Strain Fitness in Sphingobium sp. HT1-2 around GFF2172

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
2,190,739	+				+0.2
2,190,744	+				+0.2
2,190,744	+				+0.8
2,190,744	+				-0.1
2,190,744	+				-0.3
2,190,744	+				-0.8
2,190,744	+				+0.4
2,190,752	-				-0.5
2,190,752	-				-1.2
2,190,752	-				-0.4
2,190,752	-				-0.7
2,190,758	-				-0.5
2,190,761	+				-0.3
2,190,770	+				-0.7
2,190,778	-				+0.8
2,190,778	-				+0.1
2,190,805	-				+0.6
2,190,805	-				-0.7
2,190,805	-				+0.7
2,190,805	-				+0.3
2,190,807	+				+0.4
2,190,807	+				-1.4
2,190,810	+				-0.7
2,190,810	+				-1.2
2,190,810	+				+0.3
2,190,810	-				-1.4
2,190,818	-		GFF2171	0.10	-1.6
2,190,818	-		GFF2171	0.10	-0.2
2,190,818	-		GFF2171	0.10	+0.2
2,190,818	-		GFF2171	0.10	-0.6
2,190,822	+		GFF2171	0.11	+0.2
2,190,830	-		GFF2171	0.11	+0.6
2,190,830	-		GFF2171	0.11	-1.2
2,190,838	-		GFF2171	0.12	+0.2
2,190,844	-		GFF2171	0.13	-0.3
2,190,855	+		GFF2171	0.14	-0.4
2,190,868	+		GFF2171	0.15	-1.6
2,190,876	-		GFF2171	0.16	-0.0
2,190,888	-		GFF2171	0.17	-1.2
2,190,904	+		GFF2171	0.19	-0.2
2,190,904	+		GFF2171	0.19	-1.0
2,190,912	-		GFF2171	0.19	-0.1
2,190,947	+		GFF2171	0.23	+0.5
2,190,947	+		GFF2171	0.23	-2.8
2,190,947	+		GFF2171	0.23	+0.1
2,190,948	+		GFF2171	0.23	-1.3
2,190,949	+		GFF2171	0.23	-1.6
2,190,951	-		GFF2171	0.23	-1.5
2,190,951	-		GFF2171	0.23	-0.4
2,190,957	-		GFF2171	0.24	-1.5
2,190,964	-		GFF2171	0.24	-0.7
2,190,982	+		GFF2171	0.26	-1.8
2,190,985	+		GFF2171	0.27	+1.3
2,190,993	+		GFF2171	0.27	-1.6
2,190,993	+		GFF2171	0.27	-0.3
2,190,993	-		GFF2171	0.27	+0.7
2,191,042	+		GFF2171	0.32	+1.2
2,191,042	+		GFF2171	0.32	+0.0
2,191,072	-		GFF2171	0.35	-0.4
2,191,097	+		GFF2171	0.37	+0.4
2,191,097	+		GFF2171	0.37	+0.5
2,191,105	-		GFF2171	0.38	+0.7
2,191,109	+		GFF2171	0.39	-0.1
2,191,109	+		GFF2171	0.39	-2.5
2,191,117	-		GFF2171	0.39	-0.1
2,191,118	+		GFF2171	0.39	-0.2
2,191,125	+		GFF2171	0.40	-0.7
2,191,125	+		GFF2171	0.40	-2.0
2,191,126	-		GFF2171	0.40	-1.5
2,191,126	-		GFF2171	0.40	-0.3
2,191,133	+		GFF2171	0.41	+0.6
2,191,133	+		GFF2171	0.41	+0.5
2,191,133	+		GFF2171	0.41	-1.2
2,191,133	+		GFF2171	0.41	+0.1
2,191,133	-		GFF2171	0.41	+0.5
2,191,141	-		GFF2171	0.42	+0.4
2,191,141	-		GFF2171	0.42	-0.2
2,191,152	-		GFF2171	0.43	+0.2
2,191,161	-		GFF2171	0.44	+0.9
2,191,169	-		GFF2171	0.44	+0.2
2,191,169	-		GFF2171	0.44	+0.5
2,191,212	-		GFF2171	0.49	-1.3
2,191,217	+		GFF2171	0.49	-2.2
2,191,219	+		GFF2171	0.49	-0.2
2,191,291	+		GFF2171	0.56	+0.8
2,191,292	-		GFF2171	0.56	-2.5
2,191,311	-		GFF2171	0.58	+0.6
2,191,332	-		GFF2171	0.60	-0.1
2,191,360	+		GFF2171	0.63	-0.3
2,191,397	+		GFF2171	0.67	-1.9
2,191,405	-		GFF2171	0.67	-1.1
2,191,405	-		GFF2171	0.67	-0.2
2,191,415	-		GFF2171	0.68	+0.5
2,191,426	+		GFF2171	0.69	-1.8
2,191,426	+		GFF2171	0.69	-0.8
2,191,426	+		GFF2171	0.69	-2.7
2,191,426	+		GFF2171	0.69	-0.8
2,191,426	+		GFF2171	0.69	+0.3
2,191,426	+		GFF2171	0.69	+0.5
2,191,434	-		GFF2171	0.70	-0.2
2,191,434	-		GFF2171	0.70	-0.1
2,191,434	-		GFF2171	0.70	+0.4
2,191,434	-		GFF2171	0.70	-1.8
2,191,434	-		GFF2171	0.70	+0.6
2,191,434	-		GFF2171	0.70	-0.3
2,191,440	+		GFF2171	0.71	+1.2
2,191,445	+		GFF2171	0.71	-1.5
2,191,457	+		GFF2171	0.72	-0.4
2,191,468	-		GFF2171	0.73	+1.0
2,191,468	-		GFF2171	0.73	-1.9
2,191,470	+		GFF2171	0.74	+0.3
2,191,470	+		GFF2171	0.74	-0.6
2,191,478	-		GFF2171	0.74	-0.1
2,191,478	-		GFF2171	0.74	-1.2
2,191,490	+		GFF2171	0.76	-0.9
2,191,527	+		GFF2171	0.79	+0.4
2,191,527	+		GFF2171	0.79	-1.3
2,191,527	+		GFF2171	0.79	+0.5
2,191,527	+		GFF2171	0.79	-1.2
2,191,527	+		GFF2171	0.79	+0.1
2,191,527	+		GFF2171	0.79	+0.8
2,191,527	+		GFF2171	0.79	+0.5
2,191,527	+		GFF2171	0.79	-0.7
2,191,527	+		GFF2171	0.79	-1.3
2,191,527	+		GFF2171	0.79	-0.9
2,191,527	+		GFF2171	0.79	-1.8
2,191,527	+		GFF2171	0.79	+1.0
2,191,527	+		GFF2171	0.79	+0.1
2,191,527	+		GFF2171	0.79	+0.4
2,191,527	+		GFF2171	0.79	-1.6
2,191,527	+		GFF2171	0.79	-0.2
2,191,527	+		GFF2171	0.79	-1.6
2,191,527	+		GFF2171	0.79	+1.7
2,191,527	+		GFF2171	0.79	-0.4
2,191,527	+		GFF2171	0.79	-0.7
2,191,535	-		GFF2171	0.80	+1.6
2,191,535	-		GFF2171	0.80	+0.2
2,191,535	-		GFF2171	0.80	-0.3
2,191,535	-		GFF2171	0.80	+1.0
2,191,535	-		GFF2171	0.80	-0.9
2,191,535	-		GFF2171	0.80	+0.5
2,191,535	-		GFF2171	0.80	-0.6
2,191,535	-		GFF2171	0.80	-0.1
2,191,535	-		GFF2171	0.80	+0.4
2,191,535	-		GFF2171	0.80	+1.1
2,191,535	-		GFF2171	0.80	-1.2
2,191,535	-		GFF2171	0.80	+0.7
2,191,535	-		GFF2171	0.80	-1.9
2,191,535	-		GFF2171	0.80	+0.3
2,191,535	-		GFF2171	0.80	-0.0
2,191,535	-		GFF2171	0.80	-1.2
2,191,535	-		GFF2171	0.80	-0.5
2,191,535	-		GFF2171	0.80	+0.6
2,191,535	-		GFF2171	0.80	-0.2
2,191,535	-		GFF2171	0.80	+0.6
2,191,570	+		GFF2171	0.83	+0.4
2,191,573	-		GFF2171	0.84	+1.2
2,191,575	+		GFF2171	0.84	+0.3
2,191,578	-		GFF2171	0.84	+1.0
2,191,626	-		GFF2171	0.89	-1.9
2,191,642	-				+0.0
2,191,668	+				+1.3
2,191,687	+				-1.3
2,191,689	+				-0.1
2,191,689	+				+1.4
2,191,695	-				-1.2
2,191,695	-				-1.0
2,191,700	+				-0.8
2,191,700	+				-1.6
2,191,713	-				-0.0
2,191,720	+				-1.8
2,191,726	-				+0.3
2,191,752	-				+0.1
2,191,771	+		GFF2172	0.20	+0.2
2,191,779	-		GFF2172	0.24	+0.4
2,191,779	-		GFF2172	0.24	-0.9
2,191,781	+		GFF2172	0.25	-2.0
2,191,783	+		GFF2172	0.26	+0.3
2,191,783	+		GFF2172	0.26	-2.1
2,191,791	-		GFF2172	0.31	+0.3
2,191,847	+		GFF2172	0.63	-0.1
2,191,851	-		GFF2172	0.66	-0.9
2,191,854	-		GFF2172	0.67	-2.0
2,191,854	-		GFF2172	0.67	+1.6
2,191,854	-		GFF2172	0.67	-1.2
2,191,893	-				-2.1
2,191,903	-				-1.5
2,191,918	+				+0.3
2,191,918	+				-0.1
2,191,918	+				-0.0
2,191,922	+				+0.1
2,191,935	+				-1.2
2,191,937	+				-1.2
2,191,968	-		GFF2173	0.14	+0.0
2,191,985	+		GFF2173	0.17	-0.2
2,191,988	-		GFF2173	0.18	+0.9
2,191,991	+		GFF2173	0.19	-2.0
2,192,006	+		GFF2173	0.22	-2.0
2,192,024	-		GFF2173	0.26	-0.0
2,192,029	+		GFF2173	0.27	-1.0
2,192,035	-		GFF2173	0.28	+0.5
2,192,037	-		GFF2173	0.29	+0.4
2,192,044	+		GFF2173	0.30	-0.9
2,192,044	+		GFF2173	0.30	-0.8
2,192,044	+		GFF2173	0.30	+0.7
2,192,044	+		GFF2173	0.30	-0.4
2,192,044	+		GFF2173	0.30	+0.8
2,192,052	-		GFF2173	0.32	+0.0
2,192,052	-		GFF2173	0.32	+0.2
2,192,052	-		GFF2173	0.32	-1.5
2,192,052	-		GFF2173	0.32	-0.2
2,192,052	-		GFF2173	0.32	-1.9
2,192,064	-		GFF2173	0.35	-0.9
2,192,080	+		GFF2173	0.38	+0.7
2,192,082	+		GFF2173	0.39	+1.2
2,192,082	+		GFF2173	0.39	-1.2
2,192,088	+		GFF2173	0.40	-2.4
2,192,090	-		GFF2173	0.41	-0.4
2,192,090	-		GFF2173	0.41	-0.6
2,192,162	+		GFF2173	0.57	+0.1
2,192,162	+		GFF2173	0.57	-0.2
2,192,164	+		GFF2173	0.57	+1.3
2,192,164	+		GFF2173	0.57	+0.2
2,192,164	+		GFF2173	0.57	-1.4
2,192,164	+		GFF2173	0.57	+0.7
2,192,164	+		GFF2173	0.57	+0.6
2,192,164	+		GFF2173	0.57	+0.9
2,192,164	+		GFF2173	0.57	-1.3
2,192,164	+		GFF2173	0.57	-0.1
2,192,164	+		GFF2173	0.57	-0.5
2,192,164	+		GFF2173	0.57	-0.1
2,192,169	+		GFF2173	0.58	+0.6
2,192,170	-		GFF2173	0.58	-0.2
2,192,170	-		GFF2173	0.58	-1.0
2,192,172	-		GFF2173	0.59	+0.5
2,192,172	-		GFF2173	0.59	-1.9
2,192,172	-		GFF2173	0.59	-0.4
2,192,172	-		GFF2173	0.59	+1.2
2,192,172	-		GFF2173	0.59	-0.5
2,192,172	-		GFF2173	0.59	+1.6
2,192,172	-		GFF2173	0.59	-0.8
2,192,172	-		GFF2173	0.59	-1.6
2,192,172	-		GFF2173	0.59	+0.3
2,192,172	-		GFF2173	0.59	+0.1
2,192,172	-		GFF2173	0.59	+0.5
2,192,172	-		GFF2173	0.59	-2.4
2,192,172	-		GFF2173	0.59	+0.5
2,192,174	+		GFF2173	0.59	-2.8
2,192,211	-		GFF2173	0.68	-0.3
2,192,213	+		GFF2173	0.68	+0.4
2,192,289	-		GFF2173	0.85	-0.4
2,192,297	+		GFF2173	0.87	+0.6
2,192,335	-				-1.6
2,192,347	-				-1.4
2,192,347	-				+0.9
2,192,358	-				-0.4
2,192,358	-				-1.5
2,192,358	-				-1.5
2,192,358	-				-0.3
2,192,358	-				-0.4
2,192,360	-				-1.6
2,192,367	+				-1.4
2,192,370	-				-1.9
2,192,391	+				-0.6
2,192,399	-				-0.4
2,192,408	-				-1.0
2,192,408	-				+0.6
2,192,413	-				+0.4
2,192,459	+		GFF2174	0.16	-0.3
2,192,474	-		GFF2174	0.18	-1.4
2,192,476	+		GFF2174	0.18	-0.9
2,192,525	+		GFF2174	0.25	+0.1
2,192,525	+		GFF2174	0.25	+1.8
2,192,530	+		GFF2174	0.26	+0.0
2,192,545	+		GFF2174	0.28	-0.3
2,192,549	+		GFF2174	0.28	-1.9
2,192,550	-		GFF2174	0.29	+1.0
2,192,551	+		GFF2174	0.29	-0.8
2,192,556	+		GFF2174	0.29	-0.4
2,192,557	-		GFF2174	0.30	+0.6
2,192,564	-		GFF2174	0.30	-1.6
2,192,564	-		GFF2174	0.30	-0.4
2,192,607	-		GFF2174	0.37	+2.0
2,192,631	-		GFF2174	0.40	+0.7
2,192,633	+		GFF2174	0.40	+0.4
2,192,635	+		GFF2174	0.41	+0.0
2,192,641	-		GFF2174	0.41	-0.3
2,192,648	-		GFF2174	0.42	-2.1
2,192,652	+		GFF2174	0.43	+0.7
2,192,653	-		GFF2174	0.43	-0.5
2,192,654	-		GFF2174	0.43	-0.6
2,192,676	+		GFF2174	0.46	-0.4
2,192,684	-		GFF2174	0.48	+0.7
2,192,688	+		GFF2174	0.48	-0.1
2,192,688	+		GFF2174	0.48	-1.2
2,192,775	+		GFF2174	0.60	-1.4
2,192,775	+		GFF2174	0.60	-0.2
2,192,779	-		GFF2174	0.61	-0.5
2,192,781	+		GFF2174	0.61	+0.3
2,192,783	-		GFF2174	0.62	-2.6
2,192,783	-		GFF2174	0.62	-1.1
2,192,783	-		GFF2174	0.62	-1.7
2,192,785	-		GFF2174	0.62	-0.4
2,192,790	+		GFF2174	0.63	-0.7
2,192,791	-		GFF2174	0.63	-0.4
2,192,798	-		GFF2174	0.64	-0.2
2,192,820	+		GFF2174	0.67	+0.3
2,192,834	+		GFF2174	0.69	-0.8
2,192,836	+		GFF2174	0.69	-0.4
2,192,836	+		GFF2174	0.69	-0.3
2,192,836	+		GFF2174	0.69	+0.2
2,192,837	-		GFF2174	0.69	-1.4
2,192,839	+		GFF2174	0.70	+0.6
2,192,844	-		GFF2174	0.70	-0.0
2,192,847	-		GFF2174	0.71	-0.2
2,192,857	-		GFF2174	0.72	-2.1
2,192,857	-		GFF2174	0.72	-0.8
2,192,867	+		GFF2174	0.73	+0.0
2,192,870	-		GFF2174	0.74	+0.7
2,192,875	-		GFF2174	0.75	-0.4
2,192,875	-		GFF2174	0.75	-1.8
2,192,875	-		GFF2174	0.75	-0.5
2,192,875	-		GFF2174	0.75	-1.6
2,192,875	-		GFF2174	0.75	-0.1
2,192,894	+		GFF2174	0.77	-1.3
2,192,907	-		GFF2174	0.79	+0.1