Strain Fitness in Sphingobium sp. HT1-2 around GFF2071

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
2,107,045	+		GFF2070	0.29	+0.9
2,107,045	+		GFF2070	0.29	-1.4
2,107,045	+		GFF2070	0.29	+1.4
2,107,045	+		GFF2070	0.29	+2.3
2,107,053	-		GFF2070	0.30	+0.6
2,107,054	-		GFF2070	0.30	+0.9
2,107,054	-		GFF2070	0.30	-0.2
2,107,080	+		GFF2070	0.32	+0.1
2,107,080	+		GFF2070	0.32	+0.6
2,107,093	-		GFF2070	0.33	+0.4
2,107,096	-		GFF2070	0.33	+0.4
2,107,106	-		GFF2070	0.34	-2.0
2,107,116	+		GFF2070	0.34	+0.9
2,107,116	+		GFF2070	0.34	-1.3
2,107,124	-		GFF2070	0.35	-0.4
2,107,124	-		GFF2070	0.35	-0.6
2,107,208	+		GFF2070	0.41	-1.8
2,107,235	+		GFF2070	0.43	-0.6
2,107,235	+		GFF2070	0.43	-0.9
2,107,235	+		GFF2070	0.43	-1.0
2,107,240	+		GFF2070	0.44	+1.0
2,107,240	+		GFF2070	0.44	-0.9
2,107,240	+		GFF2070	0.44	-0.2
2,107,241	+		GFF2070	0.44	+0.7
2,107,243	-		GFF2070	0.44	+0.1
2,107,243	-		GFF2070	0.44	-0.1
2,107,243	-		GFF2070	0.44	-0.1
2,107,248	-		GFF2070	0.44	+0.1
2,107,249	-		GFF2070	0.44	-0.3
2,107,269	-		GFF2070	0.46	-1.6
2,107,273	+		GFF2070	0.46	-0.2
2,107,273	+		GFF2070	0.46	-1.1
2,107,274	+		GFF2070	0.46	+0.1
2,107,281	-		GFF2070	0.47	-0.9
2,107,281	-		GFF2070	0.47	-0.2
2,107,281	-		GFF2070	0.47	-2.3
2,107,281	-		GFF2070	0.47	-0.1
2,107,281	-		GFF2070	0.47	+1.3
2,107,281	-		GFF2070	0.47	-1.6
2,107,300	-		GFF2070	0.48	+0.4
2,107,305	-		GFF2070	0.48	-1.5
2,107,333	+		GFF2070	0.50	-0.3
2,107,341	-		GFF2070	0.51	-0.4
2,107,372	+		GFF2070	0.53	+0.8
2,107,373	-		GFF2070	0.53	-0.4
2,107,389	+		GFF2070	0.55	+0.9
2,107,389	+		GFF2070	0.55	+1.3
2,107,389	+		GFF2070	0.55	-0.1
2,107,389	+		GFF2070	0.55	-0.2
2,107,389	+		GFF2070	0.55	+0.4
2,107,389	+		GFF2070	0.55	-0.1
2,107,397	-		GFF2070	0.55	-0.6
2,107,397	-		GFF2070	0.55	-0.3
2,107,397	-		GFF2070	0.55	-1.1
2,107,427	+		GFF2070	0.57	+1.3
2,107,427	+		GFF2070	0.57	-2.3
2,107,427	+		GFF2070	0.57	+0.6
2,107,427	+		GFF2070	0.57	+2.2
2,107,428	+		GFF2070	0.58	-2.4
2,107,432	+		GFF2070	0.58	-0.7
2,107,435	-		GFF2070	0.58	-0.7
2,107,461	+		GFF2070	0.60	+0.9
2,107,464	-		GFF2070	0.60	+0.6
2,107,486	-		GFF2070	0.62	-1.4
2,107,491	-		GFF2070	0.62	+0.3
2,107,502	+		GFF2070	0.63	-1.6
2,107,502	+		GFF2070	0.63	-1.2
2,107,502	+		GFF2070	0.63	+1.2
2,107,502	+		GFF2070	0.63	-0.6
2,107,502	+		GFF2070	0.63	-1.2
2,107,510	-		GFF2070	0.64	+1.1
2,107,510	-		GFF2070	0.64	-0.0
2,107,510	-		GFF2070	0.64	-0.5
2,107,549	+		GFF2070	0.67	-0.0
2,107,549	+		GFF2070	0.67	-0.3
2,107,549	+		GFF2070	0.67	-1.9
2,107,549	+		GFF2070	0.67	+0.3
2,107,558	+		GFF2070	0.67	-0.1
2,107,558	+		GFF2070	0.67	+0.9
2,107,558	+		GFF2070	0.67	-0.4
2,107,561	-		GFF2070	0.67	-0.9
2,107,566	+		GFF2070	0.68	-0.0
2,107,566	-		GFF2070	0.68	+0.2
2,107,566	-		GFF2070	0.68	-0.5
2,107,566	-		GFF2070	0.68	-1.4
2,107,566	-		GFF2070	0.68	-0.5
2,107,593	-		GFF2070	0.70	+0.9
2,107,603	+		GFF2070	0.71	+0.4
2,107,608	-		GFF2070	0.71	+0.9
2,107,622	+		GFF2070	0.72	+0.2
2,107,623	+		GFF2070	0.72	+1.2
2,107,623	-		GFF2070	0.72	+1.6
2,107,635	+		GFF2070	0.73	+0.8
2,107,635	+		GFF2070	0.73	-0.8
2,107,635	+		GFF2070	0.73	-0.8
2,107,635	+		GFF2070	0.73	+0.9
2,107,635	+		GFF2070	0.73	+0.1
2,107,635	+		GFF2070	0.73	+1.0
2,107,635	+		GFF2070	0.73	-1.5
2,107,635	+		GFF2070	0.73	-1.1
2,107,635	+		GFF2070	0.73	-1.4
2,107,643	-		GFF2070	0.73	-0.4
2,107,643	-		GFF2070	0.73	-0.9
2,107,643	-		GFF2070	0.73	-0.0
2,107,643	-		GFF2070	0.73	+0.6
2,107,643	-		GFF2070	0.73	-0.2
2,107,643	-		GFF2070	0.73	-0.0
2,107,643	-		GFF2070	0.73	-0.4
2,107,658	-		GFF2070	0.75	+0.9
2,107,663	+		GFF2070	0.75	+0.1
2,107,697	-		GFF2070	0.78	+0.2
2,107,766	+		GFF2070	0.83	-0.7
2,107,767	+		GFF2070	0.83	+0.3
2,107,779	+		GFF2070	0.84	-1.3
2,107,787	-		GFF2070	0.84	-1.0
2,107,833	-		GFF2070	0.88	-1.3
2,107,914	+				-0.2
2,107,924	+				-0.2
2,107,932	-				-0.2
2,107,932	-				+0.4
2,107,933	+				-2.2
2,107,933	+				+0.5
2,107,933	+				-2.2
2,107,934	+				-0.3
2,107,941	-				+0.1
2,107,941	-				-1.3
2,107,941	-				+0.1
2,107,941	-				-0.4
2,107,941	-				+0.8
2,107,941	-				-0.4
2,107,941	-				-2.3
2,107,984	+				-0.9
2,107,993	+				-1.0
2,107,993	+				-0.8
2,107,993	+				-0.4
2,107,993	+				-0.0
2,107,993	+				+0.7
2,107,994	+				+0.1
2,107,996	-				+0.5
2,108,001	-				-0.7
2,108,001	-				-0.2
2,108,001	-				+0.2
2,108,002	-				-0.2
2,108,020	+				-0.4
2,108,021	-				+1.9
2,108,028	+				-0.1
2,108,064	-		GFF2071	0.10	+0.5
2,108,080	+		GFF2071	0.14	-2.2
2,108,121	+		GFF2071	0.23	-0.1
2,108,129	+		GFF2071	0.24	+0.5
2,108,130	-		GFF2071	0.25	+0.7
2,108,130	-		GFF2071	0.25	-0.7
2,108,130	-		GFF2071	0.25	-0.9
2,108,130	-		GFF2071	0.25	+0.8
2,108,130	-		GFF2071	0.25	-0.6
2,108,130	-		GFF2071	0.25	-0.3
2,108,274	+		GFF2071	0.55	-2.0
2,108,282	-		GFF2071	0.57	-0.3
2,108,282	-		GFF2071	0.57	-1.9
2,108,318	-		GFF2071	0.65	-1.3
2,108,332	+		GFF2071	0.68	+0.3
2,108,332	+		GFF2071	0.68	+0.4
2,108,380	+		GFF2071	0.78	+1.0
2,108,380	+		GFF2071	0.78	-1.2
2,108,388	-		GFF2071	0.80	-0.4
2,108,416	+		GFF2071	0.86	+0.7
2,108,416	+		GFF2071	0.86	+0.5
2,108,416	+		GFF2071	0.86	+0.5
2,108,421	+		GFF2071	0.87	+0.5
2,108,424	-		GFF2071	0.88	-1.9
2,108,424	-		GFF2071	0.88	+0.9
2,108,424	-		GFF2071	0.88	-1.2
2,108,424	-		GFF2071	0.88	-0.9
2,108,424	-		GFF2071	0.88	-0.1
2,108,426	-		GFF2071	0.88	+1.4
2,108,439	-				+0.9
2,108,466	-				+0.8
2,108,486	+				+0.3
2,108,537	-				+0.1
2,108,553	-				+0.8
2,108,563	+				+0.3
2,108,563	+				+0.5
2,108,563	+				+0.7
2,108,571	-				-0.5
2,108,571	-				+0.6
2,108,573	+				-0.2
2,108,597	+		GFF2072	0.11	-0.2
2,108,597	+		GFF2072	0.11	+1.9
2,108,608	+		GFF2072	0.12	-2.0
2,108,611	-		GFF2072	0.13	+0.1
2,108,616	-		GFF2072	0.14	-0.5
2,108,653	+		GFF2072	0.19	-0.1
2,108,654	+		GFF2072	0.19	-1.8
2,108,654	+		GFF2072	0.19	-0.0
2,108,654	+		GFF2072	0.19	+1.1
2,108,658	+		GFF2072	0.20	-1.3
2,108,662	-		GFF2072	0.21	+0.0
2,108,662	-		GFF2072	0.21	+0.3
2,108,662	-		GFF2072	0.21	+0.4
2,108,664	+		GFF2072	0.21	-0.5
2,108,672	-		GFF2072	0.22	-1.2
2,108,692	+		GFF2072	0.25	-1.5
2,108,710	-		GFF2072	0.28	+0.5
2,108,750	-		GFF2072	0.34	+0.3
2,108,761	+		GFF2072	0.36	-0.3
2,108,761	+		GFF2072	0.36	-1.3
2,108,761	+		GFF2072	0.36	-0.0
2,108,761	+		GFF2072	0.36	+0.7
2,108,761	+		GFF2072	0.36	+0.9
2,108,761	+		GFF2072	0.36	+0.1
2,108,761	+		GFF2072	0.36	+0.9
2,108,761	+		GFF2072	0.36	-0.9
2,108,761	+		GFF2072	0.36	-0.3
2,108,761	+		GFF2072	0.36	+0.4
2,108,761	+		GFF2072	0.36	+0.4
2,108,766	+		GFF2072	0.36	+0.9
2,108,769	-		GFF2072	0.37	-0.3
2,108,769	-		GFF2072	0.37	-0.0
2,108,769	-		GFF2072	0.37	+1.5
2,108,769	-		GFF2072	0.37	+0.1
2,108,769	-		GFF2072	0.37	-0.3
2,108,769	-		GFF2072	0.37	-2.5
2,108,769	-		GFF2072	0.37	-0.6
2,108,793	-		GFF2072	0.40	-0.2
2,108,818	+		GFF2072	0.44	-1.9
2,108,818	+		GFF2072	0.44	-0.3
2,108,818	+		GFF2072	0.44	-1.2
2,108,818	+		GFF2072	0.44	-0.9
2,108,818	+		GFF2072	0.44	+0.3
2,108,818	+		GFF2072	0.44	-0.4
2,108,818	+		GFF2072	0.44	+0.0
2,108,826	-		GFF2072	0.45	-0.3
2,108,826	-		GFF2072	0.45	+0.7
2,108,883	-		GFF2072	0.54	-1.7
2,108,889	+		GFF2072	0.55	+1.1
2,108,897	+		GFF2072	0.56	+0.0
2,108,905	-		GFF2072	0.57	+0.4
2,108,905	-		GFF2072	0.57	-0.6
2,108,905	-		GFF2072	0.57	-0.9
2,108,905	-		GFF2072	0.57	-0.6
2,108,905	-		GFF2072	0.57	+0.8
2,108,913	-		GFF2072	0.59	+0.2
2,108,915	-		GFF2072	0.59	+0.7
2,108,969	-		GFF2072	0.67	-0.2
2,108,976	+		GFF2072	0.68	-0.9
2,108,979	-		GFF2072	0.69	-0.2
2,109,004	-		GFF2072	0.72	+1.3
2,109,006	+		GFF2072	0.73	-0.1
2,109,024	+		GFF2072	0.75	+0.3
2,109,081	+		GFF2072	0.84	-0.7
2,109,103	+		GFF2072	0.87	+0.7
2,109,103	+		GFF2072	0.87	+0.6
2,109,116	+		GFF2072	0.89	-1.9
2,109,119	-		GFF2072	0.90	-0.8
2,109,131	-				-0.7
2,109,154	+				+0.2
2,109,156	-				-1.6
2,109,158	+				-0.2
2,109,166	-				-1.0
2,109,217	+				+0.2
2,109,225	-				-0.4
2,109,225	-				-0.0
2,109,225	-				+0.7
2,109,225	-				+0.8
2,109,240	+				-0.3
2,109,241	+				-0.8
2,109,241	+				+0.3
2,109,241	+				+0.1
2,109,241	+				+0.2
2,109,241	+				-1.2
2,109,249	-				-0.7
2,109,249	-				-0.2
2,109,254	-				-1.6
2,109,254	-				-2.1
2,109,277	-				+0.2
2,109,277	-				-2.6
2,109,277	-				+1.4
2,109,287	-				-0.4
2,109,336	+				-1.2
2,109,336	+				+0.6
2,109,344	-				-0.3
2,109,344	-				+0.8
2,109,430	+				+1.6
2,109,443	-				-0.7
2,109,446	+				+0.4
2,109,451	+				-0.9
2,109,451	+				+0.8
2,109,453	-				+0.0
2,109,459	-				-0.8
2,109,459	-				-2.2
2,109,464	+				-1.4
2,109,464	+				-0.9
2,109,466	+				-0.2
2,109,470	-				+1.8
2,109,470	-				-0.7
2,109,472	-				-0.8
2,109,472	-				-1.7
2,109,472	-				+0.1
2,109,474	-				+1.2