Strain Fitness in Sphingobium sp. HT1-2 around GFF2310

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
2,334,873	-		GFF2309	0.45	-1.6
2,334,873	-		GFF2309	0.45	+0.5
2,334,873	-		GFF2309	0.45	+0.2
2,334,873	-		GFF2309	0.45	-0.5
2,334,873	-		GFF2309	0.45	-1.3
2,334,881	-		GFF2309	0.46	-0.2
2,334,909	+		GFF2309	0.48	-0.5
2,334,914	+		GFF2309	0.48	-0.6
2,334,917	-		GFF2309	0.48	+0.3
2,334,917	-		GFF2309	0.48	-1.4
2,334,929	+		GFF2309	0.49	-0.4
2,334,935	-		GFF2309	0.49	-1.1
2,334,937	-		GFF2309	0.50	+0.1
2,334,937	-		GFF2309	0.50	+0.2
2,334,942	-		GFF2309	0.50	-0.2
2,334,960	-		GFF2309	0.51	+1.3
2,334,960	-		GFF2309	0.51	-0.4
2,334,972	+		GFF2309	0.52	+0.6
2,335,002	-		GFF2309	0.54	-0.2
2,335,067	+		GFF2309	0.58	-0.4
2,335,075	-		GFF2309	0.59	-1.2
2,335,075	-		GFF2309	0.59	+0.7
2,335,228	-		GFF2309	0.69	-0.2
2,335,244	-		GFF2309	0.70	-1.3
2,335,272	-		GFF2309	0.72	-0.3
2,335,282	-		GFF2309	0.72	-1.3
2,335,364	-		GFF2309	0.78	-0.4
2,335,369	-		GFF2309	0.78	+0.3
2,335,423	-		GFF2309	0.81	-1.3
2,335,493	+		GFF2309	0.86	-0.5
2,335,496	+		GFF2309	0.86	-1.6
2,335,499	-		GFF2309	0.86	-0.4
2,335,504	-		GFF2309	0.87	-1.0
2,335,535	+		GFF2309	0.89	+0.3
2,335,543	-		GFF2309	0.89	+0.5
2,335,638	+				-0.2
2,335,669	-				-0.5
2,335,674	-				-2.2
2,335,723	-				+0.7
2,335,742	+				-0.6
2,335,747	-				-0.2
2,335,755	+				+0.9
2,335,763	-				-0.2
2,335,770	+				+1.0
2,335,777	+				+0.4
2,335,778	-				+0.8
2,335,778	-				+1.3
2,335,778	-				+0.1
2,335,785	-				-0.4
2,335,794	+				+0.1
2,335,811	-				+0.2
2,335,811	-				-1.5
2,335,813	+				-0.3
2,335,820	+				-0.6
2,335,826	+				-0.9
2,335,834	-				-0.5
2,335,876	+				-1.6
2,335,881	+				-0.2
2,335,889	-				-0.2
2,335,893	+				-1.1
2,335,894	+				+0.0
2,335,894	+				-0.3
2,335,894	+				+0.7
2,335,894	+				-0.0
2,335,894	+				+1.2
2,335,894	+				-0.7
2,335,894	+				-0.8
2,335,902	-				-1.3
2,335,902	-				-0.2
2,335,902	-				-0.6
2,335,904	+				-0.2
2,335,904	+				+0.1
2,335,910	+				+0.4
2,335,926	-				-1.6
2,335,951	+		GFF2310	0.14	+1.3
2,335,960	+		GFF2310	0.15	-0.5
2,335,960	+		GFF2310	0.15	-0.6
2,335,968	-		GFF2310	0.17	+0.4
2,335,968	-		GFF2310	0.17	+0.3
2,335,970	+		GFF2310	0.17	+0.4
2,335,978	-		GFF2310	0.18	-1.3
2,335,992	-		GFF2310	0.21	+0.4
2,335,994	+		GFF2310	0.21	+0.5
2,336,002	-		GFF2310	0.22	-0.0
2,336,002	-		GFF2310	0.22	-0.4
2,336,002	-		GFF2310	0.22	-0.4
2,336,002	-		GFF2310	0.22	-2.2
2,336,007	-		GFF2310	0.23	-0.3
2,336,007	-		GFF2310	0.23	-2.3
2,336,051	-		GFF2310	0.31	+2.0
2,336,064	-		GFF2310	0.33	+0.1
2,336,102	+		GFF2310	0.40	+1.6
2,336,169	-		GFF2310	0.51	-1.6
2,336,177	+		GFF2310	0.53	-2.2
2,336,177	+		GFF2310	0.53	-0.1
2,336,177	+		GFF2310	0.53	-0.5
2,336,177	+		GFF2310	0.53	+0.3
2,336,177	+		GFF2310	0.53	-0.8
2,336,177	+		GFF2310	0.53	-0.8
2,336,177	+		GFF2310	0.53	-0.3
2,336,177	+		GFF2310	0.53	+0.1
2,336,177	+		GFF2310	0.53	-1.2
2,336,177	+		GFF2310	0.53	-0.1
2,336,177	+		GFF2310	0.53	-0.6
2,336,177	+		GFF2310	0.53	+0.0
2,336,177	+		GFF2310	0.53	-1.0
2,336,177	+		GFF2310	0.53	-1.0
2,336,177	+		GFF2310	0.53	-0.2
2,336,177	+		GFF2310	0.53	-0.1
2,336,177	+		GFF2310	0.53	+0.2
2,336,177	+		GFF2310	0.53	-0.2
2,336,177	+		GFF2310	0.53	+1.5
2,336,177	+		GFF2310	0.53	-2.6
2,336,183	-		GFF2310	0.54	+0.4
2,336,185	-		GFF2310	0.54	+0.3
2,336,185	-		GFF2310	0.54	+0.7
2,336,185	-		GFF2310	0.54	+0.6
2,336,185	-		GFF2310	0.54	-3.8
2,336,185	-		GFF2310	0.54	+0.0
2,336,185	-		GFF2310	0.54	-1.4
2,336,185	-		GFF2310	0.54	-0.2
2,336,185	-		GFF2310	0.54	+0.5
2,336,185	-		GFF2310	0.54	-0.8
2,336,185	-		GFF2310	0.54	+0.1
2,336,185	-		GFF2310	0.54	-0.6
2,336,250	+		GFF2310	0.65	-0.9
2,336,250	+		GFF2310	0.65	-1.8
2,336,252	+		GFF2310	0.66	-1.2
2,336,252	+		GFF2310	0.66	-1.4
2,336,256	-		GFF2310	0.66	+0.2
2,336,263	+		GFF2310	0.68	-0.7
2,336,271	-		GFF2310	0.69	+0.5
2,336,281	-		GFF2310	0.71	+0.6
2,336,310	-		GFF2310	0.76	-0.6
2,336,331	+		GFF2310	0.79	-0.0
2,336,331	+		GFF2310	0.79	-0.7
2,336,381	+		GFF2310	0.88	+0.3
2,336,400	-				+0.1
2,336,535	+				-0.6
2,336,543	-				-1.2
2,336,543	-				+0.9
2,336,543	-				+0.1
2,336,543	-				+0.4
2,336,545	+				+0.1
2,336,557	-				-1.1
2,336,557	-				+0.6
2,336,568	-		GFF2311	0.13	+0.7
2,336,581	+		GFF2311	0.17	-0.9
2,336,623	+		GFF2311	0.29	-0.2
2,336,685	-		GFF2311	0.47	-1.7
2,336,722	+		GFF2311	0.57	+0.3
2,336,757	-		GFF2311	0.68	-1.5
2,336,812	+		GFF2311	0.83	-1.2
2,336,855	+				-0.7
2,336,855	+				-0.3
2,336,863	-				+0.5
2,336,863	-				+0.7
2,336,863	-				-1.2
2,336,863	-				+0.7
2,336,863	-				-0.9
2,336,875	-				-0.8
2,336,885	-				-1.0
2,336,970	+				-0.3
2,336,995	-				-1.5
2,337,000	+				-0.3
2,337,000	+				-0.6
2,337,000	+				-0.8
2,337,000	+				-0.1
2,337,000	+				-0.2
2,337,000	+				-1.5
2,337,000	+				+1.8
2,337,000	+				+0.2
2,337,000	+				-2.4
2,337,000	+				+0.7
2,337,000	+				-1.2
2,337,000	+				-0.4
2,337,008	-				+0.5
2,337,008	-				-1.1
2,337,008	-				+0.8
2,337,008	-				-0.4
2,337,008	-				+0.1
2,337,008	-				-0.1
2,337,008	-				-2.3
2,337,008	-				-1.6
2,337,008	-				+0.3
2,337,008	-				-1.0
2,337,008	-				-0.6
2,337,008	-				-2.5
2,337,008	-				+0.4
2,337,008	-				-0.0
2,337,008	-				-1.8
2,337,008	-				+2.0
2,337,038	-				+0.9
2,337,079	+				+0.4
2,337,091	+				+0.9
2,337,107	-		GFF2312	0.10	-0.1
2,337,109	-		GFF2312	0.11	+1.7
2,337,112	-		GFF2312	0.11	+0.7
2,337,114	+		GFF2312	0.11	-1.2
2,337,115	+		GFF2312	0.11	-1.2
2,337,115	+		GFF2312	0.11	+0.6
2,337,115	+		GFF2312	0.11	+0.3
2,337,117	-		GFF2312	0.11	+0.5
2,337,123	-		GFF2312	0.11	-1.2
2,337,151	-		GFF2312	0.13	-1.2
2,337,161	+		GFF2312	0.13	-1.7
2,337,161	+		GFF2312	0.13	+0.3
2,337,161	+		GFF2312	0.13	-2.4
2,337,161	+		GFF2312	0.13	-0.0
2,337,161	+		GFF2312	0.13	-0.2
2,337,161	+		GFF2312	0.13	-0.7
2,337,162	+		GFF2312	0.13	+0.6
2,337,162	+		GFF2312	0.13	+1.2
2,337,166	+		GFF2312	0.13	+0.2
2,337,166	+		GFF2312	0.13	-0.5
2,337,169	-		GFF2312	0.13	+0.1
2,337,169	-		GFF2312	0.13	+1.3
2,337,169	-		GFF2312	0.13	-0.0
2,337,169	-		GFF2312	0.13	-0.5
2,337,169	-		GFF2312	0.13	+0.3
2,337,169	-		GFF2312	0.13	-2.3
2,337,169	-		GFF2312	0.13	+1.0
2,337,169	-		GFF2312	0.13	-1.2
2,337,169	-		GFF2312	0.13	+0.3
2,337,169	-		GFF2312	0.13	-1.2
2,337,171	+		GFF2312	0.14	-1.4
2,337,171	+		GFF2312	0.14	-0.7
2,337,171	+		GFF2312	0.14	+0.3
2,337,171	+		GFF2312	0.14	-1.6
2,337,172	+		GFF2312	0.14	+0.9
2,337,174	-		GFF2312	0.14	-1.2
2,337,179	-		GFF2312	0.14	-1.3
2,337,206	-		GFF2312	0.15	-0.0
2,337,218	+		GFF2312	0.16	-0.6
2,337,218	+		GFF2312	0.16	-0.3
2,337,226	-		GFF2312	0.16	-1.8
2,337,226	-		GFF2312	0.16	-1.7
2,337,226	-		GFF2312	0.16	-0.2
2,337,228	+		GFF2312	0.16	-0.6
2,337,228	+		GFF2312	0.16	-0.3
2,337,228	+		GFF2312	0.16	+0.0
2,337,228	+		GFF2312	0.16	-0.1
2,337,228	+		GFF2312	0.16	+0.2
2,337,236	-		GFF2312	0.17	+0.9
2,337,236	-		GFF2312	0.17	-1.5
2,337,236	-		GFF2312	0.17	-1.5
2,337,236	-		GFF2312	0.17	-0.5
2,337,236	-		GFF2312	0.17	-1.3
2,337,243	-		GFF2312	0.17	-0.4
2,337,246	-		GFF2312	0.17	-1.7
2,337,254	+		GFF2312	0.18	-0.6
2,337,260	+		GFF2312	0.18	-1.6
2,337,260	+		GFF2312	0.18	-0.4
2,337,262	-		GFF2312	0.18	+2.0
2,337,268	-		GFF2312	0.18	+1.6
2,337,270	+		GFF2312	0.19	-1.7
2,337,270	+		GFF2312	0.19	-1.3
2,337,349	+		GFF2312	0.22	-0.9
2,337,349	-		GFF2312	0.22	+1.5
2,337,371	-		GFF2312	0.24	+0.6
2,337,380	+		GFF2312	0.24	+1.1
2,337,399	+		GFF2312	0.25	+0.2
2,337,409	+		GFF2312	0.25	+0.3
2,337,413	+		GFF2312	0.26	+0.2
2,337,417	-		GFF2312	0.26	+0.4
2,337,444	-		GFF2312	0.27	+0.8