342,751	+		GFF2315	0.27	+0.7
2,342,751	+		GFF2315	0.27	-0.2
2,342,751	+		GFF2315	0.27	-0.3
2,342,759	-		GFF2315	0.28	+0.1
2,342,759	-		GFF2315	0.28	-0.5
2,342,759	-		GFF2315	0.28	-1.3
2,342,785	+		GFF2315	0.30	+0.3
2,342,786	-		GFF2315	0.30	-2.7
2,342,815	+		GFF2315	0.32	-1.1
2,342,859	+		GFF2315	0.35	-1.1
2,342,892	-		GFF2315	0.37	-0.5
2,342,919	-		GFF2315	0.39	-1.4
2,342,949	+		GFF2315	0.42	+0.0
2,342,957	-		GFF2315	0.42	+1.4
2,342,967	-		GFF2315	0.43	+0.3
2,342,967	-		GFF2315	0.43	+0.5
2,342,997	-		GFF2315	0.45	-0.1
2,343,014	+		GFF2315	0.46	+0.1
2,343,035	-		GFF2315	0.48	-0.9
2,343,073	+		GFF2315	0.50	+1.0
2,343,081	+		GFF2315	0.51	+0.2
2,343,081	+		GFF2315	0.51	-1.5
2,343,081	+		GFF2315	0.51	-2.3
2,343,089	-		GFF2315	0.52	+0.2
2,343,089	-		GFF2315	0.52	-1.8
2,343,105	-		GFF2315	0.53	-1.1
2,343,105	-		GFF2315	0.53	-0.4
2,343,122	-		GFF2315	0.54	+1.8
2,343,174	-		GFF2315	0.58	+0.6
2,343,280	+		GFF2315	0.65	+1.8
2,343,288	-		GFF2315	0.66	-0.4
2,343,288	-		GFF2315	0.66	+0.3
2,343,310	+		GFF2315	0.68	-0.3
2,343,328	-		GFF2315	0.69	-0.2
2,343,365	+		GFF2315	0.71	+0.8
2,343,396	+		GFF2315	0.74	+0.7
2,343,421	+		GFF2315	0.76	-0.1
2,343,429	-		GFF2315	0.76	+1.4
2,343,439	+		GFF2315	0.77	+0.3
2,343,442	-		GFF2315	0.77	+0.0
2,343,447	-		GFF2315	0.77	-0.2
2,343,447	-		GFF2315	0.77	-0.2
2,343,447	-		GFF2315	0.77	+0.4
2,343,447	-		GFF2315	0.77	+0.6
2,343,454	+		GFF2315	0.78	+0.6
2,343,478	+		GFF2315	0.80	-0.2
2,343,512	+		GFF2315	0.82	+0.1
2,343,512	+		GFF2315	0.82	-0.0
2,343,546	+		GFF2315	0.85	-0.0
2,343,549	-		GFF2315	0.85	+0.6
2,343,561	+		GFF2315	0.86	-0.6
2,343,575	+		GFF2315	0.87	-0.6
2,343,596	+		GFF2315	0.88	+1.0
2,343,596	+		GFF2315	0.88	+0.4
2,343,596	+		GFF2315	0.88	+0.2
2,343,602	-		GFF2315	0.89	-1.7
2,343,644	+				-0.4
2,343,644	+				-1.8
2,343,647	-				+0.7
2,343,724	+				+1.1
2,343,741	+				+0.5
2,343,749	-				+1.8
2,343,793	-				-0.3
2,343,793	-				-0.6
2,343,840	+				+0.9
2,343,869	-				+0.9
2,343,869	-				+1.0
2,343,869	-				-0.8
2,343,869	-				-0.5
2,343,913	+				-0.2
2,343,921	-				-0.3
2,343,938	+				+0.7
2,343,938	+				-1.7
2,343,943	+				-1.2
2,343,946	-				+0.6
2,343,964	+				-0.4
2,343,964	+				+0.1
2,344,060	-		GFF2316	0.36	-0.6
2,344,060	-		GFF2316	0.36	-0.7
2,344,060	-		GFF2316	0.36	-0.9
2,344,060	-		GFF2316	0.36	+0.2
2,344,097	+		GFF2316	0.51	+0.6
2,344,127	-		GFF2316	0.62	-0.1
2,344,206	-				-0.8
2,344,211	+				+2.9
2,344,225	+				-0.0
2,344,226	+				-0.9
2,344,234	-				+0.9
2,344,270	-				+0.3
2,344,282	+				+0.4
2,344,287	+				+0.6
2,344,290	-				-0.9
2,344,328	+				-1.6
2,344,329	-				-0.7
2,344,361	+				-0.5
2,344,421	+		GFF2317	0.15	+0.3
2,344,434	-		GFF2317	0.17	-1.1
2,344,453	-		GFF2317	0.20	-0.5
2,344,471	-		GFF2317	0.22	-0.0
2,344,482	+		GFF2317	0.23	-0.3
2,344,490	-		GFF2317	0.25	-1.2
2,344,533	-		GFF2317	0.30	-0.2
2,344,533	-		GFF2317	0.30	+1.0
2,344,533	-		GFF2317	0.30	-0.4
2,344,584	-		GFF2317	0.37	-0.5
2,344,592	-		GFF2317	0.38	-0.1
2,344,600	+		GFF2317	0.39	+0.7
2,344,600	+		GFF2317	0.39	+0.6
2,344,600	+		GFF2317	0.39	+0.2
2,344,608	-		GFF2317	0.40	-0.0
2,344,608	-		GFF2317	0.40	+0.4
2,344,608	-		GFF2317	0.40	+0.1
2,344,608	-		GFF2317	0.40	-0.1
2,344,613	+		GFF2317	0.41	+0.3
2,344,657	+		GFF2317	0.47	-1.5
2,344,667	+		GFF2317	0.48	-0.2
2,344,667	+		GFF2317	0.48	+0.3
2,344,667	+		GFF2317	0.48	+1.2
2,344,667	+		GFF2317	0.48	-0.6
2,344,672	+		GFF2317	0.49	-0.3
2,344,675	-		GFF2317	0.49	-0.3
2,344,675	-		GFF2317	0.49	-1.1
2,344,675	-		GFF2317	0.49	-1.0
2,344,680	-		GFF2317	0.50	+0.7
2,344,680	-		GFF2317	0.50	-0.3