Strain Fitness in Sphingobium sp. HT1-2 around GFF2057

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
2,093,222	-				-2.5
2,093,222	-				-0.2
2,093,232	-				-1.6
2,093,232	-				-1.3
2,093,232	-				-2.0
2,093,237	+				-1.9
2,093,247	+				-0.9
2,093,247	+				+0.2
2,093,248	+				-1.1
2,093,255	-				-1.0
2,093,260	+				-0.1
2,093,260	+				+1.7
2,093,260	+				-1.2
2,093,260	+				-1.3
2,093,263	-				-1.7
2,093,263	-				-0.9
2,093,268	-				-1.8
2,093,268	-				+0.7
2,093,268	-				-2.0
2,093,268	-				+0.6
2,093,268	-				-1.5
2,093,268	-				+0.8
2,093,268	-				+0.8
2,093,268	-				-1.3
2,093,268	-				-1.7
2,093,268	-				+0.5
2,093,273	+				+0.7
2,093,273	-				-0.3
2,093,278	-				-1.6
2,093,319	+		GFF2055	0.16	-1.9
2,093,327	-		GFF2055	0.18	-0.9
2,093,327	-		GFF2055	0.18	+0.6
2,093,327	-		GFF2055	0.18	+0.2
2,093,330	+		GFF2055	0.19	+0.9
2,093,330	+		GFF2055	0.19	-0.5
2,093,330	+		GFF2055	0.19	+0.4
2,093,330	+		GFF2055	0.19	-2.2
2,093,338	-		GFF2055	0.22	-0.3
2,093,338	-		GFF2055	0.22	-1.4
2,093,344	+		GFF2055	0.23	-1.6
2,093,365	+		GFF2055	0.29	-1.6
2,093,372	+		GFF2055	0.31	+0.2
2,093,373	-		GFF2055	0.32	-1.9
2,093,392	+		GFF2055	0.37	-0.9
2,093,392	+		GFF2055	0.37	-1.5
2,093,397	+		GFF2055	0.39	+0.3
2,093,400	-		GFF2055	0.39	-1.9
2,093,400	-		GFF2055	0.39	-0.3
2,093,414	+		GFF2055	0.43	+0.1
2,093,414	+		GFF2055	0.43	+0.6
2,093,427	+		GFF2055	0.47	-0.2
2,093,437	+		GFF2055	0.50	-0.3
2,093,465	+		GFF2055	0.58	-3.1
2,093,477	-		GFF2055	0.61	-1.9
2,093,478	-		GFF2055	0.62	-0.2
2,093,491	+		GFF2055	0.66	+0.2
2,093,499	-		GFF2055	0.68	-0.2
2,093,526	+		GFF2055	0.76	+0.8
2,093,541	-		GFF2055	0.80	+0.8
2,093,541	-		GFF2055	0.80	-0.5
2,093,545	+		GFF2055	0.81	+0.5
2,093,546	-		GFF2055	0.81	-0.5
2,093,546	-		GFF2055	0.81	-0.3
2,093,625	+				-2.1
2,093,625	+				-1.6
2,093,633	-				-2.3
2,093,644	+				-2.5
2,093,654	-				-2.5
2,093,658	+				-2.7
2,093,658	+				-1.9
2,093,666	-		GFF2056	0.11	-1.1
2,093,689	+		GFF2056	0.15	-2.2
2,093,697	-		GFF2056	0.17	-1.3
2,093,718	+		GFF2056	0.21	-2.2
2,093,718	+		GFF2056	0.21	-2.1
2,093,728	+		GFF2056	0.23	-2.5
2,093,736	-		GFF2056	0.24	-1.3
2,093,748	+		GFF2056	0.27	-2.7
2,093,748	+		GFF2056	0.27	-1.5
2,093,756	-		GFF2056	0.28	-1.7
2,093,756	-		GFF2056	0.28	-1.3
2,093,793	-		GFF2056	0.35	-2.8
2,093,802	-		GFF2056	0.37	-2.9
2,093,802	-		GFF2056	0.37	+0.2
2,093,813	+		GFF2056	0.39	-3.8
2,093,821	-		GFF2056	0.41	-2.0
2,093,833	+		GFF2056	0.43	-2.0
2,093,834	+		GFF2056	0.43	-1.9
2,093,847	-		GFF2056	0.46	-1.3
2,093,849	+		GFF2056	0.46	-1.5
2,093,864	+		GFF2056	0.49	-3.4
2,093,864	+		GFF2056	0.49	-2.9
2,093,867	-		GFF2056	0.50	-1.8
2,093,869	+		GFF2056	0.50	-2.0
2,093,869	+		GFF2056	0.50	-1.5
2,093,877	-		GFF2056	0.52	-2.2
2,093,893	+		GFF2056	0.55	-1.7
2,093,893	+		GFF2056	0.55	-3.4
2,093,893	+		GFF2056	0.55	-2.2
2,093,901	-		GFF2056	0.56	-2.3
2,093,901	-		GFF2056	0.56	-1.4
2,093,901	-		GFF2056	0.56	-1.2
2,093,903	+		GFF2056	0.57	-1.8
2,093,903	+		GFF2056	0.57	-2.4
2,093,903	+		GFF2056	0.57	-3.3
2,093,903	+		GFF2056	0.57	-2.3
2,093,903	+		GFF2056	0.57	-2.2
2,093,903	+		GFF2056	0.57	-3.8
2,093,903	+		GFF2056	0.57	-2.2
2,093,903	+		GFF2056	0.57	-2.5
2,093,903	+		GFF2056	0.57	-3.1
2,093,903	+		GFF2056	0.57	-2.9
2,093,903	+		GFF2056	0.57	-1.9
2,093,903	+		GFF2056	0.57	-1.9
2,093,903	+		GFF2056	0.57	-3.3
2,093,911	-		GFF2056	0.58	-1.9
2,093,911	-		GFF2056	0.58	-1.9
2,093,911	-		GFF2056	0.58	-1.9
2,093,911	-		GFF2056	0.58	-2.3
2,093,911	-		GFF2056	0.58	-3.2
2,093,911	-		GFF2056	0.58	-1.2
2,093,911	-		GFF2056	0.58	-1.2
2,093,911	-		GFF2056	0.58	-2.2
2,093,911	-		GFF2056	0.58	-2.3
2,093,911	-		GFF2056	0.58	-2.6
2,093,911	-		GFF2056	0.58	-2.1
2,093,911	-		GFF2056	0.58	-1.7
2,093,911	-		GFF2056	0.58	-2.5
2,093,911	-		GFF2056	0.58	-1.6
2,093,911	-		GFF2056	0.58	-1.2
2,093,911	-		GFF2056	0.58	-1.3
2,093,911	-		GFF2056	0.58	-2.8
2,093,911	-		GFF2056	0.58	-1.9
2,093,927	+		GFF2056	0.61	-2.5
2,093,930	-		GFF2056	0.62	-1.1
2,093,941	-		GFF2056	0.64	-2.5
2,093,953	-		GFF2056	0.66	-2.2
2,093,960	-		GFF2056	0.68	-1.4
2,093,965	+		GFF2056	0.69	-1.3
2,093,965	+		GFF2056	0.69	-3.0
2,093,968	-		GFF2056	0.69	-1.7
2,093,973	-		GFF2056	0.70	-1.9
2,093,973	-		GFF2056	0.70	-1.5
2,093,983	+		GFF2056	0.72	-3.6
2,093,983	-		GFF2056	0.72	-1.3
2,093,988	+		GFF2056	0.73	-3.3
2,094,021	+		GFF2056	0.80	-2.2
2,094,029	-		GFF2056	0.81	-2.6
2,094,068	+		GFF2056	0.89	-3.0
2,094,068	+		GFF2056	0.89	-2.3
2,094,068	+		GFF2056	0.89	-3.1
2,094,068	+		GFF2056	0.89	-1.7
2,094,068	+		GFF2056	0.89	-2.6
2,094,068	+		GFF2056	0.89	-1.9
2,094,076	-				-2.6
2,094,076	-				-2.4
2,094,076	-				-3.2
2,094,076	-				-3.4
2,094,076	-				-1.5
2,094,076	-				-2.9
2,094,091	-				-1.5
2,094,096	+				-2.5
2,094,096	+				-1.5
2,094,096	+				-2.8
2,094,122	-				-1.2
2,094,148	-				-1.9
2,094,165	+				+0.6
2,094,168	+				+0.1
2,094,173	+				-0.1
2,094,173	+				-0.3
2,094,181	-				-0.9
2,094,183	+				+0.5
2,094,185	+				+0.1
2,094,187	+				-1.6
2,094,195	-				-2.0
2,094,200	+				-0.4
2,094,205	+				-0.0
2,094,242	+				-1.7
2,094,253	+				-1.4
2,094,253	+				-1.3
2,094,253	+				-2.6
2,094,253	+				-3.6
2,094,253	+				-2.7
2,094,253	+				-2.4
2,094,256	-				-2.5
2,094,259	+				-2.1
2,094,259	+				-1.7
2,094,260	+				-1.9
2,094,261	-				-1.9
2,094,261	-				-1.3
2,094,261	-				-1.2
2,094,261	-				-1.3
2,094,276	-				-1.6
2,094,280	+				-1.9
2,094,288	-				-1.9
2,094,296	+				-2.7
2,094,296	+				-1.7
2,094,303	-				-1.9
2,094,309	+				-2.5
2,094,311	-				-2.3
2,094,311	-				-2.3
2,094,316	-				-2.4
2,094,325	-		GFF2057	0.11	-1.6
2,094,332	-		GFF2057	0.11	-2.2
2,094,355	+		GFF2057	0.14	-2.6
2,094,362	+		GFF2057	0.14	-3.3
2,094,363	-		GFF2057	0.15	-2.8
2,094,372	+		GFF2057	0.15	-2.5
2,094,372	+		GFF2057	0.15	-2.2
2,094,372	+		GFF2057	0.15	-1.9
2,094,372	+		GFF2057	0.15	-1.5
2,094,380	-		GFF2057	0.16	-2.2
2,094,380	-		GFF2057	0.16	-3.6
2,094,390	-		GFF2057	0.17	-0.9
2,094,396	+		GFF2057	0.18	-0.9
2,094,404	-		GFF2057	0.19	-2.5
2,094,404	-		GFF2057	0.19	-2.1
2,094,415	+		GFF2057	0.20	-2.4
2,094,415	+		GFF2057	0.20	-3.1
2,094,423	-		GFF2057	0.20	-1.5
2,094,440	-		GFF2057	0.22	-1.2
2,094,448	-		GFF2057	0.23	-1.9
2,094,466	+		GFF2057	0.25	-1.6
2,094,481	+		GFF2057	0.26	-2.5
2,094,489	-		GFF2057	0.27	-2.9
2,094,501	-		GFF2057	0.28	-2.2
2,094,519	-		GFF2057	0.30	-1.7
2,094,534	+		GFF2057	0.31	-2.9
2,094,539	+		GFF2057	0.32	-2.0
2,094,542	-		GFF2057	0.32	-3.1
2,094,542	-		GFF2057	0.32	-2.8
2,094,542	-		GFF2057	0.32	-1.5
2,094,547	-		GFF2057	0.33	-2.7
2,094,595	-		GFF2057	0.37	-3.1
2,094,600	+		GFF2057	0.38	-2.7
2,094,608	+		GFF2057	0.39	-2.9
2,094,609	+		GFF2057	0.39	-2.8
2,094,613	+		GFF2057	0.39	-3.1
2,094,613	+		GFF2057	0.39	-2.6
2,094,613	+		GFF2057	0.39	-1.8
2,094,613	+		GFF2057	0.39	-1.8
2,094,613	+		GFF2057	0.39	-2.5
2,094,615	+		GFF2057	0.39	-2.0
2,094,615	-		GFF2057	0.39	-1.4
2,094,621	-		GFF2057	0.40	-3.3
2,094,621	-		GFF2057	0.40	-1.2
2,094,621	-		GFF2057	0.40	-1.8
2,094,621	-		GFF2057	0.40	-2.2
2,094,621	-		GFF2057	0.40	-1.3
2,094,623	-		GFF2057	0.40	-1.8
2,094,630	+		GFF2057	0.41	-3.4
2,094,638	-		GFF2057	0.41	-2.1
2,094,638	-		GFF2057	0.41	-2.4
2,094,650	+		GFF2057	0.43	-2.9
2,094,650	+		GFF2057	0.43	-3.0
2,094,658	-		GFF2057	0.43	-2.0
2,094,677	-		GFF2057	0.45	-1.8
2,094,677	-		GFF2057	0.45	-2.7
2,094,679	-		GFF2057	0.45	-2.5
2,094,679	-		GFF2057	0.45	-1.9
2,094,688	-		GFF2057	0.46	-2.3
2,094,703	-		GFF2057	0.48	-2.8
2,094,707	+		GFF2057	0.48	-0.3
2,094,707	+		GFF2057	0.48	-1.5
2,094,707	+		GFF2057	0.48	-2.0
2,094,707	+		GFF2057	0.48	-1.6
2,094,707	+		GFF2057	0.48	-1.9
2,094,707	+		GFF2057	0.48	-2.8
2,094,712	+		GFF2057	0.49	-2.5
2,094,712	+		GFF2057	0.49	-1.4
2,094,712	+		GFF2057	0.49	-2.3
2,094,712	+		GFF2057	0.49	-1.7
2,094,712	+		GFF2057	0.49	-2.1
2,094,712	+		GFF2057	0.49	-2.8
2,094,712	+		GFF2057	0.49	-1.4
2,094,712	+		GFF2057	0.49	-2.5
2,094,712	+		GFF2057	0.49	-3.2
2,094,712	+		GFF2057	0.49	-3.2
2,094,715	-		GFF2057	0.49	-2.2
2,094,715	-		GFF2057	0.49	-3.0
2,094,715	-		GFF2057	0.49	-2.6
2,094,715	-		GFF2057	0.49	-1.9
2,094,715	-		GFF2057	0.49	-3.4
2,094,715	-		GFF2057	0.49	-2.5
2,094,720	-		GFF2057	0.50	-1.8
2,094,720	-		GFF2057	0.50	-2.2
2,094,720	-		GFF2057	0.50	-1.9
2,094,720	-		GFF2057	0.50	-2.2
2,094,720	-		GFF2057	0.50	-2.1
2,094,720	-		GFF2057	0.50	-2.5
2,094,720	-		GFF2057	0.50	-1.2
2,094,720	-		GFF2057	0.50	-1.6
2,094,720	-		GFF2057	0.50	-1.6
2,094,720	-		GFF2057	0.50	-1.6
2,094,720	-		GFF2057	0.50	-2.1
2,094,720	-		GFF2057	0.50	-3.7
2,094,720	-		GFF2057	0.50	-2.2
2,094,720	-		GFF2057	0.50	-2.2
2,094,720	-		GFF2057	0.50	-3.7
2,094,749	-		GFF2057	0.52	-2.4
2,094,788	-		GFF2057	0.56	-1.9
2,094,805	-		GFF2057	0.58	-3.2
2,094,806	+		GFF2057	0.58	-2.0
2,094,814	-		GFF2057	0.59	-2.6
2,094,827	-		GFF2057	0.60	-1.9
2,094,832	+		GFF2057	0.60	-2.5
2,094,832	+		GFF2057	0.60	-2.2
2,094,832	+		GFF2057	0.60	-3.4
2,094,832	+		GFF2057	0.60	-2.3
2,094,832	+		GFF2057	0.60	-1.6
2,094,832	+		GFF2057	0.60	-1.4
2,094,832	+		GFF2057	0.60	-1.9
2,094,832	+		GFF2057	0.60	-1.6
2,094,832	+		GFF2057	0.60	-3.2
2,094,832	+		GFF2057	0.60	-3.4
2,094,833	+		GFF2057	0.61	-1.3
2,094,840	-		GFF2057	0.61	-2.0
2,094,840	-		GFF2057	0.61	-1.2
2,094,840	-		GFF2057	0.61	-2.1
2,094,840	-		GFF2057	0.61	-2.1
2,094,840	-		GFF2057	0.61	-2.0
2,094,840	-		GFF2057	0.61	-3.2
2,094,840	-		GFF2057	0.61	-2.2
2,094,840	-		GFF2057	0.61	-2.1
2,094,840	-		GFF2057	0.61	-1.8
2,094,840	-		GFF2057	0.61	-2.8
2,094,846	-		GFF2057	0.62	-3.1
2,094,851	+		GFF2057	0.62	-1.9
2,094,914	-		GFF2057	0.69	-1.5
2,094,918	+		GFF2057	0.69	-2.8
2,094,945	+		GFF2057	0.72	-1.3
2,094,955	+		GFF2057	0.73	-1.3
2,094,965	+		GFF2057	0.74	-1.3
2,094,965	+		GFF2057	0.74	-2.8
2,094,965	+		GFF2057	0.74	-1.2
2,094,973	-		GFF2057	0.74	-2.5
2,094,973	-		GFF2057	0.74	-3.4
2,094,973	-		GFF2057	0.74	-1.1
2,094,975	+		GFF2057	0.75	-2.7
2,094,983	-		GFF2057	0.75	-2.2
2,094,991	+		GFF2057	0.76	-2.2
2,095,000	-		GFF2057	0.77	-2.3
2,095,057	+		GFF2057	0.83	-2.1
2,095,084	+		GFF2057	0.85	-1.6
2,095,091	+		GFF2057	0.86	-2.5
2,095,111	+		GFF2057	0.88	-3.3
2,095,114	-		GFF2057	0.88	-0.8
2,095,117	+		GFF2057	0.88	-2.7
2,095,117	+		GFF2057	0.88	-1.4
2,095,119	-		GFF2057	0.89	-3.3
2,095,128	+		GFF2057	0.90	-1.9
2,095,128	+		GFF2057	0.90	-2.7
2,095,136	-				-2.2
2,095,142	+				-2.4
2,095,143	+				-3.0
2,095,151	-				-3.5
2,095,167	+				-2.7
2,095,167	+				-3.0
2,095,175	-				-2.0
2,095,175	-				-3.3
2,095,177	-				-1.9
2,095,189	+				-1.7
2,095,190	-				-0.5
2,095,194	+				-1.9
2,095,221	-				-3.3
2,095,228	+				+1.2
2,095,236	-				-1.5
2,095,246	-				-0.6
2,095,306	-				+0.7
2,095,307	+				+0.1
2,095,307	+				+0.6
2,095,307	+				-0.4
2,095,307	+				+0.2
2,095,307	+				+0.5
2,095,307	+				-1.0
2,095,307	+				+1.0
2,095,315	-				+0.1
2,095,315	-				-1.2
2,095,315	-				-1.6
2,095,315	-				+0.1
2,095,315	-				-2.1
2,095,315	-				-0.3
2,095,322	+				-0.2
2,095,349	-				-0.2
2,095,359	+				-0.6
2,095,359	+				-0.9
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2,095,367	-				-0.2
2,095,377	+				+0.3
2,095,377	+				-0.7
2,095,380	-				+0.2
2,095,399	+				-0.9
2,095,413	+		GFF2058	0.10	-0.9
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2,096,169	-		GFF2059	0.32	-1.2
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2,096,200	-		GFF2059	0.37	-1.0