Strain Fitness in Sphingobium sp. HT1-2 around GFF2073

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
2,108,332	+		GFF2071	0.68	+0.4
2,108,380	+		GFF2071	0.78	-0.9
2,108,380	+		GFF2071	0.78	+1.1
2,108,424	-		GFF2071	0.88	+1.0
2,108,486	+				+0.4
2,108,563	+				+0.6
2,108,571	-				+0.7
2,108,597	+		GFF2072	0.11	-0.0
2,108,597	+		GFF2072	0.11	+2.1
2,108,608	+		GFF2072	0.12	+0.5
2,108,616	-		GFF2072	0.14	-0.4
2,108,640	-		GFF2072	0.17	-0.1
2,108,653	+		GFF2072	0.19	+0.1
2,108,654	+		GFF2072	0.19	+1.2
2,108,662	-		GFF2072	0.21	+0.5
2,108,664	+		GFF2072	0.21	-0.4
2,108,672	-		GFF2072	0.22	-1.0
2,108,692	+		GFF2072	0.25	-1.4
2,108,750	-		GFF2072	0.34	+0.4
2,108,761	+		GFF2072	0.36	-1.1
2,108,761	+		GFF2072	0.36	+3.0
2,108,761	+		GFF2072	0.36	+1.1
2,108,761	+		GFF2072	0.36	-0.7
2,108,761	+		GFF2072	0.36	+0.6
2,108,769	-		GFF2072	0.37	+0.2
2,108,769	-		GFF2072	0.37	+0.6
2,108,793	-		GFF2072	0.40	-0.0
2,108,818	+		GFF2072	0.44	-1.8
2,108,818	+		GFF2072	0.44	-0.2
2,108,818	+		GFF2072	0.44	+0.1
2,108,883	-		GFF2072	0.54	-1.6
2,108,897	+		GFF2072	0.56	+0.2
2,108,905	-		GFF2072	0.57	-0.5
2,108,905	-		GFF2072	0.57	+1.0
2,108,913	-		GFF2072	0.59	+0.4
2,108,979	-		GFF2072	0.69	-0.0
2,109,006	+		GFF2072	0.73	+0.0
2,109,103	+		GFF2072	0.87	+0.9
2,109,119	-		GFF2072	0.90	-0.7
2,109,131	-				-0.6
2,109,158	+				-0.1
2,109,241	+				+0.4
2,109,241	+				+0.3
2,109,241	+				+0.4
2,109,249	-				-0.6
2,109,254	-				-1.5
2,109,254	-				-2.0
2,109,287	-				-0.9
2,109,302	+				+0.0
2,109,319	-				+0.6
2,109,336	+				+1.1
2,109,336	+				+1.4
2,109,344	-				-0.1
2,109,344	-				+0.9
2,109,443	-				-0.5
2,109,451	+				+0.9
2,109,453	-				+0.2
2,109,464	+				-1.2
2,109,464	+				-0.8
2,109,470	-				+1.9
2,109,487	+				+0.5
2,109,598	+		GFF2073	0.14	+0.0
2,109,639	+		GFF2073	0.16	+1.3
2,109,669	+		GFF2073	0.18	+0.4
2,109,672	-		GFF2073	0.18	+0.3
2,109,688	+		GFF2073	0.19	+1.2
2,109,718	-		GFF2073	0.20	-1.2
2,109,744	-		GFF2073	0.22	+0.4
2,109,792	+		GFF2073	0.24	+0.7
2,109,800	-		GFF2073	0.25	+0.1
2,109,838	-		GFF2073	0.27	-0.2
2,109,842	+		GFF2073	0.27	+0.8
2,109,845	+		GFF2073	0.27	+0.3
2,109,935	+		GFF2073	0.32	+1.4
2,109,943	+		GFF2073	0.32	-0.4
2,109,943	-		GFF2073	0.32	-0.3
2,109,945	+		GFF2073	0.32	+1.1
2,109,945	+		GFF2073	0.32	+2.3
2,109,945	-		GFF2073	0.32	-0.0
2,109,951	-		GFF2073	0.33	+0.1
2,109,976	+		GFF2073	0.34	+0.7
2,109,976	+		GFF2073	0.34	-0.6
2,109,993	+		GFF2073	0.35	+0.8
2,110,014	-		GFF2073	0.36	+1.2
2,110,021	+		GFF2073	0.36	+0.9
2,110,029	-		GFF2073	0.37	+0.8
2,110,052	-		GFF2073	0.38	-0.8
2,110,069	+		GFF2073	0.39	-0.6
2,110,077	-		GFF2073	0.39	+0.1
2,110,077	-		GFF2073	0.39	+1.3
2,110,093	+		GFF2073	0.40	-0.3
2,110,093	+		GFF2073	0.40	-2.3
2,110,106	+		GFF2073	0.41	-1.6
2,110,107	+		GFF2073	0.41	+1.1
2,110,141	+		GFF2073	0.42	-1.3
2,110,145	+		GFF2073	0.43	+1.6
2,110,145	+		GFF2073	0.43	-0.9
2,110,149	-		GFF2073	0.43	-0.2
2,110,160	+		GFF2073	0.43	+0.2
2,110,163	-		GFF2073	0.44	+0.4
2,110,163	-		GFF2073	0.44	+0.4
2,110,168	-		GFF2073	0.44	-0.6
2,110,168	-		GFF2073	0.44	+0.9
2,110,172	-		GFF2073	0.44	-0.7
2,110,177	-		GFF2073	0.44	+0.9
2,110,213	-		GFF2073	0.46	-0.4
2,110,215	+		GFF2073	0.46	+1.3
2,110,215	+		GFF2073	0.46	-1.0
2,110,223	-		GFF2073	0.47	+0.0
2,110,223	-		GFF2073	0.47	+1.0
2,110,228	-		GFF2073	0.47	+0.4
2,110,234	+		GFF2073	0.47	+0.3
2,110,242	-		GFF2073	0.48	-1.1
2,110,242	-		GFF2073	0.48	+0.6
2,110,265	-		GFF2073	0.49	+0.7
2,110,276	+		GFF2073	0.50	+1.8
2,110,281	+		GFF2073	0.50	-0.1
2,110,281	+		GFF2073	0.50	-0.3
2,110,281	+		GFF2073	0.50	+0.0
2,110,281	+		GFF2073	0.50	-0.1
2,110,281	+		GFF2073	0.50	+0.5
2,110,284	-		GFF2073	0.50	+0.8
2,110,289	-		GFF2073	0.50	-0.0
2,110,312	+		GFF2073	0.51	-0.7
2,110,312	+		GFF2073	0.51	+1.6
2,110,324	+		GFF2073	0.52	-1.1
2,110,324	+		GFF2073	0.52	-0.0
2,110,342	-		GFF2073	0.53	-0.6
2,110,357	-		GFF2073	0.54	-1.3
2,110,377	-		GFF2073	0.55	-0.6
2,110,386	-		GFF2073	0.55	+1.4
2,110,407	-		GFF2073	0.56	+3.1
2,110,433	-		GFF2073	0.58	-0.4
2,110,471	+		GFF2073	0.60	-2.1
2,110,475	+		GFF2073	0.60	-0.7
2,110,475	+		GFF2073	0.60	-0.5
2,110,483	-		GFF2073	0.60	-0.2
2,110,486	+		GFF2073	0.60	+0.2
2,110,489	-		GFF2073	0.61	-1.1
2,110,492	-		GFF2073	0.61	+0.6
2,110,492	-		GFF2073	0.61	-0.6
2,110,561	-		GFF2073	0.64	+0.7
2,110,581	+		GFF2073	0.65	-0.2
2,110,608	+		GFF2073	0.67	+0.1
2,110,631	-		GFF2073	0.68	+0.4
2,110,645	+		GFF2073	0.69	-1.0
2,110,647	+		GFF2073	0.69	+0.9
2,110,652	+		GFF2073	0.69	+0.7
2,110,653	-		GFF2073	0.69	-0.4
2,110,655	+		GFF2073	0.69	-1.0
2,110,674	+		GFF2073	0.70	+0.1
2,110,700	+		GFF2073	0.72	-1.3
2,110,752	-		GFF2073	0.74	+1.2
2,110,800	+		GFF2073	0.77	+1.1
2,110,813	+		GFF2073	0.78	+0.2
2,110,813	+		GFF2073	0.78	+0.7
2,110,818	+		GFF2073	0.78	+0.6
2,110,818	+		GFF2073	0.78	-2.0
2,110,818	+		GFF2073	0.78	+0.1
2,110,821	-		GFF2073	0.78	-1.4
2,110,826	-		GFF2073	0.78	+1.3
2,110,871	-		GFF2073	0.81	-0.7
2,110,887	-		GFF2073	0.81	-1.3
2,110,894	-		GFF2073	0.82	-1.1
2,110,919	-		GFF2073	0.83	+1.4
2,110,944	-		GFF2073	0.84	+0.2
2,110,947	+		GFF2073	0.84	-0.2
2,110,955	-		GFF2073	0.85	-0.3
2,110,955	-		GFF2073	0.85	-0.6
2,110,957	+		GFF2073	0.85	+0.4
2,110,965	-		GFF2073	0.85	+0.8
2,111,034	-		GFF2073	0.89	-1.6
2,111,047	+		GFF2073	0.90	-0.1
2,111,066	+				+0.6
2,111,066	+				-1.5
2,111,066	+				-1.3
2,111,070	-				-0.6
2,111,081	+				+0.7
2,111,081	+				-0.1
2,111,118	+				+0.2
2,111,123	-				+1.4
2,111,157	-				-0.1
2,111,271	+				-0.7
2,111,277	-				+0.4
2,111,279	-				-0.0
2,111,321	-		GFF2074	0.13	-0.5
2,111,386	+		GFF2074	0.24	+0.7
2,111,390	+		GFF2074	0.25	-1.4
2,111,398	-		GFF2074	0.26	+0.3
2,111,400	+		GFF2074	0.26	-1.7
2,111,404	-		GFF2074	0.27	-0.4
2,111,437	-		GFF2074	0.32	-0.8
2,111,439	+		GFF2074	0.33	+0.4
2,111,447	-		GFF2074	0.34	-0.9
2,111,447	-		GFF2074	0.34	+0.5
2,111,477	+		GFF2074	0.39	+0.8
2,111,593	+		GFF2074	0.59	-0.9
2,111,664	+		GFF2074	0.71	+1.5
2,111,676	+		GFF2074	0.73	+0.8
2,111,698	+		GFF2074	0.76	+0.7
2,111,706	-		GFF2074	0.78	+0.1
2,111,731	-		GFF2074	0.82	+0.6
2,111,733	+		GFF2074	0.82	+0.6
2,111,744	+		GFF2074	0.84	-0.2
2,111,752	+		GFF2074	0.86	-1.3
2,111,752	-		GFF2074	0.86	-0.4
2,111,765	-		GFF2074	0.88	-0.6
2,111,765	-		GFF2074	0.88	-0.5
2,111,766	+		GFF2074	0.88	+0.5
2,111,795	+				+0.9
2,111,895	+				+1.7
2,111,903	-		GFF2075	0.10	+0.7
2,112,094	-		GFF2075	0.39	+0.1
2,112,094	-		GFF2075	0.39	+0.1
2,112,094	-		GFF2075	0.39	-1.3
2,112,103	+		GFF2075	0.41	-0.8
2,112,151	+		GFF2075	0.48	+0.6
2,112,158	+		GFF2075	0.49	-0.6
2,112,177	-		GFF2075	0.52	-0.7
2,112,204	+		GFF2075	0.56	+0.4
2,112,238	-		GFF2075	0.61	+1.6
2,112,243	-		GFF2075	0.62	-0.6