Strain Fitness in Sphingobium sp. HT1-2 around GFF1842

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,864,594	-		GFF1841	0.43	-1.3
1,864,632	-		GFF1841	0.45	-0.9
1,864,651	+		GFF1841	0.46	-0.8
1,864,651	+		GFF1841	0.46	+0.4
1,864,667	+		GFF1841	0.47	+0.8
1,864,667	+		GFF1841	0.47	-0.5
1,864,672	+		GFF1841	0.48	+0.9
1,864,672	+		GFF1841	0.48	-1.6
1,864,677	+		GFF1841	0.48	-0.3
1,864,680	-		GFF1841	0.48	+0.4
1,864,680	-		GFF1841	0.48	-1.8
1,864,680	-		GFF1841	0.48	+0.6
1,864,680	-		GFF1841	0.48	-0.8
1,864,680	-		GFF1841	0.48	+0.0
1,864,708	+		GFF1841	0.50	+0.2
1,864,708	+		GFF1841	0.50	+0.6
1,864,708	+		GFF1841	0.50	-1.4
1,864,711	-		GFF1841	0.50	+0.9
1,864,716	-		GFF1841	0.50	-0.2
1,864,716	-		GFF1841	0.50	+1.6
1,864,764	+		GFF1841	0.53	-1.2
1,864,773	-		GFF1841	0.54	+0.3
1,864,774	+		GFF1841	0.54	-1.3
1,864,775	+		GFF1841	0.54	-1.5
1,864,776	-		GFF1841	0.54	-2.4
1,864,802	+		GFF1841	0.56	-0.1
1,864,811	+		GFF1841	0.56	-0.7
1,864,811	+		GFF1841	0.56	+0.4
1,864,826	+		GFF1841	0.57	-1.8
1,864,858	+		GFF1841	0.59	-1.4
1,864,866	-		GFF1841	0.59	-0.6
1,864,911	+		GFF1841	0.62	+0.2
1,864,925	-		GFF1841	0.63	-0.1
1,864,937	+		GFF1841	0.64	-0.5
1,864,944	-		GFF1841	0.64	-2.0
1,864,944	-		GFF1841	0.64	-0.3
1,864,956	+		GFF1841	0.65	+0.2
1,864,960	-		GFF1841	0.65	+0.4
1,864,975	+		GFF1841	0.66	+1.5
1,864,990	+		GFF1841	0.67	+0.3
1,864,990	+		GFF1841	0.67	-0.7
1,864,990	+		GFF1841	0.67	+0.6
1,864,990	+		GFF1841	0.67	-0.4
1,864,990	+		GFF1841	0.67	+0.2
1,864,990	+		GFF1841	0.67	+0.3
1,864,998	+		GFF1841	0.67	-0.5
1,864,998	+		GFF1841	0.67	+0.0
1,864,998	-		GFF1841	0.67	-2.4
1,865,005	-		GFF1841	0.68	-0.6
1,865,006	-		GFF1841	0.68	-1.6
1,865,022	-		GFF1841	0.69	-2.9
1,865,025	-		GFF1841	0.69	+0.5
1,865,052	+		GFF1841	0.71	-0.5
1,865,054	+		GFF1841	0.71	+0.5
1,865,060	+		GFF1841	0.71	+0.5
1,865,060	+		GFF1841	0.71	-0.1
1,865,061	-		GFF1841	0.71	-0.5
1,865,077	+		GFF1841	0.72	+1.0
1,865,077	+		GFF1841	0.72	+0.4
1,865,077	+		GFF1841	0.72	+0.5
1,865,077	+		GFF1841	0.72	-1.2
1,865,077	+		GFF1841	0.72	-2.1
1,865,085	-		GFF1841	0.73	-0.1
1,865,085	-		GFF1841	0.73	+0.4
1,865,085	-		GFF1841	0.73	-1.5
1,865,085	-		GFF1841	0.73	-0.3
1,865,085	-		GFF1841	0.73	+0.2
1,865,111	-		GFF1841	0.74	-2.1
1,865,113	+		GFF1841	0.74	-0.1
1,865,145	-		GFF1841	0.76	-0.9
1,865,206	+		GFF1841	0.80	+0.5
1,865,206	+		GFF1841	0.80	-2.0
1,865,223	-		GFF1841	0.81	-0.2
1,865,225	-		GFF1841	0.81	+0.6
1,865,225	-		GFF1841	0.81	-0.6
1,865,254	+		GFF1841	0.83	-0.1
1,865,254	+		GFF1841	0.83	+0.6
1,865,254	+		GFF1841	0.83	+0.1
1,865,254	+		GFF1841	0.83	+1.3
1,865,254	+		GFF1841	0.83	+0.9
1,865,254	+		GFF1841	0.83	+0.2
1,865,254	+		GFF1841	0.83	-1.3
1,865,254	+		GFF1841	0.83	-0.2
1,865,254	+		GFF1841	0.83	-1.1
1,865,254	+		GFF1841	0.83	-0.3
1,865,259	+		GFF1841	0.83	-1.7
1,865,262	-		GFF1841	0.83	-0.4
1,865,262	-		GFF1841	0.83	+0.4
1,865,262	-		GFF1841	0.83	+0.4
1,865,262	-		GFF1841	0.83	-0.2
1,865,262	-		GFF1841	0.83	+0.6
1,865,262	-		GFF1841	0.83	-0.6
1,865,276	-		GFF1841	0.84	+0.3
1,865,285	+		GFF1841	0.85	+0.2
1,865,293	-		GFF1841	0.85	+0.8
1,865,298	-		GFF1841	0.86	+0.1
1,865,326	-		GFF1841	0.87	-0.8
1,865,353	+		GFF1841	0.89	-0.4
1,865,358	+		GFF1841	0.89	+1.2
1,865,358	+		GFF1841	0.89	-0.6
1,865,373	+				-1.5
1,865,393	+				-1.5
1,865,393	+				-1.0
1,865,394	+				-0.4
1,865,394	+				+0.0
1,865,397	+				-0.0
1,865,402	-				+1.1
1,865,402	-				-1.8
1,865,402	-				+0.2
1,865,412	-				-0.7
1,865,463	+				-0.0
1,865,486	+				+0.1
1,865,486	+				+0.3
1,865,494	-				-0.1
1,865,518	-				+1.1
1,865,518	-				-0.6
1,865,520	+				-0.5
1,865,547	-				-1.0
1,865,570	-				-1.1
1,865,577	-				+0.3
1,865,586	+				+0.2
1,865,587	-				-0.7
1,865,596	+				+0.5
1,865,596	+				+0.2
1,865,604	-				-0.4
1,865,648	+				-0.8
1,865,648	+				-2.1
1,865,648	+				+0.7
1,865,648	+				-0.2
1,865,648	+				-1.5
1,865,648	+				-0.6
1,865,648	+				-0.2
1,865,648	+				-1.5
1,865,649	+				+1.4
1,865,656	-				-1.0
1,865,656	-				+0.1
1,865,656	-				+0.7
1,865,656	-				-0.8
1,865,656	-				-0.7
1,865,656	-				-0.1
1,865,657	-				-1.5
1,865,657	-				-1.1
1,865,657	-				+0.2
1,865,686	+				-1.3
1,865,763	+		GFF1842	0.12	-1.4
1,865,778	-		GFF1842	0.13	-0.2
1,865,815	+		GFF1842	0.15	+0.7
1,865,823	-		GFF1842	0.16	-1.2
1,865,823	-		GFF1842	0.16	-1.1
1,865,825	+		GFF1842	0.16	-2.0
1,865,839	-		GFF1842	0.17	-0.0
1,865,847	+		GFF1842	0.17	+0.9
1,865,847	+		GFF1842	0.17	+0.3
1,865,847	+		GFF1842	0.17	-0.4
1,865,865	-		GFF1842	0.18	-0.2
1,865,865	-		GFF1842	0.18	-0.5
1,865,865	-		GFF1842	0.18	-0.3
1,865,865	-		GFF1842	0.18	-1.3
1,865,865	-		GFF1842	0.18	-0.1
1,865,881	+		GFF1842	0.19	-0.8
1,865,886	+		GFF1842	0.20	-2.1
1,865,891	+		GFF1842	0.20	+0.6
1,865,891	+		GFF1842	0.20	-0.9
1,865,891	+		GFF1842	0.20	-0.0
1,865,894	-		GFF1842	0.20	+0.1
1,865,894	-		GFF1842	0.20	+0.4
1,865,894	-		GFF1842	0.20	-1.1
1,865,899	-		GFF1842	0.21	+0.3
1,865,899	-		GFF1842	0.21	+0.7
1,865,899	-		GFF1842	0.21	+0.7
1,865,899	-		GFF1842	0.21	+0.7
1,865,899	-		GFF1842	0.21	+0.3
1,865,911	+		GFF1842	0.21	+0.8
1,865,919	-		GFF1842	0.22	-1.5
1,865,919	-		GFF1842	0.22	+0.9
1,865,934	-		GFF1842	0.23	-1.3
1,865,934	-		GFF1842	0.23	-0.7
1,865,934	-		GFF1842	0.23	+0.5
1,865,937	-		GFF1842	0.23	+1.0
1,865,971	+		GFF1842	0.25	+0.3
1,865,979	-		GFF1842	0.26	-0.4
1,866,006	+		GFF1842	0.28	+0.8
1,866,006	+		GFF1842	0.28	-0.3
1,866,006	+		GFF1842	0.28	-0.5
1,866,020	+		GFF1842	0.29	+0.9
1,866,038	+		GFF1842	0.30	+1.7
1,866,044	+		GFF1842	0.30	-0.4
1,866,052	-		GFF1842	0.31	-0.1
1,866,074	+		GFF1842	0.32	-0.3
1,866,074	+		GFF1842	0.32	+0.6
1,866,076	+		GFF1842	0.32	+0.6
1,866,083	+		GFF1842	0.33	-0.3
1,866,083	-		GFF1842	0.33	+0.5
1,866,083	-		GFF1842	0.33	-0.2
1,866,085	+		GFF1842	0.33	+0.5
1,866,100	+		GFF1842	0.34	-0.9
1,866,108	-		GFF1842	0.34	-1.3
1,866,108	-		GFF1842	0.34	+0.7
1,866,108	-		GFF1842	0.34	-1.2
1,866,108	-		GFF1842	0.34	+0.9
1,866,108	-		GFF1842	0.34	+0.1
1,866,108	-		GFF1842	0.34	-2.0
1,866,116	+		GFF1842	0.35	+0.2
1,866,152	+		GFF1842	0.37	+0.6
1,866,152	+		GFF1842	0.37	-0.5
1,866,152	+		GFF1842	0.37	+1.4
1,866,152	+		GFF1842	0.37	-1.7
1,866,160	-		GFF1842	0.38	+0.2
1,866,160	-		GFF1842	0.38	+0.9
1,866,197	-		GFF1842	0.40	+0.1
1,866,220	-		GFF1842	0.42	-1.8
1,866,220	-		GFF1842	0.42	-1.6
1,866,263	-		GFF1842	0.45	+0.6
1,866,272	-		GFF1842	0.45	-0.7
1,866,274	+		GFF1842	0.45	-0.8
1,866,282	-		GFF1842	0.46	-0.2
1,866,282	-		GFF1842	0.46	+1.1
1,866,282	-		GFF1842	0.46	+0.9
1,866,282	-		GFF1842	0.46	+0.9
1,866,293	+		GFF1842	0.47	-1.8
1,866,301	-		GFF1842	0.47	+1.4
1,866,331	+		GFF1842	0.49	+0.4
1,866,332	-		GFF1842	0.49	+0.5
1,866,336	+		GFF1842	0.50	+0.8
1,866,345	+		GFF1842	0.50	+0.2
1,866,345	+		GFF1842	0.50	-1.0
1,866,348	-		GFF1842	0.50	-0.1
1,866,350	+		GFF1842	0.50	-0.6
1,866,350	+		GFF1842	0.50	-0.1
1,866,350	+		GFF1842	0.50	+0.1
1,866,353	-		GFF1842	0.51	-1.0
1,866,355	+		GFF1842	0.51	-0.9
1,866,358	-		GFF1842	0.51	+1.5
1,866,416	+		GFF1842	0.55	+0.2
1,866,435	+		GFF1842	0.56	+0.2
1,866,521	+		GFF1842	0.62	+0.2
1,866,522	+		GFF1842	0.62	-0.1
1,866,522	+		GFF1842	0.62	+0.4
1,866,522	+		GFF1842	0.62	+0.1
1,866,530	+		GFF1842	0.62	-0.3
1,866,530	-		GFF1842	0.62	-0.4
1,866,537	+		GFF1842	0.63	-0.7
1,866,537	+		GFF1842	0.63	-1.0
1,866,537	+		GFF1842	0.63	+1.2
1,866,545	-		GFF1842	0.63	-0.2
1,866,545	-		GFF1842	0.63	-1.8
1,866,545	-		GFF1842	0.63	-0.5
1,866,545	-		GFF1842	0.63	+0.1
1,866,545	-		GFF1842	0.63	+0.4
1,866,554	+		GFF1842	0.64	+0.0
1,866,566	+		GFF1842	0.65	-0.5
1,866,566	+		GFF1842	0.65	-0.2
1,866,588	+		GFF1842	0.66	-1.8
1,866,602	-		GFF1842	0.67	-0.4
1,866,632	+		GFF1842	0.69	+0.4
1,866,632	+		GFF1842	0.69	+0.3
1,866,640	-		GFF1842	0.70	+0.4
1,866,640	-		GFF1842	0.70	-0.2
1,866,650	+		GFF1842	0.70	-0.1
1,866,650	+		GFF1842	0.70	+1.3
1,866,654	+		GFF1842	0.71	-0.6
1,866,657	-		GFF1842	0.71	-0.4
1,866,659	+		GFF1842	0.71	+0.2
1,866,664	+		GFF1842	0.71	-2.2
1,866,667	-		GFF1842	0.72	+0.1
1,866,672	-		GFF1842	0.72	-0.6
1,866,678	-		GFF1842	0.72	-0.5
1,866,715	+		GFF1842	0.75	+1.5
1,866,715	+		GFF1842	0.75	-0.4
1,866,722	+		GFF1842	0.75	-0.9
1,866,723	-		GFF1842	0.75	+0.8
1,866,723	-		GFF1842	0.75	-1.6
1,866,730	-		GFF1842	0.76	-1.2
1,866,733	-		GFF1842	0.76	+0.8
1,866,752	-		GFF1842	0.77	-0.1
1,866,765	-		GFF1842	0.78	-0.4
1,866,816	+		GFF1842	0.81	-1.1
1,866,827	+		GFF1842	0.82	-0.6
1,866,835	-		GFF1842	0.83	+1.0
1,866,837	+		GFF1842	0.83	+0.0
1,866,837	+		GFF1842	0.83	+0.1
1,866,837	+		GFF1842	0.83	-2.3
1,866,845	+		GFF1842	0.83	-0.6
1,866,845	-		GFF1842	0.83	+0.2
1,866,896	+		GFF1842	0.87	-1.2
1,866,945	+		GFF1842	0.90	-1.1
1,866,947	-				-1.2
1,866,957	+				-0.1
1,866,958	-				+0.2
1,866,964	-				-1.3
1,866,965	-				-1.5
1,866,982	+				-1.2
1,866,982	+				+1.4
1,866,982	+				-0.6
1,866,982	+				-1.9
1,866,982	+				-1.3
1,866,985	+				-2.6
1,866,985	+				+0.4
1,866,985	+				-2.7
1,866,985	+				-0.8
1,866,990	+				-1.5
1,866,990	-				+0.0
1,866,990	-				+0.8
1,866,990	-				+1.0
1,866,992	+				-0.9
1,866,992	+				+1.2
1,866,992	+				-0.5
1,866,992	+				-1.3
1,866,992	+				+0.9
1,866,993	-				-0.4
1,866,993	-				-0.1
1,866,993	-				-0.9
1,866,993	-				-1.5
1,866,993	-				-1.2
1,867,000	-				+0.8
1,867,011	+				-0.1
1,867,025	-				-0.6
1,867,038	+				-0.3
1,867,043	+				+0.1
1,867,063	+				-0.2
1,867,085	-				+0.0
1,867,092	+				-1.1
1,867,109	-				+0.2
1,867,152	-				+0.3
1,867,162	+				-1.8
1,867,223	+				-1.5
1,867,223	+				-1.6
1,867,223	+				-0.2
1,867,223	+				+1.3
1,867,223	+				-0.3
1,867,231	-				+0.8
1,867,236	-				-0.3
1,867,244	+				-0.6
1,867,265	+		GFF1843	0.11	+0.7
1,867,265	-		GFF1843	0.11	-0.6
1,867,267	+		GFF1843	0.12	+0.8
1,867,267	+		GFF1843	0.12	-1.2
1,867,267	+		GFF1843	0.12	-0.4
1,867,267	+		GFF1843	0.12	-2.0
1,867,267	+		GFF1843	0.12	+0.2
1,867,267	+		GFF1843	0.12	+0.5
1,867,267	+		GFF1843	0.12	+0.3
1,867,275	-		GFF1843	0.12	-2.3
1,867,275	-		GFF1843	0.12	-1.0
1,867,275	-		GFF1843	0.12	-0.6
1,867,275	-		GFF1843	0.12	+0.4
1,867,275	-		GFF1843	0.12	-0.4
1,867,275	-		GFF1843	0.12	+0.9
1,867,275	-		GFF1843	0.12	+0.3
1,867,275	-		GFF1843	0.12	-1.3
1,867,275	-		GFF1843	0.12	-0.1
1,867,275	-		GFF1843	0.12	-2.0
1,867,275	-		GFF1843	0.12	-0.4
1,867,277	+		GFF1843	0.12	+0.4
1,867,277	+		GFF1843	0.12	-0.3
1,867,277	+		GFF1843	0.12	-1.1
1,867,277	+		GFF1843	0.12	+1.7
1,867,277	+		GFF1843	0.12	+0.4
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