Strain Fitness in Sphingobium sp. HT1-2 around GFF1936

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,959,975	+		GFF1935	0.10	-0.9
1,959,988	-		GFF1935	0.12	-0.1
1,960,008	+		GFF1935	0.14	+0.1
1,960,008	+		GFF1935	0.14	+1.9
1,960,013	+		GFF1935	0.15	-0.9
1,960,013	+		GFF1935	0.15	+0.9
1,960,031	+		GFF1935	0.17	-0.0
1,960,039	-		GFF1935	0.18	-2.0
1,960,107	+		GFF1935	0.25	+0.2
1,960,115	-		GFF1935	0.26	-3.1
1,960,115	-		GFF1935	0.26	-0.6
1,960,116	-		GFF1935	0.27	+0.1
1,960,132	+		GFF1935	0.28	-0.0
1,960,132	+		GFF1935	0.28	+0.6
1,960,134	+		GFF1935	0.29	+0.3
1,960,140	-		GFF1935	0.29	-0.9
1,960,140	-		GFF1935	0.29	-0.4
1,960,140	-		GFF1935	0.29	-0.7
1,960,140	-		GFF1935	0.29	-0.1
1,960,140	-		GFF1935	0.29	+0.1
1,960,140	-		GFF1935	0.29	-2.0
1,960,140	-		GFF1935	0.29	+0.4
1,960,140	-		GFF1935	0.29	+0.9
1,960,142	+		GFF1935	0.29	-1.8
1,960,150	+		GFF1935	0.30	+0.4
1,960,150	-		GFF1935	0.30	+0.1
1,960,193	-		GFF1935	0.35	-1.0
1,960,193	-		GFF1935	0.35	-1.2
1,960,254	-		GFF1935	0.42	-2.2
1,960,261	+		GFF1935	0.43	+0.7
1,960,269	-		GFF1935	0.44	-0.8
1,960,269	-		GFF1935	0.44	+0.3
1,960,269	-		GFF1935	0.44	-0.2
1,960,269	-		GFF1935	0.44	-0.5
1,960,280	-		GFF1935	0.45	+0.1
1,960,291	+		GFF1935	0.46	-0.9
1,960,304	+		GFF1935	0.48	-1.2
1,960,317	-		GFF1935	0.49	+0.3
1,960,322	+		GFF1935	0.50	+0.4
1,960,340	-		GFF1935	0.52	+0.0
1,960,340	-		GFF1935	0.52	-1.9
1,960,347	-		GFF1935	0.53	+1.0
1,960,347	-		GFF1935	0.53	+0.8
1,960,374	+		GFF1935	0.56	-0.7
1,960,374	+		GFF1935	0.56	+1.2
1,960,374	+		GFF1935	0.56	+1.0
1,960,382	-		GFF1935	0.57	-0.7
1,960,382	-		GFF1935	0.57	+0.3
1,960,382	-		GFF1935	0.57	+0.8
1,960,382	-		GFF1935	0.57	+0.3
1,960,382	-		GFF1935	0.57	-0.9
1,960,385	+		GFF1935	0.57	+0.9
1,960,387	+		GFF1935	0.57	+0.3
1,960,387	-		GFF1935	0.57	-1.4
1,960,387	-		GFF1935	0.57	+0.7
1,960,393	-		GFF1935	0.58	+0.1
1,960,395	-		GFF1935	0.58	+0.5
1,960,395	-		GFF1935	0.58	-0.5
1,960,395	-		GFF1935	0.58	-1.0
1,960,405	-		GFF1935	0.59	+0.6
1,960,422	-		GFF1935	0.61	-0.5
1,960,422	-		GFF1935	0.61	+0.5
1,960,430	+		GFF1935	0.62	-0.3
1,960,435	+		GFF1935	0.63	+0.0
1,960,442	-		GFF1935	0.64	+0.6
1,960,442	-		GFF1935	0.64	-0.1
1,960,450	-		GFF1935	0.65	+0.8
1,960,455	-		GFF1935	0.65	-0.2
1,960,456	+		GFF1935	0.65	-1.8
1,960,459	+		GFF1935	0.66	+0.2
1,960,468	-		GFF1935	0.67	-0.9
1,960,477	-		GFF1935	0.68	+0.4
1,960,478	-		GFF1935	0.68	+0.3
1,960,478	-		GFF1935	0.68	+0.7
1,960,482	+		GFF1935	0.68	-1.4
1,960,482	+		GFF1935	0.68	-1.6
1,960,482	+		GFF1935	0.68	+0.2
1,960,482	+		GFF1935	0.68	+0.3
1,960,487	+		GFF1935	0.69	+0.1
1,960,487	+		GFF1935	0.69	+0.5
1,960,487	+		GFF1935	0.69	-0.0
1,960,490	-		GFF1935	0.69	+1.2
1,960,490	-		GFF1935	0.69	+1.0
1,960,495	+		GFF1935	0.70	-0.5
1,960,495	-		GFF1935	0.70	-1.8
1,960,495	-		GFF1935	0.70	+0.7
1,960,495	-		GFF1935	0.70	+0.4
1,960,495	-		GFF1935	0.70	+0.5
1,960,503	-		GFF1935	0.71	+0.1
1,960,523	-		GFF1935	0.73	-0.2
1,960,523	-		GFF1935	0.73	-0.4
1,960,568	+		GFF1935	0.78	-0.0
1,960,568	+		GFF1935	0.78	-2.2
1,960,568	+		GFF1935	0.78	-0.4
1,960,568	+		GFF1935	0.78	-0.2
1,960,576	-		GFF1935	0.79	+0.3
1,960,576	-		GFF1935	0.79	-0.9
1,960,576	-		GFF1935	0.79	-1.2
1,960,601	+		GFF1935	0.82	-0.9
1,960,601	+		GFF1935	0.82	-0.9
1,960,601	+		GFF1935	0.82	+0.3
1,960,601	+		GFF1935	0.82	+0.7
1,960,601	+		GFF1935	0.82	+0.7
1,960,601	+		GFF1935	0.82	-0.6
1,960,601	+		GFF1935	0.82	-0.5
1,960,601	+		GFF1935	0.82	+0.8
1,960,601	+		GFF1935	0.82	-0.3
1,960,601	+		GFF1935	0.82	+0.3
1,960,601	+		GFF1935	0.82	-0.1
1,960,601	+		GFF1935	0.82	-0.3
1,960,601	+		GFF1935	0.82	+0.3
1,960,601	+		GFF1935	0.82	-0.3
1,960,601	+		GFF1935	0.82	-0.5
1,960,609	-		GFF1935	0.83	+0.1
1,960,609	-		GFF1935	0.83	-1.3
1,960,609	-		GFF1935	0.83	+0.5
1,960,609	-		GFF1935	0.83	-0.0
1,960,609	-		GFF1935	0.83	+0.7
1,960,609	-		GFF1935	0.83	-1.2
1,960,609	-		GFF1935	0.83	+0.2
1,960,609	-		GFF1935	0.83	-0.3
1,960,609	-		GFF1935	0.83	+0.9
1,960,611	-		GFF1935	0.83	-0.2
1,960,622	+		GFF1935	0.84	-1.5
1,960,624	+		GFF1935	0.84	-0.4
1,960,630	-		GFF1935	0.85	-0.2
1,960,664	+		GFF1935	0.89	-0.1
1,960,666	-		GFF1935	0.89	-1.2
1,960,700	+				-1.0
1,960,700	+				-1.2
1,960,708	-				-0.7
1,960,708	-				-2.2
1,960,708	-				-1.2
1,960,716	+				-0.1
1,960,721	+				-1.0
1,960,723	-				-0.3
1,960,723	-				+0.6
1,960,759	-				-0.9
1,960,816	+				+0.3
1,960,816	+				+0.1
1,960,824	-				-0.6
1,960,832	+				-1.1
1,960,848	-				+0.8
1,960,865	+				-0.9
1,960,877	+				+1.0
1,960,877	+				-0.4
1,960,883	+				-1.3
1,960,885	-				-0.4
1,960,885	-				+0.7
1,960,888	+				-0.2
1,960,896	+				-0.8
1,960,898	+				-1.1
1,960,904	-				+0.2
1,960,916	-				+0.9
1,960,972	+				+0.5
1,960,980	-				+0.2
1,960,981	-				+0.6
1,960,981	-				-2.5
1,960,981	-				+0.2
1,960,981	-				-2.5
1,960,993	+				+0.9
1,961,117	+		GFF1936	0.12	-0.3
1,961,117	+		GFF1936	0.12	+0.4
1,961,117	+		GFF1936	0.12	+0.8
1,961,127	+		GFF1936	0.13	-0.0
1,961,132	+		GFF1936	0.14	+1.4
1,961,132	+		GFF1936	0.14	-0.6
1,961,132	+		GFF1936	0.14	+0.3
1,961,132	+		GFF1936	0.14	-0.5
1,961,135	-		GFF1936	0.14	+1.8
1,961,137	+		GFF1936	0.14	+0.2
1,961,140	-		GFF1936	0.14	+0.7
1,961,140	-		GFF1936	0.14	-0.5
1,961,140	-		GFF1936	0.14	+0.6
1,961,140	-		GFF1936	0.14	+0.8
1,961,140	-		GFF1936	0.14	+1.0
1,961,145	-		GFF1936	0.15	+0.6
1,961,150	-		GFF1936	0.15	+0.5
1,961,165	-		GFF1936	0.16	-0.4
1,961,192	-		GFF1936	0.19	-1.5
1,961,220	-		GFF1936	0.21	-0.1
1,961,241	-		GFF1936	0.23	+0.3
1,961,247	+		GFF1936	0.24	-1.2
1,961,268	+		GFF1936	0.25	-1.1
1,961,270	-		GFF1936	0.26	-1.2
1,961,275	+		GFF1936	0.26	+0.7
1,961,300	+		GFF1936	0.28	+0.8
1,961,301	+		GFF1936	0.28	-0.5
1,961,336	+		GFF1936	0.31	+0.7
1,961,336	+		GFF1936	0.31	+0.9
1,961,336	+		GFF1936	0.31	-0.6
1,961,336	+		GFF1936	0.31	+0.9
1,961,344	-		GFF1936	0.32	+1.0
1,961,344	-		GFF1936	0.32	-0.0
1,961,346	-		GFF1936	0.32	-1.9
1,961,356	-		GFF1936	0.33	+0.9
1,961,360	+		GFF1936	0.33	+0.7
1,961,368	-		GFF1936	0.34	+0.5
1,961,393	+		GFF1936	0.36	-1.5
1,961,409	-		GFF1936	0.38	-1.8
1,961,417	-		GFF1936	0.38	-3.1
1,961,462	+		GFF1936	0.42	-0.4
1,961,462	+		GFF1936	0.42	+1.3
1,961,462	+		GFF1936	0.42	-0.0
1,961,469	-		GFF1936	0.43	-0.5
1,961,470	-		GFF1936	0.43	-1.6
1,961,470	-		GFF1936	0.43	+0.2
1,961,470	-		GFF1936	0.43	+0.1
1,961,472	+		GFF1936	0.43	+0.8
1,961,472	+		GFF1936	0.43	-1.0
1,961,472	+		GFF1936	0.43	+1.4
1,961,472	+		GFF1936	0.43	-1.5
1,961,480	-		GFF1936	0.44	-0.2
1,961,480	-		GFF1936	0.44	+1.2
1,961,480	-		GFF1936	0.44	-0.5
1,961,480	-		GFF1936	0.44	+1.0
1,961,480	-		GFF1936	0.44	-1.9
1,961,480	-		GFF1936	0.44	+0.1
1,961,482	+		GFF1936	0.44	-1.3
1,961,490	-		GFF1936	0.45	-0.4
1,961,492	+		GFF1936	0.45	+0.2
1,961,494	+		GFF1936	0.45	+1.0
1,961,520	-		GFF1936	0.47	-0.3
1,961,547	-		GFF1936	0.50	-0.3
1,961,561	-		GFF1936	0.51	-0.2
1,961,581	-		GFF1936	0.53	-1.5
1,961,586	-		GFF1936	0.53	-0.3
1,961,627	+		GFF1936	0.57	-1.4
1,961,642	+		GFF1936	0.58	+0.2
1,961,650	-		GFF1936	0.59	+0.0
1,961,652	-		GFF1936	0.59	+0.3
1,961,675	-		GFF1936	0.61	-0.7
1,961,677	+		GFF1936	0.61	+1.2
1,961,677	+		GFF1936	0.61	+0.8
1,961,678	-		GFF1936	0.61	+0.9
1,961,688	+		GFF1936	0.62	-2.2
1,961,690	-		GFF1936	0.62	-1.1
1,961,691	-		GFF1936	0.62	+0.3
1,961,707	+		GFF1936	0.64	-0.1
1,961,708	+		GFF1936	0.64	+0.1
1,961,719	-		GFF1936	0.65	+0.6
1,961,721	+		GFF1936	0.65	-1.6
1,961,726	+		GFF1936	0.65	-0.3
1,961,726	+		GFF1936	0.65	+0.1
1,961,734	-		GFF1936	0.66	+0.5
1,961,770	+		GFF1936	0.69	-1.3
1,961,806	+		GFF1936	0.72	-0.3
1,961,821	+		GFF1936	0.73	-0.9
1,961,822	-		GFF1936	0.74	+0.1
1,961,834	+		GFF1936	0.75	+0.1
1,961,839	+		GFF1936	0.75	-2.0
1,961,842	-		GFF1936	0.75	+1.3
1,961,842	-		GFF1936	0.75	-2.6
1,961,854	-		GFF1936	0.76	+0.3
1,961,854	-		GFF1936	0.76	-0.4
1,961,864	-		GFF1936	0.77	-1.4
1,961,868	+		GFF1936	0.78	+0.4
1,961,876	-		GFF1936	0.78	-0.1
1,961,876	-		GFF1936	0.78	-0.2
1,961,882	-		GFF1936	0.79	-0.6
1,961,901	+		GFF1936	0.80	-0.5
1,961,907	+		GFF1936	0.81	-0.4
1,961,907	+		GFF1936	0.81	+0.3
1,961,907	+		GFF1936	0.81	+0.2
1,961,907	+		GFF1936	0.81	-0.3
1,961,907	+		GFF1936	0.81	+1.0
1,961,907	+		GFF1936	0.81	-1.2
1,961,907	+		GFF1936	0.81	-0.2
1,961,907	+		GFF1936	0.81	-0.7
1,961,907	+		GFF1936	0.81	-0.7
1,961,907	+		GFF1936	0.81	-0.7
1,961,907	+		GFF1936	0.81	-0.1
1,961,907	+		GFF1936	0.81	+0.4
1,961,907	+		GFF1936	0.81	+0.0
1,961,914	+		GFF1936	0.82	-0.7
1,961,914	-		GFF1936	0.82	-2.2
1,961,915	-		GFF1936	0.82	-0.7
1,961,915	-		GFF1936	0.82	-0.9
1,961,915	-		GFF1936	0.82	+0.4
1,961,915	-		GFF1936	0.82	-1.5
1,961,915	-		GFF1936	0.82	-0.5
1,961,915	-		GFF1936	0.82	-0.1
1,961,915	-		GFF1936	0.82	+0.7
1,961,915	-		GFF1936	0.82	-1.3
1,961,915	-		GFF1936	0.82	+0.2
1,961,915	-		GFF1936	0.82	-1.9
1,961,915	-		GFF1936	0.82	-0.4
1,961,922	-		GFF1936	0.82	-2.0
1,961,962	+		GFF1936	0.86	-1.9
1,961,962	+		GFF1936	0.86	-0.8
1,961,970	-		GFF1936	0.86	+0.6
1,962,023	+				-2.3
1,962,027	+				+0.0
1,962,027	+				-1.5
1,962,033	-				+1.0
1,962,035	-				-1.7
1,962,035	-				+0.2
1,962,036	+				-0.3
1,962,076	-				+0.1
1,962,076	-				+0.2
1,962,076	-				-0.1
1,962,076	-				+1.5
1,962,076	-				+0.5
1,962,076	-				+0.5
1,962,085	+				-1.2
1,962,085	+				+0.3
1,962,086	-				-1.7
1,962,110	+				-0.0
1,962,132	+				-0.6
1,962,132	+				-2.6
1,962,153	-				+0.3
1,962,191	-				-1.5
1,962,205	-				-0.7
1,962,225	-				-0.2
1,962,238	+				+1.5
1,962,238	+				+1.0
1,962,246	-				-1.6
1,962,274	+				+0.0
1,962,275	-				+0.2
1,962,282	-				+0.5
1,962,283	-				-0.2
1,962,293	-				+0.4
1,962,325	-				+0.2
1,962,347	+		GFF1937	0.11	+1.0
1,962,355	-		GFF1937	0.11	-0.8
1,962,364	+		GFF1937	0.12	-0.8
1,962,364	+		GFF1937	0.12	+0.2
1,962,364	+		GFF1937	0.12	-1.0
1,962,364	+		GFF1937	0.12	-0.9
1,962,364	+		GFF1937	0.12	+0.3
1,962,364	+		GFF1937	0.12	-1.8
1,962,372	-		GFF1937	0.12	-0.1
1,962,372	-		GFF1937	0.12	+0.4
1,962,372	-		GFF1937	0.12	-0.9
1,962,372	-		GFF1937	0.12	-1.5
1,962,372	-		GFF1937	0.12	+2.0
1,962,372	-		GFF1937	0.12	-0.0
1,962,372	-		GFF1937	0.12	-0.0
1,962,372	-		GFF1937	0.12	-0.8
1,962,372	-		GFF1937	0.12	+0.4
1,962,372	-		GFF1937	0.12	-0.1
1,962,372	-		GFF1937	0.12	+0.3
1,962,372	-		GFF1937	0.12	-0.9
1,962,374	+		GFF1937	0.12	+0.6
1,962,377	-		GFF1937	0.12	-1.5
1,962,382	-		GFF1937	0.13	-0.0
1,962,382	-		GFF1937	0.13	-1.2
1,962,382	-		GFF1937	0.13	+0.5
1,962,391	+		GFF1937	0.13	+0.3
1,962,392	-		GFF1937	0.13	-0.8
1,962,392	-		GFF1937	0.13	-0.2
1,962,392	-		GFF1937	0.13	-0.7
1,962,399	-		GFF1937	0.14	+0.7
1,962,401	+		GFF1937	0.14	+0.5
1,962,408	-		GFF1937	0.14	+0.3
1,962,409	-		GFF1937	0.14	-0.9
1,962,463	-		GFF1937	0.17	-1.2
1,962,463	-		GFF1937	0.17	+0.9
1,962,469	-		GFF1937	0.17	+0.6
1,962,513	-		GFF1937	0.20	-0.3
1,962,556	-		GFF1937	0.22	+0.9
1,962,556	-		GFF1937	0.22	+1.8
1,962,558	+		GFF1937	0.22	-0.6
1,962,566	-		GFF1937	0.22	-0.5
1,962,573	+		GFF1937	0.23	-2.6
1,962,573	+		GFF1937	0.23	-0.5
1,962,581	-		GFF1937	0.23	+0.2
1,962,583	-		GFF1937	0.23	-0.6
1,962,600	+		GFF1937	0.24	-0.1
1,962,600	-		GFF1937	0.24	+0.4
1,962,607	+		GFF1937	0.24	-0.6
1,962,608	-		GFF1937	0.24	-0.2
1,962,628	+		GFF1937	0.26	+0.6
1,962,636	-		GFF1937	0.26	-1.0
1,962,639	+		GFF1937	0.26	-2.5
1,962,657	+		GFF1937	0.27	-0.2
1,962,664	+		GFF1937	0.27	+0.4
1,962,744	+		GFF1937	0.32	+1.0
1,962,752	+		GFF1937	0.32	-1.4
1,962,752	+		GFF1937	0.32	+1.2
1,962,752	+		GFF1937	0.32	+1.3
1,962,762	+		GFF1937	0.32	-0.1
1,962,762	+		GFF1937	0.32	+1.3
1,962,762	+		GFF1937	0.32	+1.1
1,962,762	+		GFF1937	0.32	-0.3
1,962,762	+		GFF1937	0.32	+0.5
1,962,762	+		GFF1937	0.32	-0.3
1,962,770	-		GFF1937	0.33	-0.8
1,962,794	+		GFF1937	0.34	+0.4
1,962,802	-		GFF1937	0.35	-0.4
1,962,812	-		GFF1937	0.35	-0.9
1,962,827	+		GFF1937	0.36	+0.5
1,962,842	+		GFF1937	0.37	-0.2
1,962,850	-		GFF1937	0.37	-0.9
1,962,850	-		GFF1937	0.37	+0.1
1,962,850	-		GFF1937	0.37	-1.7
1,962,850	-		GFF1937	0.37	-0.9
1,962,864	-		GFF1937	0.38	+1.8
1,962,872	+		GFF1937	0.38	+0.6
1,962,888	-		GFF1937	0.39	-0.2
1,962,888	-		GFF1937	0.39	+0.3
1,962,898	+		GFF1937	0.40	-1.6
1,962,921	+		GFF1937	0.41	-0.2
1,962,928	+		GFF1937	0.41	-0.4
1,962,928	+		GFF1937	0.41	+0.4
1,962,928	+		GFF1937	0.41	-0.7
1,962,929	-		GFF1937	0.41	+0.1
1,962,929	-		GFF1937	0.41	+0.0
1,962,936	-		GFF1937	0.41	-0.6
1,962,979	-		GFF1937	0.44	-0.4
1,963,012	+		GFF1937	0.45	-1.0
1,963,014	+		GFF1937	0.46	+0.1
1,963,066	+		GFF1937	0.48	+0.3
1,963,066	+		GFF1937	0.48	+1.3
1,963,068	+		GFF1937	0.48	+0.2
1,963,072	-		GFF1937	0.49	-0.2
1,963,074	-		GFF1937	0.49	-1.1
1,963,074	-		GFF1937	0.49	+0.0
1,963,074	-		GFF1937	0.49	-1.9
1,963,078	-		GFF1937	0.49	+0.4
1,963,111	+		GFF1937	0.51	-0.9