Strain Fitness in Sphingobium sp. HT1-2 around GFF1810

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,831,225	-		GFF1809	0.22	-2.0
1,831,251	+		GFF1809	0.24	-0.1
1,831,277	+		GFF1809	0.26	+0.8
1,831,277	+		GFF1809	0.26	-0.3
1,831,277	+		GFF1809	0.26	-1.2
1,831,285	-		GFF1809	0.27	+0.5
1,831,298	+		GFF1809	0.28	+0.9
1,831,308	+		GFF1809	0.29	-0.3
1,831,316	-		GFF1809	0.30	+0.2
1,831,316	-		GFF1809	0.30	-0.3
1,831,340	-		GFF1809	0.31	-2.1
1,831,348	-		GFF1809	0.32	+0.3
1,831,373	+		GFF1809	0.34	+0.7
1,831,374	+		GFF1809	0.34	-0.7
1,831,378	+		GFF1809	0.34	-0.1
1,831,391	+		GFF1809	0.35	-0.8
1,831,392	-		GFF1809	0.36	-1.8
1,831,409	-		GFF1809	0.37	-0.6
1,831,409	-		GFF1809	0.37	+0.9
1,831,409	-		GFF1809	0.37	-1.5
1,831,411	+		GFF1809	0.37	-1.3
1,831,411	+		GFF1809	0.37	-0.2
1,831,414	-		GFF1809	0.37	-0.6
1,831,416	+		GFF1809	0.37	-2.3
1,831,457	+		GFF1809	0.41	-0.2
1,831,465	-		GFF1809	0.41	-0.9
1,831,465	-		GFF1809	0.41	-0.9
1,831,465	-		GFF1809	0.41	+1.3
1,831,480	-		GFF1809	0.42	-2.3
1,831,502	+		GFF1809	0.44	-1.9
1,831,502	+		GFF1809	0.44	-0.4
1,831,503	-		GFF1809	0.44	+0.8
1,831,510	-		GFF1809	0.45	-1.1
1,831,510	-		GFF1809	0.45	+0.4
1,831,510	-		GFF1809	0.45	+0.0
1,831,515	-		GFF1809	0.45	+0.7
1,831,525	+		GFF1809	0.46	-1.6
1,831,531	+		GFF1809	0.46	+0.5
1,831,534	-		GFF1809	0.47	-1.4
1,831,539	-		GFF1809	0.47	+1.4
1,831,562	-		GFF1809	0.49	+0.1
1,831,562	-		GFF1809	0.49	-0.7
1,831,569	+		GFF1809	0.49	-0.1
1,831,572	-		GFF1809	0.50	-0.0
1,831,572	-		GFF1809	0.50	-0.5
1,831,577	-		GFF1809	0.50	-0.9
1,831,577	-		GFF1809	0.50	-0.8
1,831,577	-		GFF1809	0.50	-2.0
1,831,578	-		GFF1809	0.50	-0.7
1,831,582	+		GFF1809	0.50	+0.1
1,831,590	-		GFF1809	0.51	+0.1
1,831,590	-		GFF1809	0.51	-0.7
1,831,591	-		GFF1809	0.51	-1.1
1,831,591	-		GFF1809	0.51	+0.6
1,831,607	-		GFF1809	0.52	-0.1
1,831,614	+		GFF1809	0.53	-1.2
1,831,614	+		GFF1809	0.53	-0.9
1,831,614	+		GFF1809	0.53	+0.2
1,831,614	+		GFF1809	0.53	+0.2
1,831,614	+		GFF1809	0.53	-1.2
1,831,614	+		GFF1809	0.53	-1.4
1,831,614	+		GFF1809	0.53	-0.2
1,831,614	+		GFF1809	0.53	-0.2
1,831,614	+		GFF1809	0.53	+1.0
1,831,617	-		GFF1809	0.53	+0.5
1,831,622	-		GFF1809	0.54	-0.2
1,831,622	-		GFF1809	0.54	-0.9
1,831,622	-		GFF1809	0.54	-1.1
1,831,622	-		GFF1809	0.54	-1.5
1,831,622	-		GFF1809	0.54	-1.1
1,831,622	-		GFF1809	0.54	+0.6
1,831,622	-		GFF1809	0.54	+0.3
1,831,622	-		GFF1809	0.54	+0.4
1,831,622	-		GFF1809	0.54	-0.5
1,831,622	-		GFF1809	0.54	-2.5
1,831,636	-		GFF1809	0.55	-1.4
1,831,647	-		GFF1809	0.56	-1.4
1,831,647	-		GFF1809	0.56	+0.2
1,831,659	-		GFF1809	0.57	-0.8
1,831,686	+		GFF1809	0.59	-1.4
1,831,694	-		GFF1809	0.59	+0.1
1,831,695	+		GFF1809	0.59	-1.5
1,831,725	-		GFF1809	0.62	+1.6
1,831,732	-		GFF1809	0.62	-0.3
1,831,734	+		GFF1809	0.62	+1.2
1,831,734	+		GFF1809	0.62	+1.0
1,831,746	+		GFF1809	0.63	-1.2
1,831,746	+		GFF1809	0.63	-1.0
1,831,754	-		GFF1809	0.64	+0.9
1,831,754	-		GFF1809	0.64	+0.0
1,831,766	+		GFF1809	0.65	+1.1
1,831,779	+		GFF1809	0.66	+0.2
1,831,779	+		GFF1809	0.66	-0.9
1,831,779	-		GFF1809	0.66	-2.1
1,831,787	-		GFF1809	0.67	-1.3
1,831,827	+		GFF1809	0.70	-1.0
1,831,827	+		GFF1809	0.70	-0.9
1,831,827	+		GFF1809	0.70	-0.5
1,831,835	-		GFF1809	0.70	-1.6
1,831,835	-		GFF1809	0.70	-1.4
1,831,885	+		GFF1809	0.74	+0.2
1,831,902	+		GFF1809	0.76	-1.5
1,831,911	-		GFF1809	0.76	+0.4
1,831,921	+		GFF1809	0.77	-2.2
1,831,934	-		GFF1809	0.78	+0.9
1,831,937	+		GFF1809	0.78	+1.4
1,831,942	+		GFF1809	0.79	+0.0
1,831,942	+		GFF1809	0.79	-0.5
1,831,942	+		GFF1809	0.79	+1.2
1,831,945	-		GFF1809	0.79	+0.3
1,831,945	-		GFF1809	0.79	-0.3
1,831,950	-		GFF1809	0.79	-1.2
1,831,963	-		GFF1809	0.80	-0.2
1,831,974	+		GFF1809	0.81	-0.3
1,831,974	+		GFF1809	0.81	+0.4
1,831,982	-		GFF1809	0.82	-1.0
1,831,982	-		GFF1809	0.82	+1.4
1,831,995	+		GFF1809	0.83	-0.4
1,832,005	+		GFF1809	0.84	-1.3
1,832,012	-		GFF1809	0.84	-1.0
1,832,013	-		GFF1809	0.84	-2.1
1,832,016	-		GFF1809	0.85	+0.4
1,832,033	+		GFF1809	0.86	-1.5
1,832,041	-		GFF1809	0.87	-0.6
1,832,041	-		GFF1809	0.87	-0.5
1,832,072	-		GFF1809	0.89	+0.2
1,832,076	+		GFF1809	0.89	+0.2
1,832,077	-		GFF1809	0.89	+0.4
1,832,088	+				-1.8
1,832,096	-				+0.6
1,832,096	-				+0.9
1,832,115	-				+0.2
1,832,120	-				+0.2
1,832,145	+				+0.5
1,832,146	+				-0.6
1,832,151	+				-1.2
1,832,159	-				+0.8
1,832,165	+				+0.7
1,832,183	-				+1.0
1,832,193	+				-1.9
1,832,193	+				+0.5
1,832,193	+				+0.8
1,832,196	-				+1.0
1,832,201	-				-0.1
1,832,202	-				+0.4
1,832,202	-				+0.8
1,832,210	+				+0.2
1,832,210	+				+0.2
1,832,218	-				-1.3
1,832,258	-				-0.6
1,832,282	-				-0.6
1,832,303	+				+0.9
1,832,306	-		GFF1810	0.10	-2.5
1,832,318	+		GFF1810	0.11	-0.5
1,832,319	-		GFF1810	0.12	-0.3
1,832,323	+		GFF1810	0.12	+0.4
1,832,331	-		GFF1810	0.13	+0.4
1,832,331	-		GFF1810	0.13	+0.3
1,832,331	-		GFF1810	0.13	-0.1
1,832,331	-		GFF1810	0.13	-0.0
1,832,334	+		GFF1810	0.13	+1.3
1,832,334	+		GFF1810	0.13	-0.6
1,832,334	+		GFF1810	0.13	-1.6
1,832,337	-		GFF1810	0.14	-1.6
1,832,339	-		GFF1810	0.14	-0.5
1,832,339	-		GFF1810	0.14	-1.9
1,832,342	-		GFF1810	0.14	+0.8
1,832,342	-		GFF1810	0.14	-0.8
1,832,346	-		GFF1810	0.15	-1.3
1,832,375	+		GFF1810	0.18	-0.4
1,832,419	+		GFF1810	0.23	+0.9
1,832,427	+		GFF1810	0.24	+1.3
1,832,427	+		GFF1810	0.24	-1.0
1,832,427	+		GFF1810	0.24	+0.2
1,832,435	-		GFF1810	0.25	+0.2
1,832,435	-		GFF1810	0.25	+0.4
1,832,435	-		GFF1810	0.25	+0.3
1,832,435	-		GFF1810	0.25	-1.3
1,832,450	-		GFF1810	0.27	+0.4
1,832,455	-		GFF1810	0.27	+0.1
1,832,455	-		GFF1810	0.27	-0.1
1,832,460	+		GFF1810	0.28	+0.6
1,832,479	-		GFF1810	0.30	-1.0
1,832,490	+		GFF1810	0.31	-0.6
1,832,495	+		GFF1810	0.32	-0.7
1,832,537	-		GFF1810	0.37	-0.0
1,832,537	-		GFF1810	0.37	-0.6
1,832,549	+		GFF1810	0.38	-1.2
1,832,554	+		GFF1810	0.39	-0.1
1,832,554	+		GFF1810	0.39	+0.1
1,832,554	+		GFF1810	0.39	+0.9
1,832,554	+		GFF1810	0.39	-0.3
1,832,562	-		GFF1810	0.40	-0.1
1,832,594	+		GFF1810	0.43	+0.8
1,832,601	+		GFF1810	0.44	+1.3
1,832,602	-		GFF1810	0.44	-1.7
1,832,626	+		GFF1810	0.47	+0.4
1,832,645	+		GFF1810	0.49	+0.3
1,832,645	+		GFF1810	0.49	-1.2
1,832,645	+		GFF1810	0.49	+0.6
1,832,653	-		GFF1810	0.50	-0.9
1,832,653	-		GFF1810	0.50	+0.9
1,832,654	-		GFF1810	0.50	+0.6
1,832,690	+		GFF1810	0.55	+0.3
1,832,691	+		GFF1810	0.55	+0.6
1,832,691	+		GFF1810	0.55	+0.9
1,832,691	+		GFF1810	0.55	-1.0
1,832,695	+		GFF1810	0.55	-0.2
1,832,699	-		GFF1810	0.56	-1.4
1,832,789	+		GFF1810	0.66	-1.1
1,832,789	+		GFF1810	0.66	-1.1
1,832,797	-		GFF1810	0.67	-0.4
1,832,797	-		GFF1810	0.67	+0.7
1,832,810	+		GFF1810	0.68	-0.4
1,832,818	-		GFF1810	0.69	-0.7
1,832,818	-		GFF1810	0.69	-0.8
1,832,818	-		GFF1810	0.69	-0.4
1,832,818	-		GFF1810	0.69	-0.2
1,832,818	-		GFF1810	0.69	-1.1
1,832,832	+		GFF1810	0.71	-0.6
1,832,856	-		GFF1810	0.74	-0.2
1,832,856	-		GFF1810	0.74	-2.1
1,832,897	+		GFF1810	0.78	+1.4
1,832,902	-		GFF1810	0.79	-0.9
1,832,903	-		GFF1810	0.79	+1.1
1,832,910	-		GFF1810	0.80	-0.9
1,832,932	+		GFF1810	0.83	-0.2
1,832,962	+		GFF1810	0.86	-0.9
1,832,962	+		GFF1810	0.86	-1.6
1,832,962	+		GFF1810	0.86	-0.9
1,832,962	+		GFF1810	0.86	-1.2
1,832,962	+		GFF1810	0.86	-1.5
1,832,968	+		GFF1810	0.87	-1.2
1,832,970	-		GFF1810	0.87	+0.8
1,832,970	-		GFF1810	0.87	+0.5
1,832,970	-		GFF1810	0.87	-0.1
1,832,975	-		GFF1810	0.88	-0.2
1,832,976	-		GFF1810	0.88	-1.0
1,832,976	-		GFF1810	0.88	+1.5
1,832,976	-		GFF1810	0.88	-2.2
1,833,003	+				+0.3
1,833,011	-				+0.7
1,833,035	+				-0.9
1,833,043	-				-1.2
1,833,054	-				-1.3
1,833,076	+				+0.4
1,833,084	+				-0.8
1,833,129	+				+0.9
1,833,130	+				+0.8
1,833,137	-				-0.6
1,833,171	-				-1.4
1,833,184	-				-0.7
1,833,188	-				+0.5
1,833,190	-				-0.5
1,833,201	-				-1.7
1,833,201	-				-0.5
1,833,231	-				-0.5
1,833,232	-				+1.1
1,833,241	-				-0.1
1,833,246	-				+0.3
1,833,271	+		GFF1811	0.10	+0.4
1,833,280	+		GFF1811	0.11	+0.1
1,833,285	+		GFF1811	0.11	+0.2
1,833,285	+		GFF1811	0.11	+0.6
1,833,285	+		GFF1811	0.11	+0.9
1,833,288	-		GFF1811	0.12	+1.5
1,833,290	+		GFF1811	0.12	+0.1
1,833,298	-		GFF1811	0.12	+0.1
1,833,310	-		GFF1811	0.13	-0.8
1,833,312	+		GFF1811	0.14	+1.3
1,833,312	+		GFF1811	0.14	-0.3
1,833,320	-		GFF1811	0.14	-0.7
1,833,347	-		GFF1811	0.16	-0.5
1,833,352	+		GFF1811	0.17	-0.5
1,833,352	+		GFF1811	0.17	-0.8
1,833,390	+		GFF1811	0.19	-0.4
1,833,390	+		GFF1811	0.19	+0.2
1,833,396	-		GFF1811	0.20	+1.4
1,833,409	+		GFF1811	0.21	-0.4
1,833,417	-		GFF1811	0.21	+0.5
1,833,417	-		GFF1811	0.21	+0.4
1,833,427	+		GFF1811	0.22	+1.4
1,833,427	+		GFF1811	0.22	-0.3
1,833,468	+		GFF1811	0.25	-0.6
1,833,468	+		GFF1811	0.25	-0.7
1,833,468	+		GFF1811	0.25	+0.4
1,833,468	+		GFF1811	0.25	-1.4
1,833,468	+		GFF1811	0.25	-0.2
1,833,468	+		GFF1811	0.25	-1.5
1,833,468	+		GFF1811	0.25	+0.4
1,833,468	+		GFF1811	0.25	+1.0
1,833,468	+		GFF1811	0.25	+0.0
1,833,468	+		GFF1811	0.25	+0.5
1,833,468	+		GFF1811	0.25	+0.4
1,833,468	+		GFF1811	0.25	-0.4
1,833,468	+		GFF1811	0.25	+0.9
1,833,468	+		GFF1811	0.25	-2.6
1,833,468	+		GFF1811	0.25	-0.0
1,833,468	+		GFF1811	0.25	-0.2
1,833,468	+		GFF1811	0.25	+0.3
1,833,468	+		GFF1811	0.25	-1.2
1,833,468	+		GFF1811	0.25	+0.7
1,833,468	+		GFF1811	0.25	-0.0
1,833,468	+		GFF1811	0.25	-0.8
1,833,473	+		GFF1811	0.26	-1.5
1,833,473	+		GFF1811	0.26	-1.5
1,833,476	-		GFF1811	0.26	-2.3
1,833,476	-		GFF1811	0.26	-0.9
1,833,476	-		GFF1811	0.26	-1.3
1,833,476	-		GFF1811	0.26	+0.2
1,833,483	+		GFF1811	0.26	-0.8
1,833,483	+		GFF1811	0.26	+1.4
1,833,483	+		GFF1811	0.26	+1.0
1,833,483	+		GFF1811	0.26	-0.2
1,833,491	-		GFF1811	0.27	+0.3
1,833,491	-		GFF1811	0.27	-1.0
1,833,491	-		GFF1811	0.27	-1.4
1,833,543	-		GFF1811	0.31	-0.3
1,833,601	-		GFF1811	0.35	-0.5
1,833,606	+		GFF1811	0.36	+0.1
1,833,606	-		GFF1811	0.36	-2.0
1,833,608	+		GFF1811	0.36	-0.0
1,833,608	+		GFF1811	0.36	+0.7
1,833,608	+		GFF1811	0.36	-1.3
1,833,608	+		GFF1811	0.36	-2.0
1,833,608	+		GFF1811	0.36	+0.8
1,833,609	-		GFF1811	0.36	-0.7
1,833,611	+		GFF1811	0.36	-2.5
1,833,611	-		GFF1811	0.36	+0.4
1,833,614	-		GFF1811	0.36	-0.5
1,833,616	-		GFF1811	0.36	-0.2
1,833,616	-		GFF1811	0.36	+0.8
1,833,619	-		GFF1811	0.37	-0.6
1,833,626	-		GFF1811	0.37	+0.8
1,833,631	+		GFF1811	0.37	-1.7
1,833,632	+		GFF1811	0.38	-0.8
1,833,640	+		GFF1811	0.38	-1.9
1,833,640	+		GFF1811	0.38	-0.2
1,833,640	+		GFF1811	0.38	-1.4
1,833,640	+		GFF1811	0.38	+0.4
1,833,640	+		GFF1811	0.38	-1.2
1,833,642	+		GFF1811	0.38	-1.8
1,833,648	-		GFF1811	0.39	+1.6
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