Strain Fitness in Sphingobium sp. HT1-2 around GFF1824

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,843,843	+		GFF1823	0.27	+0.3
1,843,843	+		GFF1823	0.27	-0.8
1,843,846	-		GFF1823	0.28	+1.4
1,843,851	+		GFF1823	0.28	+0.4
1,843,851	-		GFF1823	0.28	+0.2
1,843,851	-		GFF1823	0.28	+0.6
1,843,851	-		GFF1823	0.28	-2.0
1,843,852	-		GFF1823	0.28	+1.5
1,843,866	+		GFF1823	0.29	+0.2
1,843,888	-		GFF1823	0.31	-0.4
1,843,889	-		GFF1823	0.32	-1.2
1,843,889	-		GFF1823	0.32	-2.2
1,843,914	+		GFF1823	0.34	+0.3
1,843,924	+		GFF1823	0.35	+0.3
1,843,962	+		GFF1823	0.38	-0.1
1,843,968	-		GFF1823	0.39	+0.7
1,843,968	-		GFF1823	0.39	-0.8
1,843,970	+		GFF1823	0.39	-1.4
1,843,970	-		GFF1823	0.39	-0.9
1,843,970	-		GFF1823	0.39	+0.3
1,844,026	+		GFF1823	0.44	-0.7
1,844,027	-		GFF1823	0.44	+1.0
1,844,033	+		GFF1823	0.45	+0.0
1,844,033	-		GFF1823	0.45	-1.0
1,844,058	+		GFF1823	0.47	+0.4
1,844,058	+		GFF1823	0.47	-0.6
1,844,062	+		GFF1823	0.47	-1.5
1,844,076	-		GFF1823	0.49	-0.9
1,844,095	+		GFF1823	0.50	+1.6
1,844,100	+		GFF1823	0.51	-0.5
1,844,100	+		GFF1823	0.51	-1.5
1,844,108	-		GFF1823	0.52	-0.2
1,844,120	+		GFF1823	0.53	+0.2
1,844,120	+		GFF1823	0.53	-1.3
1,844,120	+		GFF1823	0.53	-0.9
1,844,120	+		GFF1823	0.53	-1.4
1,844,120	+		GFF1823	0.53	-0.0
1,844,128	-		GFF1823	0.53	+0.3
1,844,128	-		GFF1823	0.53	-2.2
1,844,128	-		GFF1823	0.53	+0.8
1,844,128	-		GFF1823	0.53	-0.7
1,844,147	+		GFF1823	0.55	-1.2
1,844,154	+		GFF1823	0.56	+0.4
1,844,162	-		GFF1823	0.56	+0.7
1,844,164	+		GFF1823	0.57	+0.8
1,844,164	+		GFF1823	0.57	-0.4
1,844,171	+		GFF1823	0.57	+0.3
1,844,171	+		GFF1823	0.57	-0.4
1,844,172	-		GFF1823	0.57	-1.6
1,844,172	-		GFF1823	0.57	-0.6
1,844,179	-		GFF1823	0.58	+0.1
1,844,228	+		GFF1823	0.62	+1.6
1,844,241	-		GFF1823	0.64	-1.8
1,844,246	+		GFF1823	0.64	+0.4
1,844,246	+		GFF1823	0.64	-0.6
1,844,246	+		GFF1823	0.64	-0.8
1,844,246	+		GFF1823	0.64	-2.1
1,844,246	+		GFF1823	0.64	+1.3
1,844,246	+		GFF1823	0.64	+1.5
1,844,246	+		GFF1823	0.64	+1.5
1,844,254	-		GFF1823	0.65	+0.8
1,844,254	-		GFF1823	0.65	-0.1
1,844,254	-		GFF1823	0.65	+1.2
1,844,254	-		GFF1823	0.65	-0.6
1,844,254	-		GFF1823	0.65	+1.5
1,844,263	+		GFF1823	0.66	+0.6
1,844,271	-		GFF1823	0.66	+0.2
1,844,271	-		GFF1823	0.66	+0.2
1,844,271	-		GFF1823	0.66	-0.1
1,844,272	-		GFF1823	0.66	-2.0
1,844,316	+		GFF1823	0.71	+1.6
1,844,324	-		GFF1823	0.71	+0.2
1,844,324	-		GFF1823	0.71	-0.7
1,844,342	-		GFF1823	0.73	+1.1
1,844,369	+		GFF1823	0.75	-0.2
1,844,410	+		GFF1823	0.79	-0.6
1,844,410	+		GFF1823	0.79	+2.0
1,844,416	+		GFF1823	0.80	+0.9
1,844,442	-		GFF1823	0.82	-2.0
1,844,452	+		GFF1823	0.83	+0.2
1,844,452	+		GFF1823	0.83	+0.4
1,844,458	-		GFF1823	0.83	-2.8
1,844,460	-		GFF1823	0.84	-1.0
1,844,467	-		GFF1823	0.84	+0.9
1,844,471	-		GFF1823	0.85	+0.2
1,844,485	+		GFF1823	0.86	-0.4
1,844,511	-		GFF1823	0.88	-1.3
1,844,511	-		GFF1823	0.88	+0.3
1,844,519	+		GFF1823	0.89	-1.1
1,844,522	+		GFF1823	0.89	+0.0
1,844,530	-				-0.6
1,844,550	+				+0.3
1,844,550	+				-0.1
1,844,550	+				-1.7
1,844,550	+				-2.2
1,844,550	+				-0.4
1,844,550	+				-1.3
1,844,558	-				-0.6
1,844,558	-				+0.4
1,844,558	-				+0.2
1,844,558	-				+0.7
1,844,558	-				-2.2
1,844,558	-				-2.2
1,844,558	-				-1.2
1,844,558	-				+1.0
1,844,572	+				+0.8
1,844,584	+				+0.2
1,844,590	-				-0.9
1,844,626	+				+0.4
1,844,659	+				-0.1
1,844,673	+				-0.3
1,844,673	-				-0.1
1,844,684	-				+0.4
1,844,684	-				-1.1
1,844,688	-				-0.2
1,844,703	+				-0.7
1,844,733	+				-0.2
1,844,769	-				-1.1
1,844,774	-				-0.0
1,844,774	-				+0.0
1,844,785	+				-1.2
1,844,785	+				-0.4
1,844,785	+				-1.4
1,844,785	-				-0.2
1,844,793	-				-0.1
1,844,795	+				-1.7
1,844,795	-				-2.0
1,844,818	-				-0.4
1,844,822	+				+0.6
1,844,826	-				-1.2
1,844,858	-				+1.3
1,844,860	+				-0.0
1,844,887	+				-1.0
1,844,934	-		GFF1824	0.18	-2.0
1,844,936	+		GFF1824	0.18	-0.0
1,844,964	-		GFF1824	0.23	-0.5
1,844,977	+		GFF1824	0.25	+0.1
1,844,977	+		GFF1824	0.25	-1.3
1,844,987	+		GFF1824	0.27	-1.3
1,844,987	+		GFF1824	0.27	-1.0
1,844,987	+		GFF1824	0.27	+0.6
1,844,987	+		GFF1824	0.27	-0.7
1,844,987	+		GFF1824	0.27	+0.6
1,844,987	+		GFF1824	0.27	-2.1
1,844,987	+		GFF1824	0.27	-0.4
1,844,987	+		GFF1824	0.27	-1.7
1,844,987	+		GFF1824	0.27	+1.0
1,844,987	+		GFF1824	0.27	-0.8
1,844,995	-		GFF1824	0.28	+1.7
1,844,995	-		GFF1824	0.28	-0.8
1,844,995	-		GFF1824	0.28	+0.8
1,844,995	-		GFF1824	0.28	-1.3
1,844,998	+		GFF1824	0.29	+1.5
1,845,018	+		GFF1824	0.32	-1.4
1,845,029	-		GFF1824	0.34	+0.6
1,845,045	+		GFF1824	0.37	-0.8
1,845,051	+		GFF1824	0.38	-0.9
1,845,055	+		GFF1824	0.38	-0.1
1,845,116	-		GFF1824	0.49	+0.2
1,845,173	+		GFF1824	0.58	-1.3
1,845,188	-		GFF1824	0.61	+0.7
1,845,199	+		GFF1824	0.63	+0.1
1,845,207	-		GFF1824	0.64	+0.6
1,845,207	-		GFF1824	0.64	-0.8
1,845,264	+		GFF1824	0.74	-2.2
1,845,304	+		GFF1824	0.80	+0.0
1,845,310	+		GFF1824	0.81	+0.7
1,845,324	+		GFF1824	0.84	+1.2
1,845,333	+		GFF1824	0.85	+0.1
1,845,338	+		GFF1824	0.86	-0.2
1,845,338	+		GFF1824	0.86	-0.0
1,845,338	+		GFF1824	0.86	-1.3
1,845,341	-		GFF1824	0.87	-0.8
1,845,341	-		GFF1824	0.87	+0.8
1,845,346	+		GFF1824	0.87	+1.4
1,845,346	-		GFF1824	0.87	+0.5
1,845,347	-		GFF1824	0.88	-0.1
1,845,354	-		GFF1824	0.89	-0.1
1,845,354	-		GFF1824	0.89	-0.5
1,845,356	+		GFF1824	0.89	-0.3
1,845,362	-				-0.2
1,845,364	-				+0.6
1,845,377	+				-1.3
1,845,437	+				+0.1
1,845,437	+				-0.3
1,845,445	-				+0.5
1,845,447	-				+0.0
1,845,455	-				-0.4
1,845,458	-				-0.1
1,845,460	+				-1.1
1,845,468	-				+0.6
1,845,470	+				-3.2
1,845,470	+				+0.6
1,845,470	+				-0.8
1,845,478	-				+0.8
1,845,479	+				+0.7
1,845,480	+				-0.9
1,845,485	+				+0.8
1,845,488	-		GFF1825	0.10	-1.1
1,845,488	-		GFF1825	0.10	-0.6
1,845,513	-		GFF1825	0.14	-0.2
1,845,513	-		GFF1825	0.14	-0.5
1,845,524	-		GFF1825	0.15	-0.4
1,845,524	-		GFF1825	0.15	+0.7
1,845,543	+		GFF1825	0.18	+0.9
1,845,543	+		GFF1825	0.18	-1.8
1,845,543	+		GFF1825	0.18	-0.8
1,845,551	-		GFF1825	0.19	+1.3
1,845,551	-		GFF1825	0.19	-0.2
1,845,551	-		GFF1825	0.19	-0.1
1,845,556	+		GFF1825	0.20	+1.4
1,845,556	+		GFF1825	0.20	-0.1
1,845,556	+		GFF1825	0.20	-0.2
1,845,556	+		GFF1825	0.20	+0.4
1,845,556	+		GFF1825	0.20	-1.7
1,845,556	+		GFF1825	0.20	-0.1
1,845,556	+		GFF1825	0.20	-1.5
1,845,556	+		GFF1825	0.20	+0.5
1,845,559	-		GFF1825	0.20	+0.6
1,845,564	-		GFF1825	0.21	-0.1
1,845,564	-		GFF1825	0.21	+0.7
1,845,564	-		GFF1825	0.21	+1.5
1,845,564	-		GFF1825	0.21	-0.1
1,845,564	-		GFF1825	0.21	-0.8
1,845,635	+		GFF1825	0.31	-1.9
1,845,643	-		GFF1825	0.32	-2.7
1,845,658	-		GFF1825	0.34	-1.3
1,845,668	+		GFF1825	0.35	+0.2
1,845,677	+		GFF1825	0.36	+0.1
1,845,677	+		GFF1825	0.36	+0.4
1,845,679	+		GFF1825	0.37	+1.7
1,845,743	+		GFF1825	0.46	+0.4
1,845,773	+		GFF1825	0.50	-0.6
1,845,781	-		GFF1825	0.51	+0.9
1,845,781	-		GFF1825	0.51	-1.8
1,845,794	+		GFF1825	0.53	-1.1
1,845,823	+		GFF1825	0.57	-0.2
1,845,823	+		GFF1825	0.57	-0.3
1,845,828	+		GFF1825	0.57	-0.3
1,845,828	+		GFF1825	0.57	-0.5
1,845,828	+		GFF1825	0.57	-0.8
1,845,828	+		GFF1825	0.57	-0.7
1,845,831	-		GFF1825	0.58	+0.4
1,845,831	-		GFF1825	0.58	-1.1
1,845,836	-		GFF1825	0.59	+0.1
1,845,867	-		GFF1825	0.63	-0.4
1,845,877	+		GFF1825	0.64	-0.8
1,845,926	-		GFF1825	0.71	+0.3
1,845,930	-		GFF1825	0.72	+0.7
1,845,934	-		GFF1825	0.72	+0.1
1,845,972	-		GFF1825	0.78	-0.5
1,845,972	-		GFF1825	0.78	+0.2
1,845,998	-		GFF1825	0.81	+0.3
1,846,030	-		GFF1825	0.86	-0.4
1,846,034	+		GFF1825	0.86	+0.1
1,846,034	+		GFF1825	0.86	-1.8
1,846,042	-		GFF1825	0.87	-0.1
1,846,042	-		GFF1825	0.87	-0.4
1,846,047	-		GFF1825	0.88	-0.6
1,846,048	-		GFF1825	0.88	+0.7
1,846,067	-				-1.9
1,846,087	-				-1.3
1,846,087	-				+0.9
1,846,087	-				-1.3
1,846,106	-				-0.1
1,846,126	+				-0.6
1,846,129	-				-0.2
1,846,147	+				+1.3
1,846,161	-				-0.3
1,846,187	-				-2.1
1,846,193	-				-1.0
1,846,197	-				-0.1
1,846,222	-				-1.7
1,846,229	+				-0.8
1,846,229	+				-1.0
1,846,229	+				-0.9
1,846,229	+				+0.7
1,846,229	+				-0.1
1,846,237	-				-0.0
1,846,237	-				-1.0
1,846,237	-				-1.9
1,846,237	-				+0.2
1,846,309	+				+0.1
1,846,309	+				+0.4
1,846,309	+				+0.5
1,846,309	+				-1.5
1,846,309	+				-0.1
1,846,309	+				+0.2
1,846,309	+				+0.2
1,846,309	+				+0.2
1,846,309	+				-0.1
1,846,309	+				+1.4
1,846,309	+				+0.4
1,846,309	+				+0.1
1,846,309	+				-0.9
1,846,309	+				+1.1
1,846,309	+				-0.1
1,846,309	+				-0.6
1,846,309	+				-1.2
1,846,309	+				-0.5
1,846,309	+				-0.6
1,846,309	+				-1.0
1,846,317	-				+0.4
1,846,317	-				+0.4
1,846,317	-				-0.7
1,846,317	-				-1.2
1,846,317	-				+0.1
1,846,317	-				+0.3
1,846,317	-				+2.2
1,846,317	-				-1.0
1,846,317	-				-0.0
1,846,317	-				-0.9
1,846,317	-				-0.7
1,846,319	+				-2.1
1,846,319	+				+0.4
1,846,327	-				-1.6
1,846,329	-				-1.2
1,846,329	-				-0.4
1,846,329	-				-1.6
1,846,329	-				+0.4
1,846,329	-				+0.5
1,846,329	-				+1.7
1,846,330	+				-0.6
1,846,330	+				-0.6
1,846,338	+				+0.1
1,846,338	-				-0.5
1,846,338	-				+1.0
1,846,340	+				+0.6
1,846,345	+				-0.8
1,846,345	+				-2.3
1,846,346	-				+0.5
1,846,353	-				-1.0
1,846,353	-				+0.4
1,846,373	+				-0.1
1,846,373	+				-0.4
1,846,381	-				+1.6