Strain Fitness in Sphingobium sp. HT1-2 around GFF1843

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,866,116	+		GFF1842	0.35	+0.2
1,866,152	+		GFF1842	0.37	+0.6
1,866,152	+		GFF1842	0.37	-0.5
1,866,152	+		GFF1842	0.37	+1.4
1,866,152	+		GFF1842	0.37	-1.7
1,866,160	-		GFF1842	0.38	+0.2
1,866,160	-		GFF1842	0.38	+0.9
1,866,197	-		GFF1842	0.40	+0.1
1,866,220	-		GFF1842	0.42	-1.8
1,866,220	-		GFF1842	0.42	-1.6
1,866,263	-		GFF1842	0.45	+0.6
1,866,272	-		GFF1842	0.45	-0.7
1,866,274	+		GFF1842	0.45	-0.8
1,866,282	-		GFF1842	0.46	-0.2
1,866,282	-		GFF1842	0.46	+1.1
1,866,282	-		GFF1842	0.46	+0.9
1,866,282	-		GFF1842	0.46	+0.9
1,866,293	+		GFF1842	0.47	-1.8
1,866,301	-		GFF1842	0.47	+1.4
1,866,331	+		GFF1842	0.49	+0.4
1,866,332	-		GFF1842	0.49	+0.5
1,866,336	+		GFF1842	0.50	+0.8
1,866,345	+		GFF1842	0.50	+0.2
1,866,345	+		GFF1842	0.50	-1.0
1,866,348	-		GFF1842	0.50	-0.1
1,866,350	+		GFF1842	0.50	-0.6
1,866,350	+		GFF1842	0.50	-0.1
1,866,350	+		GFF1842	0.50	+0.1
1,866,353	-		GFF1842	0.51	-1.0
1,866,355	+		GFF1842	0.51	-0.9
1,866,358	-		GFF1842	0.51	+1.5
1,866,416	+		GFF1842	0.55	+0.2
1,866,435	+		GFF1842	0.56	+0.2
1,866,521	+		GFF1842	0.62	+0.2
1,866,522	+		GFF1842	0.62	-0.1
1,866,522	+		GFF1842	0.62	+0.4
1,866,522	+		GFF1842	0.62	+0.1
1,866,530	+		GFF1842	0.62	-0.3
1,866,530	-		GFF1842	0.62	-0.4
1,866,537	+		GFF1842	0.63	-0.7
1,866,537	+		GFF1842	0.63	-1.0
1,866,537	+		GFF1842	0.63	+1.2
1,866,545	-		GFF1842	0.63	-0.2
1,866,545	-		GFF1842	0.63	-1.8
1,866,545	-		GFF1842	0.63	-0.5
1,866,545	-		GFF1842	0.63	+0.1
1,866,545	-		GFF1842	0.63	+0.4
1,866,554	+		GFF1842	0.64	+0.0
1,866,566	+		GFF1842	0.65	-0.5
1,866,566	+		GFF1842	0.65	-0.2
1,866,588	+		GFF1842	0.66	-1.8
1,866,602	-		GFF1842	0.67	-0.4
1,866,632	+		GFF1842	0.69	+0.4
1,866,632	+		GFF1842	0.69	+0.3
1,866,640	-		GFF1842	0.70	+0.4
1,866,640	-		GFF1842	0.70	-0.2
1,866,650	+		GFF1842	0.70	-0.1
1,866,650	+		GFF1842	0.70	+1.3
1,866,654	+		GFF1842	0.71	-0.6
1,866,657	-		GFF1842	0.71	-0.4
1,866,659	+		GFF1842	0.71	+0.2
1,866,664	+		GFF1842	0.71	-2.2
1,866,667	-		GFF1842	0.72	+0.1
1,866,672	-		GFF1842	0.72	-0.6
1,866,678	-		GFF1842	0.72	-0.5
1,866,715	+		GFF1842	0.75	+1.5
1,866,715	+		GFF1842	0.75	-0.4
1,866,722	+		GFF1842	0.75	-0.9
1,866,723	-		GFF1842	0.75	+0.8
1,866,723	-		GFF1842	0.75	-1.6
1,866,730	-		GFF1842	0.76	-1.2
1,866,733	-		GFF1842	0.76	+0.8
1,866,752	-		GFF1842	0.77	-0.1
1,866,765	-		GFF1842	0.78	-0.4
1,866,816	+		GFF1842	0.81	-1.1
1,866,827	+		GFF1842	0.82	-0.6
1,866,835	-		GFF1842	0.83	+1.0
1,866,837	+		GFF1842	0.83	+0.0
1,866,837	+		GFF1842	0.83	+0.1
1,866,837	+		GFF1842	0.83	-2.3
1,866,845	+		GFF1842	0.83	-0.6
1,866,845	-		GFF1842	0.83	+0.2
1,866,896	+		GFF1842	0.87	-1.2
1,866,945	+		GFF1842	0.90	-1.1
1,866,947	-				-1.2
1,866,957	+				-0.1
1,866,958	-				+0.2
1,866,964	-				-1.3
1,866,965	-				-1.5
1,866,982	+				-1.2
1,866,982	+				+1.4
1,866,982	+				-0.6
1,866,982	+				-1.9
1,866,982	+				-1.3
1,866,985	+				-2.6
1,866,985	+				+0.4
1,866,985	+				-2.7
1,866,985	+				-0.8
1,866,990	+				-1.5
1,866,990	-				+0.0
1,866,990	-				+0.8
1,866,990	-				+1.0
1,866,992	+				-0.9
1,866,992	+				+1.2
1,866,992	+				-0.5
1,866,992	+				-1.3
1,866,992	+				+0.9
1,866,993	-				-0.4
1,866,993	-				-0.1
1,866,993	-				-0.9
1,866,993	-				-1.5
1,866,993	-				-1.2
1,867,000	-				+0.8
1,867,011	+				-0.1
1,867,025	-				-0.6
1,867,038	+				-0.3
1,867,043	+				+0.1
1,867,063	+				-0.2
1,867,085	-				+0.0
1,867,092	+				-1.1
1,867,109	-				+0.2
1,867,152	-				+0.3
1,867,162	+				-1.8
1,867,223	+				-1.5
1,867,223	+				-1.6
1,867,223	+				-0.2
1,867,223	+				+1.3
1,867,223	+				-0.3
1,867,231	-				+0.8
1,867,236	-				-0.3
1,867,244	+				-0.6
1,867,265	+		GFF1843	0.11	+0.7
1,867,265	-		GFF1843	0.11	-0.6
1,867,267	+		GFF1843	0.12	+0.8
1,867,267	+		GFF1843	0.12	-1.2
1,867,267	+		GFF1843	0.12	-0.4
1,867,267	+		GFF1843	0.12	-2.0
1,867,267	+		GFF1843	0.12	+0.2
1,867,267	+		GFF1843	0.12	+0.5
1,867,267	+		GFF1843	0.12	+0.3
1,867,275	-		GFF1843	0.12	-2.3
1,867,275	-		GFF1843	0.12	-1.0
1,867,275	-		GFF1843	0.12	-0.6
1,867,275	-		GFF1843	0.12	+0.4
1,867,275	-		GFF1843	0.12	-0.4
1,867,275	-		GFF1843	0.12	+0.9
1,867,275	-		GFF1843	0.12	+0.3
1,867,275	-		GFF1843	0.12	-1.3
1,867,275	-		GFF1843	0.12	-0.1
1,867,275	-		GFF1843	0.12	-2.0
1,867,275	-		GFF1843	0.12	-0.4
1,867,277	+		GFF1843	0.12	+0.4
1,867,277	+		GFF1843	0.12	-0.3
1,867,277	+		GFF1843	0.12	-1.1
1,867,277	+		GFF1843	0.12	+1.7
1,867,277	+		GFF1843	0.12	+0.4
1,867,279	+		GFF1843	0.13	+0.5
1,867,279	+		GFF1843	0.13	-0.2
1,867,279	+		GFF1843	0.13	-0.6
1,867,279	+		GFF1843	0.13	-0.3
1,867,280	-		GFF1843	0.13	-1.4
1,867,285	-		GFF1843	0.13	-0.3
1,867,285	-		GFF1843	0.13	+0.0
1,867,285	-		GFF1843	0.13	-1.2
1,867,285	-		GFF1843	0.13	-0.7
1,867,285	-		GFF1843	0.13	-1.3
1,867,285	-		GFF1843	0.13	-1.1
1,867,285	-		GFF1843	0.13	+0.4
1,867,285	-		GFF1843	0.13	+0.9
1,867,285	-		GFF1843	0.13	-0.5
1,867,287	-		GFF1843	0.13	-1.5
1,867,287	-		GFF1843	0.13	-0.4
1,867,287	-		GFF1843	0.13	-0.7
1,867,303	+		GFF1843	0.14	-0.8
1,867,303	+		GFF1843	0.14	+0.2
1,867,311	-		GFF1843	0.15	-1.5
1,867,315	+		GFF1843	0.15	-0.6
1,867,315	+		GFF1843	0.15	+0.4
1,867,320	+		GFF1843	0.16	-1.0
1,867,325	+		GFF1843	0.16	-1.1
1,867,330	+		GFF1843	0.16	+0.8
1,867,332	+		GFF1843	0.17	-1.6
1,867,333	-		GFF1843	0.17	-2.3
1,867,338	-		GFF1843	0.17	-0.0
1,867,353	+		GFF1843	0.18	-0.9
1,867,355	-		GFF1843	0.18	+1.2
1,867,370	+		GFF1843	0.20	-0.9
1,867,375	+		GFF1843	0.20	-1.1
1,867,388	-		GFF1843	0.21	-0.3
1,867,388	-		GFF1843	0.21	-1.3
1,867,392	+		GFF1843	0.21	-1.6
1,867,415	-		GFF1843	0.23	-2.5
1,867,422	+		GFF1843	0.24	-1.7
1,867,422	+		GFF1843	0.24	-1.4
1,867,430	-		GFF1843	0.24	-0.8
1,867,430	-		GFF1843	0.24	+0.7
1,867,444	+		GFF1843	0.25	-1.9
1,867,444	+		GFF1843	0.25	-1.8
1,867,445	-		GFF1843	0.25	+0.8
1,867,449	+		GFF1843	0.26	+0.4
1,867,449	+		GFF1843	0.26	-0.7
1,867,452	-		GFF1843	0.26	+0.1
1,867,452	-		GFF1843	0.26	-0.7
1,867,454	-		GFF1843	0.26	-0.6
1,867,457	-		GFF1843	0.26	-0.3
1,867,457	-		GFF1843	0.26	-1.3
1,867,467	-		GFF1843	0.27	-1.0
1,867,467	-		GFF1843	0.27	+0.2
1,867,519	+		GFF1843	0.31	-1.2
1,867,519	+		GFF1843	0.31	-0.0
1,867,533	-		GFF1843	0.32	-1.8
1,867,550	+		GFF1843	0.33	-1.0
1,867,559	-		GFF1843	0.34	+0.4
1,867,561	-		GFF1843	0.34	+0.4
1,867,592	-		GFF1843	0.37	-0.7
1,867,616	+		GFF1843	0.38	-0.2
1,867,626	+		GFF1843	0.39	-0.8
1,867,634	-		GFF1843	0.40	-1.2
1,867,642	-		GFF1843	0.40	+0.7
1,867,674	+		GFF1843	0.43	-0.1
1,867,682	-		GFF1843	0.43	+0.1
1,867,682	-		GFF1843	0.43	+0.3
1,867,699	-		GFF1843	0.45	+0.7
1,867,705	+		GFF1843	0.45	-2.1
1,867,705	+		GFF1843	0.45	-1.3
1,867,706	+		GFF1843	0.45	-1.3
1,867,706	+		GFF1843	0.45	+0.5
1,867,728	-		GFF1843	0.47	-0.4
1,867,733	-		GFF1843	0.47	-1.4
1,867,739	+		GFF1843	0.48	+0.1
1,867,777	+		GFF1843	0.51	-0.6
1,867,795	-		GFF1843	0.52	-2.2
1,867,805	+		GFF1843	0.53	-1.5
1,867,834	+		GFF1843	0.55	-1.3
1,867,837	-		GFF1843	0.55	-0.3
1,867,873	+		GFF1843	0.58	+0.3
1,867,873	+		GFF1843	0.58	+1.1
1,867,899	-		GFF1843	0.60	-0.7
1,867,922	+		GFF1843	0.62	-0.6
1,867,922	+		GFF1843	0.62	-2.0
1,867,928	+		GFF1843	0.62	+0.0
1,867,930	-		GFF1843	0.63	+0.5
1,867,930	-		GFF1843	0.63	+0.1
1,867,947	-		GFF1843	0.64	-0.7
1,867,958	+		GFF1843	0.65	-1.3
1,867,980	-		GFF1843	0.66	-0.2
1,867,982	+		GFF1843	0.67	+0.5
1,867,982	+		GFF1843	0.67	-0.7
1,867,990	-		GFF1843	0.67	-0.2
1,868,003	-		GFF1843	0.68	+0.3
1,868,041	+		GFF1843	0.71	-1.0
1,868,054	-		GFF1843	0.72	-0.7
1,868,059	-		GFF1843	0.72	-0.9
1,868,082	+		GFF1843	0.74	-1.3
1,868,084	-		GFF1843	0.74	-0.3
1,868,105	-		GFF1843	0.76	-0.4
1,868,131	+		GFF1843	0.78	-0.5
1,868,135	+		GFF1843	0.78	-1.2
1,868,135	+		GFF1843	0.78	-0.2
1,868,135	+		GFF1843	0.78	+1.5
1,868,135	+		GFF1843	0.78	-0.7
1,868,135	+		GFF1843	0.78	-0.1
1,868,135	+		GFF1843	0.78	+1.2
1,868,135	+		GFF1843	0.78	+0.5
1,868,135	+		GFF1843	0.78	+0.5
1,868,135	+		GFF1843	0.78	-1.0
1,868,135	+		GFF1843	0.78	-0.3
1,868,135	+		GFF1843	0.78	-0.6
1,868,135	+		GFF1843	0.78	+0.1
1,868,136	+		GFF1843	0.78	-1.7
1,868,143	+		GFF1843	0.79	-0.4
1,868,143	-		GFF1843	0.79	-0.1
1,868,143	-		GFF1843	0.79	+0.5
1,868,143	-		GFF1843	0.79	-1.5
1,868,143	-		GFF1843	0.79	-0.8
1,868,143	-		GFF1843	0.79	+0.7
1,868,143	-		GFF1843	0.79	+0.1
1,868,143	-		GFF1843	0.79	-0.4
1,868,143	-		GFF1843	0.79	-0.7
1,868,143	-		GFF1843	0.79	+0.5
1,868,143	-		GFF1843	0.79	-0.9
1,868,143	-		GFF1843	0.79	-0.5
1,868,144	-		GFF1843	0.79	+0.5
1,868,146	+		GFF1843	0.79	-0.4
1,868,149	-		GFF1843	0.79	-2.3
1,868,154	-		GFF1843	0.80	+0.0
1,868,165	+		GFF1843	0.81	-1.2
1,868,170	-		GFF1843	0.81	-0.0
1,868,175	-		GFF1843	0.81	+0.2
1,868,175	-		GFF1843	0.81	+0.3
1,868,183	+		GFF1843	0.82	-1.6
1,868,251	+		GFF1843	0.87	-2.4
1,868,251	+		GFF1843	0.87	-1.3
1,868,251	+		GFF1843	0.87	-1.2
1,868,251	+		GFF1843	0.87	-1.4
1,868,253	+		GFF1843	0.87	+0.2
1,868,254	-		GFF1843	0.87	-0.5
1,868,254	-		GFF1843	0.87	-1.1
1,868,268	+		GFF1843	0.88	-3.0
1,868,279	+		GFF1843	0.89	-0.4
1,868,287	-				-2.9
1,868,287	-				-0.6
1,868,289	-				+0.1
1,868,310	-				+1.2
1,868,314	-				-2.5
1,868,386	-				+1.3
1,868,400	-				-1.5
1,868,402	+				-0.1
1,868,435	+				+0.4
1,868,443	-				+0.2
1,868,458	-				-0.3
1,868,479	-				-2.4
1,868,505	-				-1.1
1,868,514	+				-1.2
1,868,514	+				+0.6
1,868,514	+				-0.5
1,868,514	+				+0.4
1,868,522	-				+0.4
1,868,524	+				-1.7
1,868,524	+				-0.4
1,868,524	+				-0.5
1,868,524	+				+0.2
1,868,532	-				-0.4
1,868,532	-				-0.0
1,868,532	-				-0.8
1,868,532	-				-0.1
1,868,532	-				+0.5
1,868,570	+				-0.3
1,868,570	+				-0.4
1,868,570	+				-1.9
1,868,570	+				+0.1
1,868,570	+				+1.1
1,868,570	+				-0.1
1,868,570	+				-0.0
1,868,578	-				+0.8
1,868,578	-				-1.4
1,868,578	-				-0.9
1,868,630	+		GFF1844	0.10	+0.6
1,868,641	+		GFF1844	0.11	-3.5
1,868,689	-		GFF1844	0.16	+0.8
1,868,694	-		GFF1844	0.17	-2.0
1,868,700	-		GFF1844	0.17	-0.8
1,868,708	+		GFF1844	0.18	-0.1
1,868,714	+		GFF1844	0.19	+0.4
1,868,714	+		GFF1844	0.19	-1.6
1,868,714	-		GFF1844	0.19	+0.4
1,868,716	+		GFF1844	0.19	+0.4
1,868,748	+		GFF1844	0.22	-0.6
1,868,750	-		GFF1844	0.22	+0.1
1,868,756	-		GFF1844	0.23	-0.5
1,868,757	+		GFF1844	0.23	-0.8
1,868,757	+		GFF1844	0.23	-0.4
1,868,757	+		GFF1844	0.23	+0.5
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1,868,828	+		GFF1844	0.30	-1.8
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1,869,026	-		GFF1844	0.50	-0.3
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1,869,036	+		GFF1844	0.51	-1.8
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