Strain Fitness in Sphingobium sp. HT1-2 around GFF1867

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,893,409	+				+0.3
1,893,458	+				+0.6
1,893,463	+				+0.4
1,893,464	-				-1.9
1,893,466	-				+0.2
1,893,466	-				-0.6
1,893,471	-				-1.8
1,893,471	-				+0.4
1,893,491	+				+1.2
1,893,499	-				+0.3
1,893,518	+				+0.6
1,893,526	-				+0.2
1,893,526	-				-0.2
1,893,539	+				+0.3
1,893,542	-				-0.9
1,893,542	-				+0.1
1,893,547	+				+0.1
1,893,547	+				-0.9
1,893,552	-				-1.8
1,893,552	-				+0.5
1,893,570	-		GFF1866	0.12	+1.1
1,893,576	+		GFF1866	0.13	+0.2
1,893,584	+		GFF1866	0.13	-1.1
1,893,586	+		GFF1866	0.14	-0.9
1,893,589	-		GFF1866	0.14	+0.5
1,893,589	-		GFF1866	0.14	-0.4
1,893,592	-		GFF1866	0.14	-0.9
1,893,594	+		GFF1866	0.15	+0.4
1,893,594	-		GFF1866	0.15	-0.9
1,893,594	-		GFF1866	0.15	-0.0
1,893,601	+		GFF1866	0.15	+1.3
1,893,601	+		GFF1866	0.15	+0.3
1,893,632	+		GFF1866	0.19	+0.2
1,893,632	+		GFF1866	0.19	-0.9
1,893,640	-		GFF1866	0.20	-2.1
1,893,642	-		GFF1866	0.20	+0.4
1,893,651	+		GFF1866	0.21	+0.8
1,893,665	-		GFF1866	0.22	+1.3
1,893,665	-		GFF1866	0.22	-0.4
1,893,667	+		GFF1866	0.23	+0.6
1,893,677	+		GFF1866	0.24	+0.1
1,893,677	+		GFF1866	0.24	-0.2
1,893,677	+		GFF1866	0.24	+0.7
1,893,677	+		GFF1866	0.24	+0.1
1,893,677	+		GFF1866	0.24	+0.5
1,893,677	+		GFF1866	0.24	-1.9
1,893,677	+		GFF1866	0.24	-0.5
1,893,685	-		GFF1866	0.25	-0.8
1,893,685	-		GFF1866	0.25	-0.3
1,893,685	-		GFF1866	0.25	-2.7
1,893,702	-		GFF1866	0.26	+0.5
1,893,724	-		GFF1866	0.29	-0.7
1,893,742	+		GFF1866	0.31	-0.9
1,893,742	+		GFF1866	0.31	-2.0
1,893,742	+		GFF1866	0.31	+0.2
1,893,742	+		GFF1866	0.31	+1.0
1,893,742	+		GFF1866	0.31	-1.4
1,893,742	+		GFF1866	0.31	+0.2
1,893,742	+		GFF1866	0.31	-0.2
1,893,742	+		GFF1866	0.31	+0.2
1,893,742	+		GFF1866	0.31	-1.2
1,893,742	+		GFF1866	0.31	+0.2
1,893,742	+		GFF1866	0.31	-0.7
1,893,742	+		GFF1866	0.31	-1.6
1,893,742	+		GFF1866	0.31	-1.3
1,893,742	+		GFF1866	0.31	-1.7
1,893,742	+		GFF1866	0.31	-1.0
1,893,742	+		GFF1866	0.31	-0.3
1,893,742	+		GFF1866	0.31	+0.1
1,893,742	+		GFF1866	0.31	+0.7
1,893,742	+		GFF1866	0.31	+0.3
1,893,742	+		GFF1866	0.31	-0.4
1,893,742	+		GFF1866	0.31	-0.6
1,893,742	+		GFF1866	0.31	+1.5
1,893,742	+		GFF1866	0.31	-2.2
1,893,742	+		GFF1866	0.31	+0.9
1,893,742	+		GFF1866	0.31	-0.2
1,893,742	+		GFF1866	0.31	+1.3
1,893,742	+		GFF1866	0.31	+0.2
1,893,742	+		GFF1866	0.31	+0.5
1,893,742	+		GFF1866	0.31	-1.1
1,893,742	+		GFF1866	0.31	-1.6
1,893,742	+		GFF1866	0.31	+0.4
1,893,742	+		GFF1866	0.31	+1.0
1,893,742	+		GFF1866	0.31	+0.2
1,893,742	-		GFF1866	0.31	+0.4
1,893,747	+		GFF1866	0.31	-0.1
1,893,747	+		GFF1866	0.31	-0.6
1,893,750	-		GFF1866	0.32	+0.2
1,893,750	-		GFF1866	0.32	-0.8
1,893,750	-		GFF1866	0.32	-1.4
1,893,750	-		GFF1866	0.32	-1.9
1,893,750	-		GFF1866	0.32	+1.0
1,893,750	-		GFF1866	0.32	+0.2
1,893,750	-		GFF1866	0.32	-0.2
1,893,750	-		GFF1866	0.32	+0.2
1,893,750	-		GFF1866	0.32	-1.2
1,893,750	-		GFF1866	0.32	+0.9
1,893,750	-		GFF1866	0.32	-0.4
1,893,750	-		GFF1866	0.32	-0.2
1,893,750	-		GFF1866	0.32	-0.1
1,893,750	-		GFF1866	0.32	-1.4
1,893,750	-		GFF1866	0.32	-0.7
1,893,750	-		GFF1866	0.32	-0.2
1,893,750	-		GFF1866	0.32	+0.3
1,893,750	-		GFF1866	0.32	-0.9
1,893,750	-		GFF1866	0.32	-1.2
1,893,750	-		GFF1866	0.32	-1.1
1,893,750	-		GFF1866	0.32	+0.5
1,893,750	-		GFF1866	0.32	-0.4
1,893,750	-		GFF1866	0.32	-0.1
1,893,750	-		GFF1866	0.32	+0.5
1,893,754	+		GFF1866	0.32	-1.1
1,893,755	-		GFF1866	0.32	-0.9
1,893,757	+		GFF1866	0.33	-0.2
1,893,757	+		GFF1866	0.33	+0.1
1,893,757	+		GFF1866	0.33	-0.2
1,893,757	-		GFF1866	0.33	-0.3
1,893,757	-		GFF1866	0.33	-0.5
1,893,760	-		GFF1866	0.33	-1.8
1,893,762	+		GFF1866	0.33	+1.3
1,893,765	-		GFF1866	0.33	-0.6
1,893,766	+		GFF1866	0.34	+0.3
1,893,766	+		GFF1866	0.34	+0.1
1,893,776	-		GFF1866	0.35	+0.9
1,893,779	+		GFF1866	0.35	+0.3
1,893,784	+		GFF1866	0.36	+0.5
1,893,787	-		GFF1866	0.36	-0.3
1,893,794	-		GFF1866	0.37	+0.1
1,893,795	-		GFF1866	0.37	-0.3
1,893,805	-		GFF1866	0.38	-0.6
1,893,821	-		GFF1866	0.40	-0.1
1,893,857	+		GFF1866	0.44	+0.7
1,893,857	+		GFF1866	0.44	-1.5
1,893,857	+		GFF1866	0.44	+1.5
1,893,857	+		GFF1866	0.44	-2.2
1,893,857	+		GFF1866	0.44	-0.8
1,893,865	-		GFF1866	0.45	-0.3
1,893,877	+		GFF1866	0.46	-0.5
1,893,877	+		GFF1866	0.46	-2.2
1,893,877	+		GFF1866	0.46	-0.3
1,893,877	+		GFF1866	0.46	-0.0
1,893,877	+		GFF1866	0.46	+0.3
1,893,877	+		GFF1866	0.46	-0.8
1,893,877	+		GFF1866	0.46	-0.5
1,893,877	+		GFF1866	0.46	+0.1
1,893,877	+		GFF1866	0.46	-0.8
1,893,882	+		GFF1866	0.46	+0.2
1,893,882	+		GFF1866	0.46	+0.5
1,893,885	-		GFF1866	0.47	-0.4
1,893,885	-		GFF1866	0.47	-0.4
1,893,887	+		GFF1866	0.47	-0.4
1,893,887	+		GFF1866	0.47	+0.2
1,893,893	+		GFF1866	0.48	+0.8
1,893,893	+		GFF1866	0.48	+0.1
1,893,897	+		GFF1866	0.48	-1.7
1,893,897	+		GFF1866	0.48	+0.1
1,893,922	+		GFF1866	0.51	-0.3
1,893,925	-		GFF1866	0.51	-1.1
1,893,933	+		GFF1866	0.52	+0.2
1,893,933	+		GFF1866	0.52	+1.9
1,893,933	+		GFF1866	0.52	-2.5
1,893,941	-		GFF1866	0.53	+1.1
1,893,941	-		GFF1866	0.53	-1.3
1,893,941	-		GFF1866	0.53	+0.4
1,893,941	-		GFF1866	0.53	-1.3
1,893,941	-		GFF1866	0.53	-0.2
1,893,941	-		GFF1866	0.53	-0.5
1,893,941	-		GFF1866	0.53	-0.8
1,893,957	+		GFF1866	0.55	-2.3
1,893,957	+		GFF1866	0.55	+0.5
1,893,957	+		GFF1866	0.55	-0.6
1,893,957	+		GFF1866	0.55	-1.3
1,893,957	+		GFF1866	0.55	-2.4
1,893,957	+		GFF1866	0.55	-0.4
1,893,957	+		GFF1866	0.55	+0.6
1,893,957	+		GFF1866	0.55	+0.5
1,893,963	-		GFF1866	0.55	-1.3
1,893,965	-		GFF1866	0.56	-1.2
1,893,965	-		GFF1866	0.56	-0.7
1,893,965	-		GFF1866	0.56	-0.1
1,893,965	-		GFF1866	0.56	-1.1
1,893,965	-		GFF1866	0.56	+0.8
1,893,965	-		GFF1866	0.56	+0.2
1,893,965	-		GFF1866	0.56	+0.2
1,893,965	-		GFF1866	0.56	-2.1
1,893,965	-		GFF1866	0.56	+0.9
1,893,965	-		GFF1866	0.56	+0.0
1,893,965	-		GFF1866	0.56	-1.0
1,893,970	-		GFF1866	0.56	+0.3
1,894,000	-		GFF1866	0.59	-0.4
1,894,005	-		GFF1866	0.60	-1.8
1,894,014	+		GFF1866	0.61	-0.6
1,894,014	+		GFF1866	0.61	-1.5
1,894,014	+		GFF1866	0.61	-0.8
1,894,014	+		GFF1866	0.61	+1.1
1,894,067	+		GFF1866	0.67	-0.7
1,894,075	-		GFF1866	0.68	-0.3
1,894,075	-		GFF1866	0.68	-0.1
1,894,075	-		GFF1866	0.68	+0.3
1,894,075	-		GFF1866	0.68	-1.5
1,894,138	+		GFF1866	0.75	-1.9
1,894,161	+		GFF1866	0.77	+0.1
1,894,169	-		GFF1866	0.78	+0.5
1,894,176	+		GFF1866	0.79	-0.2
1,894,178	+		GFF1866	0.79	+0.3
1,894,179	-		GFF1866	0.79	-0.5
1,894,179	-		GFF1866	0.79	+0.6
1,894,179	-		GFF1866	0.79	+0.2
1,894,186	-		GFF1866	0.80	-0.8
1,894,188	+		GFF1866	0.80	+1.8
1,894,193	+		GFF1866	0.81	-0.4
1,894,193	+		GFF1866	0.81	-0.6
1,894,193	+		GFF1866	0.81	+0.9
1,894,193	+		GFF1866	0.81	-1.3
1,894,201	-		GFF1866	0.82	+0.4
1,894,201	-		GFF1866	0.82	-0.4
1,894,206	-		GFF1866	0.82	-0.5
1,894,206	-		GFF1866	0.82	-2.2
1,894,208	+		GFF1866	0.83	-0.3
1,894,213	+		GFF1866	0.83	-0.2
1,894,213	+		GFF1866	0.83	-0.1
1,894,213	+		GFF1866	0.83	+0.7
1,894,213	+		GFF1866	0.83	-0.6
1,894,213	+		GFF1866	0.83	-0.3
1,894,213	+		GFF1866	0.83	-1.8
1,894,213	+		GFF1866	0.83	-1.8
1,894,213	+		GFF1866	0.83	-0.8
1,894,213	+		GFF1866	0.83	-0.9
1,894,213	+		GFF1866	0.83	-1.0
1,894,213	+		GFF1866	0.83	-0.6
1,894,213	+		GFF1866	0.83	+0.3
1,894,213	+		GFF1866	0.83	-0.2
1,894,213	+		GFF1866	0.83	-1.9
1,894,213	+		GFF1866	0.83	-0.6
1,894,213	+		GFF1866	0.83	-1.3
1,894,213	+		GFF1866	0.83	-1.1
1,894,213	+		GFF1866	0.83	+1.3
1,894,213	+		GFF1866	0.83	-0.5
1,894,213	+		GFF1866	0.83	-0.5
1,894,213	+		GFF1866	0.83	+0.2
1,894,216	-		GFF1866	0.83	-0.0
1,894,218	+		GFF1866	0.84	-0.9
1,894,221	-		GFF1866	0.84	+0.5
1,894,221	-		GFF1866	0.84	-0.6
1,894,221	-		GFF1866	0.84	-1.2
1,894,221	-		GFF1866	0.84	+0.3
1,894,221	-		GFF1866	0.84	-0.6
1,894,221	-		GFF1866	0.84	-0.5
1,894,221	-		GFF1866	0.84	+1.3
1,894,221	-		GFF1866	0.84	-2.3
1,894,221	-		GFF1866	0.84	+0.1
1,894,221	-		GFF1866	0.84	-0.5
1,894,221	-		GFF1866	0.84	+0.4
1,894,221	-		GFF1866	0.84	-0.2
1,894,221	-		GFF1866	0.84	-0.7
1,894,221	-		GFF1866	0.84	-0.2
1,894,221	-		GFF1866	0.84	-0.2
1,894,221	-		GFF1866	0.84	-0.6
1,894,221	-		GFF1866	0.84	-0.8
1,894,221	-		GFF1866	0.84	-0.4
1,894,221	-		GFF1866	0.84	+0.5
1,894,221	-		GFF1866	0.84	-0.2
1,894,221	-		GFF1866	0.84	-0.2
1,894,221	-		GFF1866	0.84	-0.2
1,894,221	-		GFF1866	0.84	-0.8
1,894,221	-		GFF1866	0.84	-1.3
1,894,221	-		GFF1866	0.84	-0.4
1,894,221	-		GFF1866	0.84	-0.5
1,894,221	-		GFF1866	0.84	+0.5
1,894,221	-		GFF1866	0.84	+0.6
1,894,226	-		GFF1866	0.84	+0.5
1,894,226	-		GFF1866	0.84	+0.0
1,894,226	-		GFF1866	0.84	-0.4
1,894,226	-		GFF1866	0.84	+0.5
1,894,226	-		GFF1866	0.84	-2.2
1,894,231	+		GFF1866	0.85	+1.4
1,894,236	+		GFF1866	0.86	+0.3
1,894,236	+		GFF1866	0.86	-0.4
1,894,249	-		GFF1866	0.87	+1.2
1,894,283	+				+0.6
1,894,293	+				-0.7
1,894,296	-				+0.4
1,894,301	-				+0.4
1,894,303	+				-1.5
1,894,303	+				-0.3
1,894,305	+				-0.6
1,894,306	-				-0.1
1,894,311	-				+0.1
1,894,313	-				-1.5
1,894,316	-				+0.5
1,894,331	-				-0.4
1,894,336	-				+0.1
1,894,343	+				-0.2
1,894,353	+				-1.1
1,894,359	+				-0.7
1,894,359	+				-1.6
1,894,359	+				-1.3
1,894,359	+				-0.5
1,894,362	-				+0.3
1,894,362	-				-1.9
1,894,367	-				+0.4
1,894,367	-				-0.9
1,894,367	-				+1.0
1,894,367	-				+0.2
1,894,369	-				-1.9
1,894,388	+				-0.6
1,894,388	+				-0.6
1,894,388	+				+0.1
1,894,388	+				-2.1
1,894,396	-				+0.8
1,894,396	-				-2.5
1,894,399	+				+0.9
1,894,405	-				-1.8
1,894,405	-				+2.2
1,894,405	-				-0.8
1,894,407	-				+0.2
1,894,429	+				+1.0
1,894,429	+				+1.0
1,894,449	+				+1.1
1,894,454	+				-0.5
1,894,454	+				+0.3
1,894,459	+				+0.9
1,894,459	+				-0.5
1,894,459	+				+0.7
1,894,462	-				-0.2
1,894,467	-		GFF1867	0.10	+1.3
1,894,467	-		GFF1867	0.10	+0.5
1,894,467	-		GFF1867	0.10	+0.0
1,894,469	+		GFF1867	0.10	-0.1
1,894,469	+		GFF1867	0.10	-0.2
1,894,474	-		GFF1867	0.11	+0.8
1,894,517	+		GFF1867	0.17	+0.4
1,894,525	-		GFF1867	0.18	+1.0
1,894,531	-		GFF1867	0.19	-0.0
1,894,541	+		GFF1867	0.20	+0.2
1,894,583	+		GFF1867	0.25	+0.9
1,894,593	+		GFF1867	0.27	+1.4
1,894,593	+		GFF1867	0.27	+0.5
1,894,598	+		GFF1867	0.27	+0.1
1,894,598	+		GFF1867	0.27	+0.7
1,894,598	+		GFF1867	0.27	+0.6
1,894,598	+		GFF1867	0.27	-1.5
1,894,608	+		GFF1867	0.29	+1.0
1,894,616	-		GFF1867	0.30	-1.6
1,894,627	-		GFF1867	0.31	-0.0
1,894,647	+		GFF1867	0.34	+0.4
1,894,679	+		GFF1867	0.38	-2.1
1,894,684	-		GFF1867	0.39	-0.3
1,894,697	+		GFF1867	0.40	-0.7
1,894,705	-		GFF1867	0.42	-0.6
1,894,705	-		GFF1867	0.42	-0.4
1,894,708	+		GFF1867	0.42	-1.1
1,894,710	-		GFF1867	0.42	+0.4
1,894,716	-		GFF1867	0.43	+0.9
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1,895,073	-				-0.2
1,895,166	+				+1.1
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1,895,175	-				+0.4
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1,895,186	+				-0.1
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1,895,193	+				+0.6
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1,895,201	-				+1.9
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1,895,212	-				+0.8
1,895,212	-				+0.8
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1,895,230	-				-2.9
1,895,230	-				+0.7
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