Strain Fitness in Sphingobium sp. HT1-2 around GFF2288

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
2,313,313	-				+0.3
2,313,349	+				-0.7
2,313,369	+				-2.7
2,313,401	-				-1.2
2,313,408	-				-0.2
2,313,452	+				+0.2
2,313,452	+				+0.8
2,313,452	+				-1.0
2,313,452	+				+0.2
2,313,460	-				-0.3
2,313,483	+				+0.1
2,313,541	+				+0.5
2,313,549	-				-1.6
2,313,559	-				+0.5
2,313,561	+				+1.7
2,313,561	+				+0.3
2,313,563	+				+1.5
2,313,575	+				-1.5
2,313,575	+				+0.4
2,313,585	+				+0.8
2,313,585	+				-1.6
2,313,590	+				-0.3
2,313,590	+				-1.8
2,313,590	+				+1.0
2,313,593	-				+0.9
2,313,609	+				-2.4
2,313,654	+				-0.1
2,313,664	+				-1.8
2,313,697	+		GFF2287	0.11	+0.1
2,313,713	+		GFF2287	0.13	-0.6
2,313,720	+		GFF2287	0.14	-1.5
2,313,721	-		GFF2287	0.14	+0.6
2,313,721	-		GFF2287	0.14	+0.2
2,313,728	-		GFF2287	0.15	+0.3
2,313,730	+		GFF2287	0.16	-1.3
2,313,745	+		GFF2287	0.18	+0.5
2,313,753	-		GFF2287	0.19	-0.0
2,313,762	+		GFF2287	0.20	-0.9
2,313,762	+		GFF2287	0.20	+1.0
2,313,767	+		GFF2287	0.21	-1.7
2,313,770	-		GFF2287	0.21	-0.2
2,313,770	-		GFF2287	0.21	-0.0
2,313,772	+		GFF2287	0.22	-1.6
2,313,780	-		GFF2287	0.23	+0.6
2,313,780	-		GFF2287	0.23	-1.2
2,313,780	-		GFF2287	0.23	-0.4
2,313,780	-		GFF2287	0.23	-1.0
2,313,831	+		GFF2287	0.30	+0.5
2,313,846	+		GFF2287	0.32	-0.5
2,313,859	+		GFF2287	0.34	-0.3
2,313,885	-		GFF2287	0.38	-1.1
2,313,921	-		GFF2287	0.43	-0.9
2,313,937	-		GFF2287	0.46	-1.2
2,313,937	-		GFF2287	0.46	+0.1
2,313,944	-		GFF2287	0.47	+0.8
2,313,953	-		GFF2287	0.48	-1.4
2,313,964	-		GFF2287	0.49	-2.1
2,314,015	+		GFF2287	0.57	-0.0
2,314,020	-		GFF2287	0.58	+0.4
2,314,022	+		GFF2287	0.58	+1.2
2,314,022	+		GFF2287	0.58	-0.3
2,314,030	-		GFF2287	0.59	-0.6
2,314,057	-		GFF2287	0.63	-2.6
2,314,057	-		GFF2287	0.63	-1.2
2,314,068	+		GFF2287	0.64	-0.6
2,314,078	+		GFF2287	0.66	-0.3
2,314,086	-		GFF2287	0.67	+0.5
2,314,086	-		GFF2287	0.67	-0.4
2,314,111	+		GFF2287	0.71	+0.3
2,314,126	+		GFF2287	0.73	-0.9
2,314,134	-		GFF2287	0.74	+0.7
2,314,152	+		GFF2287	0.77	+0.6
2,314,162	+		GFF2287	0.78	+0.4
2,314,178	+		GFF2287	0.80	+0.4
2,314,210	-		GFF2287	0.85	-1.0
2,314,210	-		GFF2287	0.85	+1.6
2,314,214	+		GFF2287	0.86	+0.8
2,314,214	+		GFF2287	0.86	-0.6
2,314,214	+		GFF2287	0.86	-0.5
2,314,214	+		GFF2287	0.86	+0.4
2,314,214	+		GFF2287	0.86	+0.4
2,314,216	+		GFF2287	0.86	-0.3
2,314,251	+				+0.2
2,314,254	-				-0.5
2,314,278	-				+2.5
2,314,283	+				+0.6
2,314,339	+				-0.5
2,314,342	+				-0.1
2,314,342	+				-0.7
2,314,349	+				+0.8
2,314,349	+				-0.5
2,314,349	+				-1.1
2,314,357	-				-0.4
2,314,357	-				-0.2
2,314,384	+		GFF2288	0.12	-0.3
2,314,392	-		GFF2288	0.13	+0.7
2,314,392	-		GFF2288	0.13	+1.6
2,314,397	-		GFF2288	0.14	-1.3
2,314,397	-		GFF2288	0.14	-0.0
2,314,397	-		GFF2288	0.14	-0.6
2,314,397	-		GFF2288	0.14	+0.1
2,314,418	-		GFF2288	0.17	-1.0
2,314,422	-		GFF2288	0.18	+1.2
2,314,436	+		GFF2288	0.20	+0.3
2,314,455	+		GFF2288	0.23	+0.6
2,314,479	-		GFF2288	0.27	+0.2
2,314,481	+		GFF2288	0.27	-0.8
2,314,489	-		GFF2288	0.28	-0.7
2,314,491	+		GFF2288	0.29	+0.3
2,314,497	+		GFF2288	0.29	+1.1
2,314,528	+		GFF2288	0.34	-0.0
2,314,528	+		GFF2288	0.34	-1.9
2,314,528	+		GFF2288	0.34	-1.1
2,314,528	+		GFF2288	0.34	+0.7
2,314,528	+		GFF2288	0.34	-1.1
2,314,536	-		GFF2288	0.35	+0.2
2,314,536	-		GFF2288	0.35	-0.7
2,314,536	-		GFF2288	0.35	-1.3
2,314,536	-		GFF2288	0.35	-1.9
2,314,536	-		GFF2288	0.35	-0.8
2,314,536	-		GFF2288	0.35	+0.3
2,314,536	-		GFF2288	0.35	-1.1
2,314,540	-		GFF2288	0.36	+0.4
2,314,556	+		GFF2288	0.39	-1.2
2,314,577	-		GFF2288	0.42	-0.8
2,314,577	-		GFF2288	0.42	+1.0
2,314,584	+		GFF2288	0.43	-0.0
2,314,602	+		GFF2288	0.46	+0.1
2,314,618	+		GFF2288	0.48	-1.0
2,314,626	+		GFF2288	0.49	-1.7
2,314,626	-		GFF2288	0.49	+1.5
2,314,656	+		GFF2288	0.54	+0.1
2,314,657	+		GFF2288	0.54	-1.2
2,314,665	-		GFF2288	0.55	-0.9
2,314,667	+		GFF2288	0.56	-0.3
2,314,675	-		GFF2288	0.57	-1.1
2,314,677	+		GFF2288	0.57	+0.4
2,314,677	+		GFF2288	0.57	-1.5
2,314,677	+		GFF2288	0.57	+0.2
2,314,677	+		GFF2288	0.57	+1.4
2,314,677	+		GFF2288	0.57	-1.6
2,314,680	-		GFF2288	0.58	+0.6
2,314,705	+		GFF2288	0.61	-0.2
2,314,718	+		GFF2288	0.63	-0.8
2,314,726	-		GFF2288	0.65	-1.3
2,314,749	-		GFF2288	0.68	-1.3
2,314,753	-		GFF2288	0.69	-0.1
2,314,757	-		GFF2288	0.69	-0.1
2,314,832	+		GFF2288	0.81	-0.0
2,314,839	-		GFF2288	0.82	-0.2
2,314,855	+		GFF2288	0.84	+0.2
2,314,855	+		GFF2288	0.84	+0.0
2,314,871	+		GFF2288	0.87	-2.2
2,314,885	-		GFF2288	0.89	-1.2
2,314,886	+		GFF2288	0.89	-0.6
2,314,886	+		GFF2288	0.89	+0.1
2,314,886	+		GFF2288	0.89	-0.2
2,314,886	+		GFF2288	0.89	+0.5
2,314,886	+		GFF2288	0.89	+0.7
2,314,886	+		GFF2288	0.89	+0.4
2,314,894	-				-1.2
2,314,894	-				-0.9
2,314,894	-				+0.9
2,314,894	-				-0.6
2,314,894	-				-1.4
2,314,894	-				-0.7
2,314,894	-				-0.6
2,314,894	-				+0.3
2,314,895	-				-2.0
2,314,911	-				+0.9
2,314,918	+				+0.9
2,314,921	-				+0.9
2,314,938	-				-0.5
2,314,948	-				-0.3
2,314,949	+				-0.8
2,314,949	+				-1.3
2,314,957	-				+1.4
2,314,966	+				-1.3
2,314,972	-				-1.4
2,315,020	-				-0.1
2,315,046	+				+0.9
2,315,085	-				-1.2
2,315,087	-				+0.7
2,315,089	+				+0.7
2,315,089	+				-0.5
2,315,095	-				+1.2
2,315,097	-				-1.2
2,315,105	+				-1.3
2,315,127	-				-0.9
2,315,129	+				+0.0
2,315,160	+		GFF2289	0.14	-2.0
2,315,206	+		GFF2289	0.20	-1.1
2,315,214	-		GFF2289	0.21	+0.9
2,315,244	+		GFF2289	0.25	-0.2
2,315,246	+		GFF2289	0.25	-0.8
2,315,246	+		GFF2289	0.25	-0.2
2,315,249	+		GFF2289	0.26	-0.1
2,315,257	+		GFF2289	0.27	-0.5
2,315,284	+		GFF2289	0.31	-0.4
2,315,310	-		GFF2289	0.34	-1.7
2,315,312	+		GFF2289	0.34	-0.0
2,315,312	+		GFF2289	0.34	-0.1
2,315,312	+		GFF2289	0.34	+0.9
2,315,312	+		GFF2289	0.34	+0.7
2,315,312	+		GFF2289	0.34	+0.6
2,315,312	+		GFF2289	0.34	-0.0
2,315,317	+		GFF2289	0.35	+1.3
2,315,317	+		GFF2289	0.35	-0.3
2,315,320	-		GFF2289	0.36	-1.0
2,315,320	-		GFF2289	0.36	-0.3
2,315,320	-		GFF2289	0.36	-0.3
2,315,320	-		GFF2289	0.36	-0.8
2,315,325	-		GFF2289	0.36	-0.1
2,315,372	+		GFF2289	0.43	-0.1
2,315,372	+		GFF2289	0.43	-0.6
2,315,374	+		GFF2289	0.43	+0.4
2,315,374	+		GFF2289	0.43	-0.2
2,315,379	+		GFF2289	0.44	-2.4
2,315,380	-		GFF2289	0.44	-1.2
2,315,380	-		GFF2289	0.44	+0.6
2,315,384	+		GFF2289	0.44	+0.7
2,315,385	-		GFF2289	0.44	+1.4
2,315,389	+		GFF2289	0.45	-1.5
2,315,392	+		GFF2289	0.45	+1.6
2,315,402	+		GFF2289	0.47	-0.9
2,315,402	+		GFF2289	0.47	+0.4
2,315,402	+		GFF2289	0.47	-1.4
2,315,402	+		GFF2289	0.47	-0.2
2,315,402	+		GFF2289	0.47	+0.2
2,315,402	+		GFF2289	0.47	-0.8
2,315,407	+		GFF2289	0.47	-0.2
2,315,407	+		GFF2289	0.47	+0.9
2,315,410	-		GFF2289	0.48	+0.5
2,315,427	-		GFF2289	0.50	+0.5
2,315,480	+		GFF2289	0.57	+1.1
2,315,488	-		GFF2289	0.59	-0.2
2,315,505	+		GFF2289	0.61	-0.4
2,315,505	+		GFF2289	0.61	+0.5
2,315,512	-		GFF2289	0.62	+0.3
2,315,532	+		GFF2289	0.65	-0.2
2,315,540	-		GFF2289	0.66	-1.6
2,315,577	-		GFF2289	0.71	+0.6
2,315,577	-		GFF2289	0.71	-2.0
2,315,579	+		GFF2289	0.71	-1.3
2,315,587	+		GFF2289	0.72	-1.0
2,315,623	+		GFF2289	0.77	-0.4
2,315,625	+		GFF2289	0.77	+1.1
2,315,626	-		GFF2289	0.78	-0.7
2,315,626	-		GFF2289	0.78	-0.9
2,315,628	+		GFF2289	0.78	+0.7
2,315,633	+		GFF2289	0.78	-1.3
2,315,636	-		GFF2289	0.79	-0.6
2,315,636	-		GFF2289	0.79	-1.4
2,315,636	-		GFF2289	0.79	-2.2
2,315,636	-		GFF2289	0.79	+0.7
2,315,641	-		GFF2289	0.80	-0.2
2,315,694	-		GFF2289	0.87	+0.5
2,315,731	-				-1.2
2,315,736	-				-0.8
2,315,759	-				-1.3
2,315,768	+				+1.0
2,315,776	-				-0.4
2,315,776	-				+0.2
2,315,852	+				+1.4
2,315,857	+				-0.8
2,315,865	+				+0.9
2,315,865	-				-0.9
2,315,872	-				+1.5
2,315,905	+				-1.2
2,315,929	-				+0.6
2,315,948	+				-0.5
2,315,948	+				+0.8
2,315,953	+				-1.1
2,315,953	+				-0.6
2,315,953	+				-0.3